RLG00000014570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016253
Physical Location & Seq
Reverse (-)
54865004 .. 54866011
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014570

Sequence Viewer

Length: 1008 bp
ATGGAAATCCCAGATGATCACTTTCCCTATGTTAATATTAGTGCACCCACCAGTCCTGGTATATGCAGCCCTCACAATAACCTCTACTTCTACAGTGTTCCGAGTAGTCCTACCAGAGAAACCTCAACTGGTACTAGTCCATTTGGTTACCAAACTGATCTAAATGAGTGCCCTACACCAATGTCATACCACGACGCCAATGCCTATCTCGATGACTTTGAGTTTGAAACCGGTGTAAGTTTTAGTCTTGATGTTGGTGATCAAAGTCTGGTCCAATCGAGCCCGTTTGGTCATGATAGAAAGCCAAGGCAGCGCGGGGATTCACTTCCGACCAGCATGGCATTTGCGGATGAGCTTTTCTGTGATGGGAAAGTCATGCCGCTTGCCCCTCCACTCAAGCTTCCACCGCGGCTTCAGAGGAACAGAAATGAGAGGCTGGCAAGCCAAGCAGAAACTGGTGCGTCTGTGCCGGGGTCTCCGAGTAATTTCGTGCTTAAATTGCCATTTGGATATAAGAGGTTGTGGAATGATGATTTTGATCCATTCATGGCGGCATTGAAAAATGTCAAGGAGGAAAAGAAGGAGAAAGCTTCAGCTGCTTCGCCCTCATATGCTACAAACAATCAGACTACGGATGAGCCTGGGGACGAAGACGCAACAACTTCTGCGCCTGAACCGATATCGAGAGAAATCGGTGGACAAATTGTTCCAAAGAGGCAGCTGACGCAGCCGAAAGGAGTCGAGTTTGCAAGGCAAGTCAGACTTATTCAAATGGGCCAGATGAGTAAGTTGGACAAGTTAGGGAAGCAAAGTGAAAGAGATGAGAAAGCAGAATCAATGAGGAAGAAGCCAACATTTCTAAGGAGACTAAGCTTTAAGTCTGGCAGAGCAGCTCATTGTGAGGAGAAAAGGGTATCTCATTCTCGTCCTCATTCTCAACTAAGCAAGATGGCATTGATGAACTACAAGCCCAGAGGGTTACTTTGCTTGGGTTATAAGACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

336

Amino Acids

37.34

Weight (kDa)

8.46

Isoelectric Point (pI)

