Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010847

Physical Location & Seq

Genomic Coordinates Reverse (-)

12631359 .. 12633226

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0094400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTACACATTCAGTAACTGAGCTTGTGCAGGCAGTGAGGAGACCGAGGTCACTTAGTGAATCGACAAATCTTCCCTTTAGAAAGTCTGGAGGTGGCGGTAGGGGAGAGAAGGTAATAGAAGCTCTTGCGAGGAGAAACTCTGAGAGTTTGCCTAGGAGAAACTCAGAGAATGTGGCACCACCTAGACGTAACTCACTTAGGGATGCTAAAATCTCAATGCAGTGTATCAATGAGGGTTATTCGGAAAAGTCAAACTCAAAGCCAAGGCTGCCTGATAATCCCATTATATTTGCATCCAACAGCTTCTTAGAGCTAACGGAGTACAGCTGCGAAGAAATATTGGGAAGAAATTGCAGATTCCTTCAAGGACCTGAGACTGATCCAGCAACTGTGAAAAAAATAAGAGAGGCAATTGACAACCAGACTGACGTGACTGTACAACTCATCAATTACACGAAAAGCGGCAAAAAGTTCTGGAATGTCTTTCATCTGCAGCTTATGCGTGATCAAAAGGGAGAAGTACAGTATTTTATTGGAGTACAACTTGATGGCAGTCAGCACATTGAGCCTCTGCATAACTCTATTCCTGAAGTTACAGTAAAAGAGAGTGAAAAACTGGTCAAAGAGACTGCAGTTAATGTTGATGAGGCAGCAAGAGAACTTCCAGATGCCAATATGAAACCAGAAGATTTATGGATGAATCATTCGAAGGTCATTCATCCAAAGCCTCATAGACGGGACAGCCCCCCTTGGAGAGCTATTCAAAAGATTCTAGACAGTGGAGAACAGATAAGATTGAAACATTTTAAGCCTATAAAGCCCTTGGGATCTGGTGACACTACACCAATTTCGGAATCAGACAACACATATCAGACGACAACAAACATTTTAACTGTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0016020 GO:0032991 GO:0044424 GO:0044425 GO:0044464 GO:0045273 GO:0070469 GO:0098796 GO:0098803

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

HSP70 Sdh_cyt

Protein Analysis

301

Amino Acids

34.04

Weight (kDa)

