Rh6BG092800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016253
Physical Location & Seq
Forward (+)
14643164 .. 14644502
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG092800.1

Sequence Viewer

Length: 1011 bp
ATGGAAATCCCAGATGATCACTTTCCCTATGTTAATATTAGTGCACCCACCAGTCCTGGTATATGTAGCCCTCACAATAACCTCTACTTCTACAGTGTTCCGAGTAGTCCTACCAGAGAAACCTCAACTGGTACTAGTCCATTAATTGGTTACCAAACTGATCTAAATGAGTGCCCTACACCAATGTCATACCACGACGCCAATGCCTATCTCGATGACTTTGAGTTTGAAACCGGTCTAAGTTTTAGTCTTGATGTTGGTGATCAAAGTCTGGTCCAATCGAGCCCGTTTGGTCATGATAGAAAGCCAAGGCAGCGCGGGGATTCACTTCCGACCAGCATGGCATTTGCAGATGAGCTTTTCTGTGATGGGAAAGTCATGCCGCTTGCCCCTCCACTCAAGCTTCCACCGCGGCTTCAGAGGAACAGAAATGAAAAGCTGGCAAGCCAAGCAGAAACTGGTGCGTCTGTCCCGGGGTCTCCGAGTAATTTCGTGCTTAAATTGCCATTTGGATATAAGAGGTTGTGGAATGATGATTTTGATCCATTCATGGCGGCATTGAAAAATGTCAAGGAGGAAAAGAAGGAGAAGGCTTCAGCTGCTTCGCCCTCATATGCTACGAACAATCAGACTACGAATGAGCCTGGGGACGAAGACGCAACAACTTCTGCGCCTGAACCGATATCGAGAGAAATGGGTGGACAAATTGTTCCAAAGAGGCAGCTGACTCAGCCGAAAGGAGTCGAGTTTGCAAGGCAAGTCAGACTTATTCAAATGGGCCAGATGAGTAAGTTGGACAAGTTAGGGAAGCAAAGTGAAGGAGATGAGAAAGCAGAATCAATGAGGAAGAAGCCAACATTTCTAAGGAGACTAAGCTTTAAGTCTGGCAGAGCAGCTCATTGTGAGGAGAAAAGGGTATCTCATTCTCGTCCTCATTCTCAACTAAGCAAGATGGCATTGATGAACTACAAGCCCAGAGGGTTACTTTGCTTGGGTTATAAGACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

336

Amino Acids

37.33

Weight (kDa)