58.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06740
malus_domestica MD00G1045800.v1.1 MD03G1164300.v1.1
prunus_persica Prupe.4G260600_v2.0.a1
pyrus_communis pycom12561g00260
rosa_chinensis RchiOBHm_Chr6g0258931
rosa_laevigata RLG00000014570
rosa_multiflora Rmu_sc0004347.1_g000009
rosa_roxburghii Rroxscaffold_7G00206180
rosa_rugosa Rorug05G0584500
rosa_samantha Rh6AG100900 Rh6BG092800 Rh6CG090100 Rh6DG084300
rosa_wichuraiana Rw6G008760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
AccII CGCG 2 cut(s) 315, 409
AciI CCGC 6 cut(s) 315, 347, 380, 407, 409, 551
AclWI GGATC 1 cut(s) 533
AcuI CTGAAG 2 cut(s) 398, 576
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 133
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 3 cut(s) 227, 559, 770
AhlI ACTAGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 55, 640
AloI GAACNNNNNNTCC 2 cut(s) 690, 722
AluBI AGCT 8 cut(s) 355, 400, 590, 596, 721, 873, 893, 1005
AluI AGCT 8 cut(s) 355, 400, 590, 596, 721, 873, 893, 1005
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 480, 859
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 533
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 1 cut(s) 775
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 6 cut(s) 66, 310, 596, 718, 727, 890
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AsiGI ACCGGT 1 cut(s) 230
AspLEI GCGC 2 cut(s) 315, 670
AspS9I GGNCC 2 cut(s) 271, 775
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 2 cut(s) 46, 173
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 6 cut(s) 78, 322, 583, 730, 739, 902
BccI CCATC 2 cut(s) 359, 943
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 2 cut(s) 57, 642
BclI TGATCA 2 cut(s) 16, 259
BcnI CCSGG 1 cut(s) 471
BcoDI GTCTC 2 cut(s) 480, 859
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 2 cut(s) 135, 1006
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 9 cut(s) 67, 311, 380, 410, 552, 597, 719, 728, 891
BlsI GCNGC 9 cut(s) 68, 312, 381, 411, 553, 598, 720, 729, 892
Bme1390I CCNGG 3 cut(s) 57, 471, 642
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 271, 775
BmrFI CCNGG 3 cut(s) 57, 471, 642
BpiI GAAGAC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 471
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 480
BsaJI CCNNGG 4 cut(s) 305, 407, 470, 641
BsaWI WCCGGW 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 3 cut(s) 51, 133, 460
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 2 cut(s) 57, 642
BseDI CCNNGG 4 cut(s) 305, 407, 470, 641
BseGI GGATG 2 cut(s) 355, 640
BseJI GATNNNNATC 1 cut(s) 537
BseNI ACTGG 3 cut(s) 51, 133, 460
BseRI GAGGAG 1 cut(s) 917
BseSI GKGCMC 2 cut(s) 46, 173
BseXI GCAGC 6 cut(s) 78, 322, 583, 730, 739, 902
Bsh1236I CGCG 2 cut(s) 315, 409
BshFI GGCC 1 cut(s) 777
BshTI ACCGGT 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 231, 470
BslFI GGGAC 1 cut(s) 659
BsmAI GTCTC 2 cut(s) 480, 859
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 1 cut(s) 777
Bso31I GGTCTC 1 cut(s) 480
Bsp1286I GDGCHC 3 cut(s) 46, 173, 284
Bsp143I GATC 4 cut(s) 16, 157, 259, 538
BspACI CCGC 6 cut(s) 315, 347, 380, 407, 409, 551
BspANI GGCC 1 cut(s) 777
BspFNI CGCG 2 cut(s) 315, 409
BspHI TCATGA 1 cut(s) 292
BspPI GGATC 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 3 cut(s) 51, 133, 460
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 305, 407, 470, 641
BssMI GATC 4 cut(s) 16, 157, 259, 538
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 57, 642
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 384, 438, 442
BstDEI CTNAG 3 cut(s) 860, 869, 941
BstDSI CCRYGG 1 cut(s) 407
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 2 cut(s) 355, 640
BstFNI CGCG 2 cut(s) 315, 409
BstHHI GCGC 2 cut(s) 315, 670
BstKTI GATC 4 cut(s) 19, 160, 262, 541
BstMAI GTCTC 2 cut(s) 480, 859
BstMBI GATC 4 cut(s) 16, 157, 259, 538
BstMWI GCNNNNNNNGC 7 cut(s) 310, 406, 446, 499, 596, 724, 727
BstNI CCWGG 2 cut(s) 57, 642
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 3 cut(s) 55, 469, 640
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 2 cut(s) 46, 173
BstUI CGCG 2 cut(s) 315, 409
BstV1I GCAGC 6 cut(s) 78, 322, 583, 730, 739, 902
BstV2I GAAGAC 1 cut(s) 657
BsuRI GGCC 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 2 cut(s) 355, 640
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 3 cut(s) 384, 438, 442
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 292
CfoI GCGC 2 cut(s) 315, 670