8.86

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_9	PF13426	92 - 184	2.5e-18	PAS domain
PAS_3	PF08447	96 - 181	8.1e-07	PAS fold
PAS	PF00989	96 - 184	4.1e-06	PAS fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32210 AT5G09600 AT5G09600 AT5G09600
fragaria_vesca	FvH4_2g07040 FvH4_2g07040 FvH4_2g07040 FvH4_2g07040 FvH4_2g07040
rosa_chinensis	RchiOBHm_Chr6g0275631
rosa_laevigata	RLG00000013455
rosa_multiflora	Rmu_ssc0000162.1_g000018
rosa_roxburghii	Rroxscaffold_7G00193170
rosa_rugosa	Rorug06G0094300 Rorug06G0094400
rosa_samantha	Rh6AG206600 Rh6BG209600 Rh6CG212300 Rh6DG202700
rosa_wichuraiana	Rw6G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AciI	CCGC	2 cut(s)	99, 465
AclWI	GGATC	2 cut(s)	377, 838
AcuI	CTGAAG	1 cut(s)	612
AdeI	CACNNNGTG	1 cut(s)	59
AfaI	GTAC	4 cut(s)	326, 441, 525, 543
AgsI	TTSAA	3 cut(s)	368, 767, 802
AjiI	CACGTC	1 cut(s)	433
AluBI	AGCT	7 cut(s)	25, 125, 306, 316, 330, 499, 761
AluI	AGCT	7 cut(s)	25, 125, 306, 316, 330, 499, 761
Alw26I	GTCTC	3 cut(s)	37, 371, 623
AlwI	GGATC	2 cut(s)	377, 838
AlwNI	CAGNNNCTG	2 cut(s)	20, 392
ApeKI	GCWGC	4 cut(s)	271, 330, 496, 653
AspA2I	CCTAGG	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	848
AsuII	TTCGAA	1 cut(s)	710
AvaII	GGWCC	1 cut(s)	371
AvrII	CCTAGG	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	258, 317, 508, 665
BccI	CCATC	1 cut(s)	545
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	3 cut(s)	37, 371, 623
BfaI	CTAG	3 cut(s)	156, 186, 776
BfmI	CTRYAG	2 cut(s)	494, 633
BisI	GCNGC	5 cut(s)	272, 331, 466, 497, 654
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	5 cut(s)	273, 332, 467, 498, 655
Bme18I	GGWCC	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	3 cut(s)	196, 305, 661
BoxI	GACNNNNGTC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	710
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	5 cut(s)	47, 155, 266, 752, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse1I	ACTGG	1 cut(s)	624
BseDI	CCNNGG	5 cut(s)	47, 155, 266, 752, 825
BseGI	GGATG	4 cut(s)	211, 296, 705, 721
BseMII	CTCAG	4 cut(s)	12, 135, 180, 366
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	2 cut(s)	55, 148
BseXI	GCAGC	4 cut(s)	258, 317, 508, 665
BsgI	GTGCAG	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	755
BsmAI	GTCTC	3 cut(s)	37, 371, 623
BsmFI	GGGAC	1 cut(s)	755
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	710
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	382, 508, 830
BspACI	CCGC	2 cut(s)	99, 465
BspCNI	CTCAG	4 cut(s)	13, 136, 179, 367
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	2 cut(s)	498, 637
BspPI	GGATC	2 cut(s)	377, 838
BspT104I	TTCGAA	1 cut(s)	710
BspT107I	GGYRCC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	5 cut(s)	47, 155, 266, 752, 825
BssMI	GATC	3 cut(s)	382, 508, 830
BssT1I	CCWWGG	4 cut(s)	155, 266, 752, 825
Bst4CI	ACNGT	6 cut(s)	394, 439, 528, 601, 782, 898
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstAUI	TGTACA	1 cut(s)	439
BstBI	TTCGAA	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	7 cut(s)	21, 56, 144, 166, 200, 310, 375
BstF5I	GGATG	4 cut(s)	211, 296, 705, 721
BstKTI	GATC	3 cut(s)	385, 511, 833
BstMAI	GTCTC	3 cut(s)	37, 371, 623
BstMBI	GATC	3 cut(s)	382, 508, 830
BstMWI	GCNNNNNNNGC	4 cut(s)	271, 502, 568, 820
BstPAI	GACNNNNGTC	1 cut(s)	49
BstSFI	CTRYAG	2 cut(s)	494, 633
BstV1I	GCAGC	4 cut(s)	258, 317, 508, 665
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	4 cut(s)	211, 296, 705, 721
BtsI	GCAGTG	2 cut(s)	42, 230
BtsIMutI	CAGTG	3 cut(s)	42, 230, 787
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	2 cut(s)	20, 392
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	4 cut(s)	325, 440, 524, 542