8.46

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g06740
malus_domestica MD00G1045800.v1.1 MD03G1164300.v1.1
prunus_persica Prupe.4G260600_v2.0.a1
pyrus_communis pycom12561g00260
rosa_chinensis RchiOBHm_Chr6g0258931
rosa_laevigata RLG00000014570
rosa_multiflora Rmu_sc0004347.1_g000009
rosa_roxburghii Rroxscaffold_7G00206180
rosa_rugosa Rorug05G0584500
rosa_samantha Rh6AG100900 Rh6BG092800 Rh6CG090100 Rh6DG084300
rosa_wichuraiana Rw6G008760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AccB7I CCANNNNNTGG 1 cut(s) 146
AccII CGCG 2 cut(s) 318, 412
AciI CCGC 5 cut(s) 318, 383, 410, 412, 554
AclWI GGATC 1 cut(s) 536
AcuI CTGAAG 2 cut(s) 401, 579
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 146
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 3 cut(s) 230, 562, 773
AhlI ACTAGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 55, 643
AloI GAACNNNNNNTCC 2 cut(s) 693, 725
AluBI AGCT 8 cut(s) 358, 403, 439, 599, 724, 876, 896, 1008
AluI AGCT 8 cut(s) 358, 403, 439, 599, 724, 876, 896, 1008
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 483, 862
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 536
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 1 cut(s) 778
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 313, 599, 721, 893
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AseI ATTAAT 1 cut(s) 143
AsiGI ACCGGT 1 cut(s) 233
AspLEI GCGC 2 cut(s) 318, 673
AspS9I GGNCC 2 cut(s) 274, 778
AsuC2I CCSGG 2 cut(s) 473, 474
AsuHPI GGTGA 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 2 cut(s) 46, 176
BanII GRGCYC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 4 cut(s) 325, 586, 733, 905
BccI CCATC 2 cut(s) 362, 946
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 2 cut(s) 57, 645
BclI TGATCA 2 cut(s) 16, 262
BcnI CCSGG 2 cut(s) 473, 474
BcoDI GTCTC 2 cut(s) 483, 862
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 2 cut(s) 135, 1009
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 7 cut(s) 314, 383, 413, 555, 600, 722, 894
BlsI GCNGC 7 cut(s) 315, 384, 414, 556, 601, 723, 895
Bme1390I CCNGG 4 cut(s) 57, 473, 474, 645
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 274, 778
BmrFI CCNGG 4 cut(s) 57, 473, 474, 645
BpiI GAAGAC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 2 cut(s) 473, 474
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 5 cut(s) 308, 410, 472, 473, 644
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 51, 133, 463
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 2 cut(s) 57, 645
BseDI CCNNGG 5 cut(s) 308, 410, 472, 473, 644
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 743
BseNI ACTGG 3 cut(s) 51, 133, 463
BseRI GAGGAG 1 cut(s) 920
BseSI GKGCMC 2 cut(s) 46, 176
BseXI GCAGC 4 cut(s) 325, 586, 733, 905
Bsh1236I CGCG 2 cut(s) 318, 412
BshFI GGCC 1 cut(s) 780
BshTI ACCGGT 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 2 cut(s) 234, 473
BslFI GGGAC 2 cut(s) 455, 662
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 483, 862
BsmFI GGGAC 2 cut(s) 455, 662
BsnI GGCC 1 cut(s) 780
Bso31I GGTCTC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 3 cut(s) 46, 176, 287
Bsp143I GATC 4 cut(s) 16, 160, 262, 541
BspACI CCGC 5 cut(s) 318, 383, 410, 412, 554
BspANI GGCC 1 cut(s) 780
BspCNI CTCAG 1 cut(s) 742
BspFNI CGCG 2 cut(s) 318, 412
BspHI TCATGA 1 cut(s) 295
BspPI GGATC 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 3 cut(s) 51, 133, 463
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 5 cut(s) 308, 410, 472, 473, 644
BssMI GATC 4 cut(s) 16, 160, 262, 541
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 57, 645
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 387, 441, 445
BstDEI CTNAG 5 cut(s) 239, 729, 863, 872, 944
BstDSI CCRYGG 1 cut(s) 410
BstEII GGTNACC 1 cut(s) 149
BstFNI CGCG 2 cut(s) 318, 412
BstHHI GCGC 2 cut(s) 318, 673
BstKTI GATC 4 cut(s) 19, 163, 265, 544
BstMAI GTCTC 2 cut(s) 483, 862
BstMBI GATC 4 cut(s) 16, 160, 262, 541
BstMWI GCNNNNNNNGC 6 cut(s) 313, 409, 449, 502, 599, 730
BstNI CCWGG 2 cut(s) 57, 645
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 4 cut(s) 55, 471, 472, 643
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 2 cut(s) 46, 176
BstUI CGCG 2 cut(s) 318, 412
BstV1I GCAGC 4 cut(s) 325, 586, 733, 905
BstV2I GAAGAC 1 cut(s) 660
BsuRI GGCC 1 cut(s) 780
BtgI CCRYGG 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 3 cut(s) 387, 441, 445
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 295
CfoI GCGC 2 cut(s) 318, 673
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 274, 778
