Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010847

Physical Location & Seq

Genomic Coordinates Forward (+)

5812545 .. 5815200

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCTCTCCTAAGTAAAGCTGGGAGTCTTCTTAGGCAGACTGCAAACAGGCAGTCCATCCATCACTCGATACGATGCCCATCGTCCATGGGAACCCAACAAGCCTTGAGAGGTCCGACAGATCAACAAAGTGTGAGGACAGCATGCACAAAATCTGGTGAAGTTGATGGAAAAACCTTCATGGACAGTGATAGCAGAAGATCTACAGGACTTGGATTCACTACTTCTGGTGCCATCTTGCACATGGAGGTGCAGGATCTCCATAGTAGGTTGATCAGATGTGAACACAAGGTTGTAGGGTTGGCTATCAACGATATTATTGGTCAGAGAAGAAGCTTTTCCAGTGGAGCTACTGGAAACGCTGGGGGTGGTAACAAGCCACAAATCAATTCGGCACGTCCAAAACATGACAGAACTGCAGCAAGTTACCTACCAAATCTATCTGTGTTCTCTCACATAACTTCAGGGATCGAAGGGATCATGGCGGATTATGTTCACCAAAAAATGACCAAAGAATTTTTCTCTTTATGTTTCAGCTTGTTCTTTTTGATCATCATGAAAGATCTTTTCTTGTTTCTCGTTTTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0016020 GO:0032991 GO:0044424 GO:0044425 GO:0044464 GO:0045273 GO:0070469 GO:0098796 GO:0098803

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

HSP70 Sdh_cyt

Protein Analysis

197

Amino Acids

21.48

Weight (kDa)

9.69

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32210 AT5G09600 AT5G09600 AT5G09600
fragaria_vesca	FvH4_2g07040 FvH4_2g07040 FvH4_2g07040 FvH4_2g07040 FvH4_2g07040
rosa_chinensis	RchiOBHm_Chr6g0275631
rosa_laevigata	RLG00000013455
rosa_multiflora	Rmu_ssc0000162.1_g000018
rosa_roxburghii	Rroxscaffold_7G00193170
rosa_rugosa	Rorug06G0094300 Rorug06G0094400
rosa_samantha	Rh6AG206600 Rh6BG209600 Rh6CG212300 Rh6DG202700
rosa_wichuraiana	Rw6G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	3 cut(s)	264, 476, 485
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	447
AjiI	CACGTC	1 cut(s)	398
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	4 cut(s)	20, 336, 350, 537
AluI	AGCT	4 cut(s)	20, 336, 350, 537
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	264, 476, 485
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	515
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
Asp700I	GAANNNNTTC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	170, 488
AvaII	GGWCC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	5 cut(s)	65, 69, 88, 161, 242
BclI	TGATCA	2 cut(s)	273, 549
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	204, 417
BglII	AGATCT	2 cut(s)	200, 562
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	94, 232
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	342, 358
Bse8I	GATNNNNATC	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	342, 358
BseXI	GCAGC	1 cut(s)	431
BseYI	CCCAGC	2 cut(s)	20, 362
BsgI	GTGCAG	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	9
Bsp143I	GATC	8 cut(s)	121, 200, 256, 273, 468, 477, 549, 562
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	485
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	94, 232
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	3 cut(s)	264, 476, 485
BspT107I	GGYRCC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	342, 358
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	8 cut(s)	121, 200, 256, 273, 468, 477, 549, 562
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	3 cut(s)	11, 32, 588
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	8 cut(s)	124, 203, 259, 276, 471, 480, 552, 565
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	8 cut(s)	121, 200, 256, 273, 468, 477, 549, 562
BstNSI	RCATGY	1 cut(s)	147
BstSFI	CTRYAG	2 cut(s)	204, 417
BstV1I	GCAGC	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	3 cut(s)	200, 256, 562
BstYI	RGATCY	3 cut(s)	200, 256, 562
BtgI	CCRYGG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	193, 349
Cac8I	GCNNGC	1 cut(s)	145
CciI	TCATGA	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	7 cut(s)	88, 144, 181, 244, 407, 481, 556
CviJI	RGCY	7 cut(s)	20, 104, 305, 336, 350, 379, 537
CviKI_1	RGCY	7 cut(s)	20, 104, 305, 336, 350, 379, 537
DdeI	CTNAG	3 cut(s)	11, 32, 588
DpnI	GATC	8 cut(s)	123, 202, 258, 275, 470, 479, 551, 564
DpnII	GATC	8 cut(s)	121, 200, 256, 273, 468, 477, 549, 562
EciI	GGCGGA	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	7 cut(s)	91, 147, 184, 247, 410, 484, 559
FatI	CATG	7 cut(s)	87, 143, 180, 243, 406, 480, 555
FbaI	TGATCA	2 cut(s)	273, 549
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	420
GluI	GCNGC	1 cut(s)	420
GsaI	CCCAGC	2 cut(s)	24, 366
Hin1II	CATG	7 cut(s)	91, 147, 184, 247, 410, 484, 559
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	2 cut(s)	25, 216
HphI	GGTGA	2 cut(s)	170, 488
Hpy166II	GTNNAC	2 cut(s)	284, 496
Hpy188I	TCNGA	3 cut(s)	117, 278, 327
Hpy188III	TCNNGA	1 cut(s)	556
Hpy8I	GTNNAC	2 cut(s)	284, 496
HpyAV	CCTTC	2 cut(s)	187, 467
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	44, 147, 241, 253, 419
HpyF3I	CTNAG	3 cut(s)	11, 32, 588
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	7 cut(s)	91, 147, 184, 247, 410, 484, 559
Ksp22I	TGATCA	2 cut(s)	273, 549
Kzo9I	GATC	8 cut(s)	121, 200, 256, 273, 468, 477, 549, 562
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	1 cut(s)	65
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	371, 425
MalI	GATC	8 cut(s)	123, 202, 258, 275, 470, 479, 551, 564
MboI	GATC	8 cut(s)	121, 200, 256, 273, 468, 477, 549, 562
MboII	GAAGA	3 cut(s)	20, 210, 342
MflI	RGATCY	3 cut(s)	200, 256, 562
MluCI	AATT	2 cut(s)	388, 515
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	3 cut(s)	104, 129, 241
MroXI	GAANNNNTTC	1 cut(s)	337
MslI	CAYNNNNRTG	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	8 cut(s)	121, 200, 256, 273, 468, 477, 549, 562
NlaIII	CATG	7 cut(s)	91, 147, 184, 247, 410, 484, 559
NlaIV	GGNNCC	2 cut(s)	94, 232
NspI	RCATGY	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	147
PagI	TCATGA	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PspFI	CCCAGC	2 cut(s)	20, 362
PspN4I	GGNNCC	2 cut(s)	94, 232
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	3 cut(s)	200, 256, 562
RseI	CAYNNNNRTG	1 cut(s)	248
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	8 cut(s)	121, 200, 256, 273, 468, 477, 549, 562
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	2 cut(s)	204, 417
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	2 cut(s)	388, 515
SsiI	CCGC	1 cut(s)	485
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	68, 471
TasI	AATT	2 cut(s)	388, 515
TfiI	GAWTC	1 cut(s)	216
TscAI	CASTG	2 cut(s)	193, 349
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	2 cut(s)	169, 572
TspRI	CASTG	2 cut(s)	193, 349
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.