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 271, 775
Cfr42I CCGCGG 1 cut(s) 410
CseI GACGC 4 cut(s) 203, 450, 662, 733
Csp6I GTAC 1 cut(s) 132
CspAI ACCGGT 1 cut(s) 230
CviAII CATG 4 cut(s) 293, 337, 376, 547
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 3 cut(s) 860, 869, 941
DpnI GATC 4 cut(s) 18, 159, 261, 540
DpnII GATC 4 cut(s) 16, 157, 259, 538
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 480
Eco32I GATATC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 398, 576
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 55, 640
EcoRV GATATC 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 4 cut(s) 296, 340, 379, 550
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FaqI GGGAC 1 cut(s) 659
FatI CATG 4 cut(s) 292, 336, 375, 546
FauI CCCGC 1 cut(s) 308
FauNDI CATATG 1 cut(s) 610
FbaI TGATCA 2 cut(s) 16, 259
Fnu4HI GCNGC 9 cut(s) 67, 311, 380, 410, 552, 597, 719, 728, 891
FokI GGATG 2 cut(s) 362, 647
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 9 cut(s) 67, 311, 380, 410, 552, 597, 719, 728, 891
FspBI CTAG 2 cut(s) 135, 1006
GlaI GCGC 2 cut(s) 314, 669
GluI GCNGC 9 cut(s) 67, 311, 380, 410, 552, 597, 719, 728, 891
HaeIII GGCC 1 cut(s) 777
HapII CCGG 2 cut(s) 231, 470
HgaI GACGC 4 cut(s) 203, 450, 662, 733
HhaI GCGC 2 cut(s) 315, 670
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 4 cut(s) 296, 340, 379, 550
Hin6I GCGC 2 cut(s) 313, 668
HinP1I GCGC 2 cut(s) 313, 668
HindIII AAGCTT 3 cut(s) 398, 588, 871
HinfI GANTC 3 cut(s) 320, 738, 833
HpaII CCGG 2 cut(s) 231, 470
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 2 cut(s) 44, 698
Hpy188I TCNGA 6 cut(s) 102, 330, 417, 480, 627, 761
Hpy188III TCNNGA 4 cut(s) 209, 248, 293, 684
Hpy8I GTNNAC 2 cut(s) 44, 698
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 44, 66, 749
HpyF10VI GCNNNNNNNGC 7 cut(s) 310, 406, 446, 499, 596, 724, 727
HpyF3I CTNAG 3 cut(s) 860, 869, 941
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 4 cut(s) 296, 340, 379, 550
HspAI GCGC 2 cut(s) 313, 668
Ksp22I TGATCA 2 cut(s) 16, 259
KspI CCGCGG 1 cut(s) 410
Kzo9I GATC 4 cut(s) 16, 157, 259, 538
Lsp1109I GCAGC 6 cut(s) 78, 322, 583, 730, 739, 902
MaeI CTAG 2 cut(s) 135, 1006
MaeIII GTNAC 2 cut(s) 146, 978
MalI GATC 4 cut(s) 18, 159, 261, 540
MboI GATC 4 cut(s) 16, 157, 259, 538
MboII GAAGA 2 cut(s) 662, 856
MhlI GDGCHC 3 cut(s) 46, 173, 284
MluCI AATT 3 cut(s) 484, 497, 702
MlyI GAGTC 1 cut(s) 747
MmeI TCCRAC 2 cut(s) 353, 771
MseI TTAA 3 cut(s) 33, 495, 876
MspA1I CMGCKG 3 cut(s) 409, 596, 721
MspI CCGG 2 cut(s) 231, 470
MspR9I CCNGG 3 cut(s) 57, 471, 642
MvaI CCWGG 2 cut(s) 57, 642
MvnI CGCG 2 cut(s) 315, 409
MwoI GCNNNNNNNGC 7 cut(s) 310, 406, 446, 499, 596, 724, 727
NciI CCSGG 1 cut(s) 471
NdeI CATATG 1 cut(s) 610
NdeII GATC 4 cut(s) 16, 157, 259, 538
NlaIII CATG 4 cut(s) 296, 340, 379, 550
PagI TCATGA 1 cut(s) 292
PfeI GAWTC 2 cut(s) 320, 833
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 9 cut(s) 68, 312, 381, 411, 553, 598, 720, 729, 892
PleI GAGTC 1 cut(s) 746
PpsI GAGTC 1 cut(s) 746
PsiI TTATAA 1 cut(s) 996
Psp6I CCWGG 2 cut(s) 55, 640
PspEI GGTNACC 1 cut(s) 146
PspGI CCWGG 2 cut(s) 55, 640
PspPI GGNCC 2 cut(s) 271, 775
PstNI CAGNNNCTG 1 cut(s) 455
PvuII CAGCTG 2 cut(s) 596, 721
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SacII CCGCGG 1 cut(s) 410
SaqAI TTAA 3 cut(s) 33, 495, 876
SatI GCNGC 9 cut(s) 67, 311, 380, 410, 552, 597, 719, 728, 891
Sau3AI GATC 4 cut(s) 16, 157, 259, 538
Sau96I GGNCC 2 cut(s) 271, 775
SchI GAGTC 1 cut(s) 747
ScrFI CCNGG 3 cut(s) 57, 471, 642
SduI GDGCHC 3 cut(s) 46, 173, 284
SfcI CTRYAG 1 cut(s) 91
Sfr303I CCGCGG 1 cut(s) 410
SgrBI CCGCGG 1 cut(s) 410
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 3 cut(s) 484, 497, 702
SsiI CCGC 6 cut(s) 315, 347, 380, 407, 409, 551
SspI AATATT 1 cut(s) 37
SspMI CTAG 2 cut(s) 135, 1006
StyD4I CCNGG 3 cut(s) 55, 469, 640
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 4 cut(s) 210, 278, 683, 741
TasI AATT 3 cut(s) 484, 497, 702
TauI GCSGC 3 cut(s) 382, 412, 554
TfiI GAWTC 2 cut(s) 320, 833
Tru1I TTAA 3 cut(s) 33, 495, 876
Tru9I TTAA 3 cut(s) 33, 495, 876
TscAI CASTG 1 cut(s) 100
TseI GCWGC 6 cut(s) 66, 310, 596, 718, 727, 890
TspDTI ATGAA 2 cut(s) 535, 974
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 1 cut(s) 100
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XspI CTAG 2 cut(s) 135, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.