Prupe.4G260600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016253
Physical Location & Seq
Forward (+)
18801687 .. 18802871
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G260600.1

Sequence Viewer

Length: 1185 bp
ATGGAAAACCCAGATGATTTCTCCTCCTATGTGAGTGCCCCAAATAGCCCTGCTCAATGCAGCCCTGGAAATAATTTGTTCTTCTGTAGTGCCCCGGGCAGTCCTAGGAAAAGAACAATATCAAACACTCCATATGATGCATGTTACAGTGATCATGAGTACATGACACCACCAATGACACCCTATCAAGATGCCAATTCCGATCTCGATGACTTTGAATTCGAAACCAGTCGCAGTTTCAATCTTGATGTGTTTGATAATGTGAAAAGTCAGCAGAAGGCTTCGTTGGACCGGAAACAGCAAGAACAAATTAGGCAACAAAGGCAGTGCAAGGAGTCCCTTCCGATGACCATGTCATTTGCTGATGAGCTTTTCTGTGATGGAAAAGTGATGCCACTTGCACCTCCGGCACTCAAACTTCCACCACGTCTTCATCAGAAAAGGAGTGGCAGCCAGAGCCCCATGCCATCTTCCCCAAGGTCTCCCAGTTTTGTTTCGAATTTGCCATTTTCGTACAGGAGGTTGTGGAATGATGACTTTGATCCATTCATGGTGGCATTGGAGCATGTCAGGGAGGAGAAAAGGAGAGGGAAAGAAAAGACAGACGATCATAACATGGTGGGCTTGAATGACCAACAGAACAAGCAAACTGGCCTGCTAACACCAATTCACTCACCTTCTGCAAACTCTGCAGGTCAGCTGGAACCAAGGAAACAAGTTGGGCAAAGTCAAAAGAGGCTGGCTCTTCCCAAAGGACTAGAATTTGCAAGACAAGTTAGACTTATCCAAAATGGTTATAATGAGAGATTTAGTGAACTCAATATGGCAAGACCTGTCTGCAGAGTAGAAGAGACACCTAAGAATAAGATTTTTCAAGGGAGTGGAGATCAAAGGAACATAAGTGCTCCTTGTACAAAGGAAACCAAGGGGCAGAAAATCAAAGGGCTTTCACTGAGTGCTTCTTTCGGGAAAGTAGATGATGACAAGAAGAAGCAAAGAGATCAAAGTTCAGCAATATTGAGCAGAAAGCCAACATTTCTAAGGAGACTAATCTCTAAGTCTGGGGGATCAGCCCACTGCAGTGGGGAGAAAAGGGTATCTGATCAACTCGCCAAGACGACATTTGTACATTTCAGGCCAAGGCTCTTACTTTGCATGGGTTATAAGGCAAGGTATGCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

395

Amino Acids

44.55

Weight (kDa)

9.47

Isoelectric Point (pI)