Cfr42I CCGCGG 1 cut(s) 413
Cfr9I CCCGGG 1 cut(s) 472
CseI GACGC 3 cut(s) 206, 453, 665
Csp6I GTAC 1 cut(s) 132
CspAI ACCGGT 1 cut(s) 233
CviAII CATG 4 cut(s) 296, 340, 379, 550
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 5 cut(s) 239, 729, 863, 872, 944
DpnI GATC 4 cut(s) 18, 162, 264, 543
DpnII GATC 4 cut(s) 16, 160, 262, 541
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 401, 579
Eco88I CYCGRG 1 cut(s) 472
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 55, 643
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 4 cut(s) 299, 343, 382, 553
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 2 cut(s) 455, 662
FatI CATG 4 cut(s) 295, 339, 378, 549
FauI CCCGC 1 cut(s) 311
FauNDI CATATG 1 cut(s) 613
FbaI TGATCA 2 cut(s) 16, 262
Fnu4HI GCNGC 7 cut(s) 314, 383, 413, 555, 600, 722, 894
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 7 cut(s) 314, 383, 413, 555, 600, 722, 894
FspBI CTAG 2 cut(s) 135, 1009
GlaI GCGC 2 cut(s) 317, 672
GluI GCNGC 7 cut(s) 314, 383, 413, 555, 600, 722, 894
HaeIII GGCC 1 cut(s) 780
HapII CCGG 2 cut(s) 234, 473
HgaI GACGC 3 cut(s) 206, 453, 665
HhaI GCGC 2 cut(s) 318, 673
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 4 cut(s) 299, 343, 382, 553
Hin6I GCGC 2 cut(s) 316, 671
HinP1I GCGC 2 cut(s) 316, 671
HindIII AAGCTT 2 cut(s) 401, 874
HinfI GANTC 4 cut(s) 323, 727, 741, 836
HpaII CCGG 2 cut(s) 234, 473
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 44, 701
Hpy188I TCNGA 6 cut(s) 102, 333, 420, 483, 630, 764
Hpy188III TCNNGA 4 cut(s) 212, 251, 296, 687
Hpy8I GTNNAC 2 cut(s) 44, 701
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 577, 583, 812
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 44, 350, 752
HpyF10VI GCNNNNNNNGC 6 cut(s) 313, 409, 449, 502, 599, 730
HpyF3I CTNAG 5 cut(s) 239, 729, 863, 872, 944
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 4 cut(s) 299, 343, 382, 553
HspAI GCGC 2 cut(s) 316, 671
Ksp22I TGATCA 2 cut(s) 16, 262
KspI CCGCGG 1 cut(s) 413
Kzo9I GATC 4 cut(s) 16, 160, 262, 541
Lsp1109I GCAGC 4 cut(s) 325, 586, 733, 905
MaeI CTAG 2 cut(s) 135, 1009
MaeIII GTNAC 2 cut(s) 149, 981
MalI GATC 4 cut(s) 18, 162, 264, 543
MboI GATC 4 cut(s) 16, 160, 262, 541
MboII GAAGA 2 cut(s) 665, 859
MhlI GDGCHC 3 cut(s) 46, 176, 287
MluCI AATT 4 cut(s) 144, 487, 500, 705
MlyI GAGTC 2 cut(s) 721, 750
MmeI TCCRAC 2 cut(s) 356, 774
MseI TTAA 4 cut(s) 33, 143, 498, 879
MspA1I CMGCKG 3 cut(s) 412, 599, 724
MspI CCGG 2 cut(s) 234, 473
MspR9I CCNGG 4 cut(s) 57, 473, 474, 645
MvaI CCWGG 2 cut(s) 57, 645
MvnI CGCG 2 cut(s) 318, 412
MwoI GCNNNNNNNGC 6 cut(s) 313, 409, 449, 502, 599, 730
NciI CCSGG 2 cut(s) 473, 474
NdeI CATATG 1 cut(s) 613
NdeII GATC 4 cut(s) 16, 160, 262, 541
NlaIII CATG 4 cut(s) 299, 343, 382, 553
PagI TCATGA 1 cut(s) 295
PfeI GAWTC 2 cut(s) 323, 836
PflMI CCANNNNNTGG 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 233
PkrI GCNGC 7 cut(s) 315, 384, 414, 556, 601, 723, 895
PleI GAGTC 2 cut(s) 721, 749
PpsI GAGTC 2 cut(s) 721, 749
PshBI ATTAAT 1 cut(s) 143
PsiI TTATAA 1 cut(s) 999
Psp6I CCWGG 2 cut(s) 55, 643
PspEI GGTNACC 1 cut(s) 149
PspGI CCWGG 2 cut(s) 55, 643
PspPI GGNCC 2 cut(s) 274, 778
PstNI CAGNNNCTG 1 cut(s) 458
PvuII CAGCTG 2 cut(s) 599, 724
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SacII CCGCGG 1 cut(s) 413
SaqAI TTAA 4 cut(s) 33, 143, 498, 879
SatI GCNGC 7 cut(s) 314, 383, 413, 555, 600, 722, 894
Sau3AI GATC 4 cut(s) 16, 160, 262, 541
Sau96I GGNCC 2 cut(s) 274, 778
SchI GAGTC 2 cut(s) 721, 750
ScrFI CCNGG 4 cut(s) 57, 473, 474, 645
SduI GDGCHC 3 cut(s) 46, 176, 287
SfcI CTRYAG 1 cut(s) 91
Sfr303I CCGCGG 1 cut(s) 413
SgrBI CCGCGG 1 cut(s) 413
SinI GGWCC 1 cut(s) 274
SmaI CCCGGG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 4 cut(s) 144, 487, 500, 705
SsiI CCGC 5 cut(s) 318, 383, 410, 412, 554
SspI AATATT 1 cut(s) 37
SspMI CTAG 2 cut(s) 135, 1009
StyD4I CCNGG 4 cut(s) 55, 471, 472, 643
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 4 cut(s) 213, 281, 686, 744
TasI AATT 4 cut(s) 144, 487, 500, 705
TauI GCSGC 3 cut(s) 385, 415, 557
TfiI GAWTC 2 cut(s) 323, 836
Tru1I TTAA 4 cut(s) 33, 143, 498, 879
Tru9I TTAA 4 cut(s) 33, 143, 498, 879
TscAI CASTG 1 cut(s) 100
TseI GCWGC 4 cut(s) 313, 599, 721, 893
TspDTI ATGAA 3 cut(s) 447, 538, 977
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 146
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 274
VspI ATTAAT 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmaI CCCGGG 1 cut(s) 472
XspI CTAG 2 cut(s) 135, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.