CviQI	GTAC	4 cut(s)	325, 440, 524, 542
DdeI	CTNAG	7 cut(s)	21, 56, 144, 166, 200, 310, 375
DpnI	GATC	3 cut(s)	384, 510, 832
DpnII	GATC	3 cut(s)	382, 508, 830
DraIII	CACNNNGTG	1 cut(s)	59
Eco130I	CCWWGG	4 cut(s)	155, 266, 752, 825
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	371
EcoT14I	CCWWGG	4 cut(s)	155, 266, 752, 825
ErhI	CCWWGG	4 cut(s)	155, 266, 752, 825
FaiI	YATR	8 cut(s)	290, 503, 579, 680, 697, 735, 818, 871
FaqI	GGGAC	1 cut(s)	755
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	5 cut(s)	272, 331, 466, 497, 654
FokI	GGATG	4 cut(s)	218, 283, 708, 712
Fsp4HI	GCNGC	5 cut(s)	272, 331, 466, 497, 654
FspBI	CTAG	3 cut(s)	156, 186, 776
GluI	GCNGC	5 cut(s)	272, 331, 466, 497, 654
GsuI	CTGGAG	1 cut(s)	111
HinfI	GANTC	5 cut(s)	62, 360, 703, 772, 857
HphI	GGTGA	1 cut(s)	848
Hpy188I	TCNGA	7 cut(s)	145, 169, 247, 856, 862, 876, 905
Hpy188III	TCNNGA	5 cut(s)	90, 478, 590, 668, 776
HpyAV	CCTTC	3 cut(s)	106, 374, 706
HpyCH4III	ACNGT	6 cut(s)	394, 439, 528, 601, 782, 898
HpyCH4IV	ACGT	2 cut(s)	190, 432
HpyCH4V	TGCA	7 cut(s)	31, 223, 296, 357, 496, 577, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	271, 502, 568, 820
HpyF3I	CTNAG	7 cut(s)	21, 56, 144, 166, 200, 310, 375
HpySE526I	ACGT	2 cut(s)	190, 432
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	382, 508, 830
Lsp1109I	GCAGC	4 cut(s)	258, 317, 508, 665
LweI	GCATC	3 cut(s)	196, 305, 661
MaeI	CTAG	3 cut(s)	156, 186, 776
MaeII	ACGT	2 cut(s)	190, 432
MaeIII	GTNAC	6 cut(s)	16, 51, 191, 433, 595, 836
MalI	GATC	3 cut(s)	384, 510, 832
MboI	GATC	3 cut(s)	382, 508, 830
MboII	GAAGA	4 cut(s)	65, 347, 360, 701
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	830
MluCI	AATT	4 cut(s)	352, 414, 451, 849
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	9 cut(s)	33, 42, 86, 126, 229, 403, 582, 643, 741
MseI	TTAA	3 cut(s)	639, 810, 893
MspA1I	CMGCKG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	271, 502, 568, 820
NdeII	GATC	3 cut(s)	382, 508, 830
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	3 cut(s)	51, 433, 836
NspV	TTCGAA	1 cut(s)	710
PfeI	GAWTC	5 cut(s)	62, 360, 703, 772, 857
PkrI	GCNGC	5 cut(s)	273, 332, 467, 498, 655
PpuMI	RGGWCCY	1 cut(s)	371
PshAI	GACNNNNGTC	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PstI	CTGCAG	2 cut(s)	498, 637
PstNI	CAGNNNCTG	2 cut(s)	20, 392
PsuI	RGATCY	1 cut(s)	830
PvuII	CAGCTG	1 cut(s)	330
RsaI	GTAC	4 cut(s)	326, 441, 525, 543
RsaNI	GTAC	4 cut(s)	325, 440, 524, 542
SaqAI	TTAA	3 cut(s)	639, 810, 893
SatI	GCNGC	5 cut(s)	272, 331, 466, 497, 654
Sau3AI	GATC	3 cut(s)	382, 508, 830
Sau96I	GGNCC	1 cut(s)	371
SfaNI	GCATC	3 cut(s)	196, 305, 661
SfcI	CTRYAG	2 cut(s)	494, 633
SfuI	TTCGAA	1 cut(s)	710
SinI	GGWCC	1 cut(s)	371
Sse9I	AATT	4 cut(s)	352, 414, 451, 849
SsiI	CCGC	2 cut(s)	99, 465
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	3 cut(s)	156, 186, 776
StyI	CCWWGG	4 cut(s)	155, 266, 752, 825
TaaI	ACNGT	6 cut(s)	394, 439, 528, 601, 782, 898
TaiI	ACGT	2 cut(s)	193, 435
TaqI	TCGA	2 cut(s)	65, 710
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	4 cut(s)	352, 414, 451, 849
TatI	WGTACW	4 cut(s)	324, 439, 523, 541
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	5 cut(s)	62, 360, 703, 772, 857
Tru1I	TTAA	3 cut(s)	639, 810, 893
Tru9I	TTAA	3 cut(s)	639, 810, 893
TscAI	CASTG	3 cut(s)	42, 230, 787
TseFI	GTSAC	3 cut(s)	51, 433, 836
TseI	GCWGC	4 cut(s)	271, 330, 496, 653
Tsp45I	GTSAC	3 cut(s)	51, 433, 836
TspDTI	ATGAA	4 cut(s)	479, 695, 710, 716
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	3 cut(s)	42, 230, 787
VpaK11BI	GGWCC	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	3 cut(s)	156, 186, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.