62.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06740
malus_domestica MD00G1045800.v1.1 MD03G1164300.v1.1
prunus_persica Prupe.4G260600_v2.0.a1
pyrus_communis pycom12561g00260
rosa_chinensis RchiOBHm_Chr6g0258931
rosa_laevigata RLG00000014570
rosa_multiflora Rmu_sc0004347.1_g000009
rosa_roxburghii Rroxscaffold_7G00206180
rosa_rugosa Rorug05G0584500
rosa_samantha Rh6AG100900 Rh6BG092800 Rh6CG090100 Rh6DG084300
rosa_wichuraiana Rw6G008760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 798, 1164
Acc36I ACCTGC 1 cut(s) 683
AclWI GGATC 2 cut(s) 536, 1075
AcsI RAATTY 3 cut(s) 218, 499, 761
AdeI CACNNNGTG 1 cut(s) 956
AfaI GTAC 4 cut(s) 161, 515, 913, 1128
AgsI TTSAA 4 cut(s) 218, 241, 628, 875
AjiI CACGTC 1 cut(s) 428
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AleI CACNNNNGTG 1 cut(s) 1080
AluBI AGCT 2 cut(s) 370, 700
AluI AGCT 2 cut(s) 370, 700
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 3 cut(s) 486, 845, 1039
AlwI GGATC 2 cut(s) 536, 1075
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 2 cut(s) 652, 1136
ApeKI GCWGC 2 cut(s) 60, 450
ApoI RAATTY 3 cut(s) 218, 499, 761
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspA2I CCTAGG 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 2 cut(s) 95, 96
AsuHPI GGTGA 1 cut(s) 666
AsuII TTCGAA 2 cut(s) 222, 497
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 1 cut(s) 289
AvrII CCTAGG 1 cut(s) 104
BaeGI GKGCMC 2 cut(s) 40, 94
BanII GRGCYC 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 907
BbvI GCAGC 2 cut(s) 72, 462
BccI CCATC 2 cut(s) 374, 475
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 2 cut(s) 151, 1102
BcnI CCSGG 2 cut(s) 95, 96
BcoDI GTCTC 3 cut(s) 486, 845, 1039
BfaI CTAG 2 cut(s) 105, 758
BfmI CTRYAG 4 cut(s) 85, 690, 838, 1078
BfuAI ACCTGC 1 cut(s) 683
BisI GCNGC 2 cut(s) 61, 451
BlnI CCTAGG 1 cut(s) 104
BlsI GCNGC 2 cut(s) 62, 452
Bme1390I CCNGG 3 cut(s) 66, 95, 96
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 705
BmrFI CCNGG 3 cut(s) 66, 95, 96
BmrI ACTGGG 1 cut(s) 480
BmsI GCATC 3 cut(s) 127, 181, 381
BmuI ACTGGG 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 727, 759
Bpu14I TTCGAA 2 cut(s) 222, 497
BpuMI CCSGG 2 cut(s) 95, 96
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 8 cut(s) 64, 93, 94, 104, 476, 707, 924, 1139
BsaWI WCCGGW 1 cut(s) 291
Bse1I ACTGG 3 cut(s) 228, 486, 655
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 8 cut(s) 64, 93, 94, 104, 476, 707, 924, 1139
BseMII CTCAG 1 cut(s) 944
BseNI ACTGG 3 cut(s) 228, 486, 655
BseRI GAGGAG 2 cut(s) 13, 590
BseSI GKGCMC 2 cut(s) 40, 94
BseXI GCAGC 2 cut(s) 72, 462
BshFI GGCC 2 cut(s) 654, 1138
BsiHKAI GWGCWC 1 cut(s) 907
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 3 cut(s) 95, 292, 407
BslFI GGGAC 1 cut(s) 322
BsmAI GTCTC 3 cut(s) 486, 845, 1039
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 2 cut(s) 654, 1138
Bso31I GGTCTC 1 cut(s) 486
BsoBI CYCGRG 1 cut(s) 94
Bsp119I TTCGAA 2 cut(s) 222, 497
Bsp1286I GDGCHC 4 cut(s) 40, 94, 461, 907
Bsp1407I TGTACA 2 cut(s) 911, 1126
Bsp143I GATC 8 cut(s) 151, 202, 541, 607, 886, 1000, 1067, 1102
BspANI GGCC 2 cut(s) 654, 1138
BspCNI CTCAG 1 cut(s) 945
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 705
BspMAI CTGCAG 3 cut(s) 694, 842, 1082
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 2 cut(s) 536, 1075
BspQI GCTCTTC 1 cut(s) 750
BspT104I TTCGAA 2 cut(s) 222, 497
BspTNI GGTCTC 1 cut(s) 486
BsrGI TGTACA 2 cut(s) 911, 1126
BsrI ACTGG 3 cut(s) 228, 486, 655
BssECI CCNNGG 8 cut(s) 64, 93, 94, 104, 476, 707, 924, 1139
BssMI GATC 8 cut(s) 151, 202, 541, 607, 886, 1000, 1067, 1102
BssT1I CCWWGG 5 cut(s) 104, 476, 707, 924, 1139
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 2 cut(s) 750, 843
BstAPI GCANNNNNTGC 2 cut(s) 689, 1175
BstAUI TGTACA 2 cut(s) 911, 1126
BstBI TTCGAA 2 cut(s) 222, 497
BstC8I GCNNGC 2 cut(s) 656, 741
BstDEI CTNAG 5 cut(s) 858, 953, 1040, 1056, 1179
BstKTI GATC 8 cut(s) 154, 205, 544, 610, 889, 1003, 1070, 1105
BstMAI GTCTC 3 cut(s) 486, 845, 1039
BstMBI GATC 8 cut(s) 151, 202, 541, 607, 886, 1000, 1067, 1102
BstMWI GCNNNNNNNGC 5 cut(s) 322, 407, 456, 689, 1175
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 2 cut(s) 144, 569
BstSCI CCNGG 3 cut(s) 64, 93, 94
BstSFI CTRYAG 4 cut(s) 85, 690, 838, 1078
BstSLI GKGCMC 2 cut(s) 40, 94
BstV1I GCAGC 2 cut(s) 72, 462
BstV2I GAAGAC 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 1082
BsuRI GGCC 2 cut(s) 654, 1138
BtrI CACGTC 1 cut(s) 428
BtsI GCAGTG 3 cut(s) 332, 1075, 1087
BtsIMutI CAGTG 5 cut(s) 154, 332, 950, 1075, 1087
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 2 cut(s) 656, 741
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 289
Cfr9I CCCGGG 1 cut(s) 94
Csp6I GTAC 4 cut(s) 160, 514, 912, 1127
CviAII CATG 9 cut(s) 141, 155, 163, 352, 463, 550, 566, 616, 1156
CviQI GTAC 4 cut(s) 160, 514, 912, 1127
DdeI CTNAG 5 cut(s) 858, 953, 1040, 1056, 1179
DpnI GATC 8 cut(s) 153, 204, 543, 609, 888, 1002, 1069, 1104
DpnII GATC 8 cut(s) 151, 202, 541, 607, 886, 1000, 1067, 1102
DraIII CACNNNGTG 1 cut(s) 956
Eam1104I CTCTTC 2 cut(s) 750, 843
EarI CTCTTC 2 cut(s) 750, 843
Eco130I CCWWGG 5 cut(s) 104, 476, 707, 924, 1139
Eco24I GRGCYC 1 cut(s) 461
Eco31I GGTCTC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 64
EcoT14I CCWWGG 5 cut(s) 104, 476, 707, 924, 1139
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 461
ErhI CCWWGG 5 cut(s) 104, 476, 707, 924, 1139
FaeI CATG 9 cut(s) 144, 158, 166, 355, 466, 553, 569, 619, 1159
FalI AAGNNNNNCTT 4 cut(s) 765, 797, 892, 924
FaqI GGGAC 1 cut(s) 322
FatI CATG 9 cut(s) 140, 154, 162, 351, 462, 549, 565, 615, 1155
FauNDI CATATG 1 cut(s) 133
FbaI TGATCA 2 cut(s) 151, 1102
Fnu4HI GCNGC 2 cut(s) 61, 451
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 2 cut(s) 61, 451
FspBI CTAG 2 cut(s) 105, 758
GluI GCNGC 2 cut(s) 61, 451
HaeIII GGCC 2 cut(s) 654, 1138
HapII CCGG 3 cut(s) 95, 292, 407
Hin1II CATG 9 cut(s) 144, 158, 166, 355, 466, 553, 569, 619, 1159
HinfI GANTC 1 cut(s) 335
HpaII CCGG 3 cut(s) 95, 292, 407
HphI GGTGA 1 cut(s) 666
Hpy166II GTNNAC 1 cut(s) 815
Hpy188I TCNGA 4 cut(s) 202, 345, 438, 1102
Hpy188III TCNNGA 5 cut(s) 155, 188, 206, 245, 967
Hpy8I GTNNAC 1 cut(s) 815
HpyAV CCTTC 3 cut(s) 271, 350, 687
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 427
HpyF10VI GCNNNNNNNGC 5 cut(s) 322, 407, 456, 689, 1175
HpyF3I CTNAG 5 cut(s) 858, 953, 1040, 1056, 1179
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 9 cut(s) 144, 158, 166, 355, 466, 553, 569, 619, 1159
Ksp22I TGATCA 2 cut(s) 151, 1102
Kzo9I GATC 8 cut(s) 151, 202, 541, 607, 886, 1000, 1067, 1102
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 2 cut(s) 562, 910
Lsp1109I GCAGC 2 cut(s) 72, 462
LweI GCATC 3 cut(s) 127, 181, 381
MaeI CTAG 2 cut(s) 105, 758
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 143
MalI GATC 8 cut(s) 153, 204, 543, 609, 888, 1002, 1069, 1104
MboI GATC 8 cut(s) 151, 202, 541, 607, 886, 1000, 1067, 1102
MboII GAAGA 6 cut(s) 73, 422, 462, 737, 860, 1000
MhlI GDGCHC 4 cut(s) 40, 94, 461, 907
MluCI AATT 7 cut(s) 73, 196, 218, 309, 499, 666, 761
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 6 cut(s) 34, 414, 513, 568, 581, 729
Mph1103I ATGCAT 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 1080
MspA1I CMGCKG 1 cut(s) 700
MspI CCGG 3 cut(s) 95, 292, 407
MspR9I CCNGG 3 cut(s) 66, 95, 96
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 5 cut(s) 322, 407, 456, 689, 1175
NciI CCSGG 2 cut(s) 95, 96
NdeI CATATG 1 cut(s) 133
NdeII GATC 8 cut(s) 151, 202, 541, 607, 886, 1000, 1067, 1102
NlaIII CATG 9 cut(s) 144, 158, 166, 355, 466, 553, 569, 619, 1159
NlaIV GGNNCC 1 cut(s) 705
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 2 cut(s) 144, 569
NspV TTCGAA 2 cut(s) 222, 497
OliI CACNNNNGTG 1 cut(s) 1080
PagI TCATGA 1 cut(s) 154
PciSI GCTCTTC 1 cut(s) 750
PflFI GACNNNGTC 1 cut(s) 352
PkrI GCNGC 2 cut(s) 62, 452
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PsiI TTATAA 2 cut(s) 798, 1164
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 705
PspPI GGNCC 1 cut(s) 289
PstI CTGCAG 3 cut(s) 694, 842, 1082
PsyI GACNNNGTC 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 4 cut(s) 161, 515, 913, 1128
RsaNI GTAC 4 cut(s) 160, 514, 912, 1127
RseI CAYNNNNRTG 1 cut(s) 1080
SapI GCTCTTC 1 cut(s) 750
SatI GCNGC 2 cut(s) 61, 451
Sau3AI GATC 8 cut(s) 151, 202, 541, 607, 886, 1000, 1067, 1102
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 3 cut(s) 66, 95, 96
SduI GDGCHC 4 cut(s) 40, 94, 461, 907
SfaNI GCATC 3 cut(s) 127, 181, 381
SfcI CTRYAG 4 cut(s) 85, 690, 838, 1078
SfuI TTCGAA 2 cut(s) 222, 497
SinI GGWCC 1 cut(s) 289
SmaI CCCGGG 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 1080
Sse9I AATT 7 cut(s) 73, 196, 218, 309, 499, 666, 761
SspI AATATT 1 cut(s) 1017
SspMI CTAG 2 cut(s) 105, 758
StyD4I CCNGG 3 cut(s) 64, 93, 94
StyI CCWWGG 5 cut(s) 104, 476, 707, 924, 1139
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 430
TaqI TCGA 3 cut(s) 207, 222, 497
TasI AATT 7 cut(s) 73, 196, 218, 309, 499, 666, 761
TatI WGTACW 3 cut(s) 159, 911, 1126
TscAI CASTG 5 cut(s) 154, 332, 957, 1082, 1087
TseI GCWGC 2 cut(s) 60, 450
TspDTI ATGAA 2 cut(s) 422, 538
TspMI CCCGGG 1 cut(s) 94
TspRI CASTG 5 cut(s) 154, 332, 957, 1082, 1087
Tth111I GACNNNGTC 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 3 cut(s) 218, 499, 761
XceI RCATGY 2 cut(s) 144, 569
XmaI CCCGGG 1 cut(s) 94
XmaJI CCTAGG 1 cut(s) 104
XspI CTAG 2 cut(s) 105, 758
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.