Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000162.1

Orthogroup ID

OG0010847

Physical Location & Seq

Genomic Coordinates Reverse (-)

110625 .. 112473

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000162.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgcctctcctaagtaaagctgggagtatactcaggcagactgcaaacaggcagatcaaatctgagttatcgatccatcaggcaataagatgcacatcatccatggcaagctcagaagccttaagaggtacttcgtatcagacagatcaacaaagtctgaggaaagcttttgcaaaatctggtgaagttgatggaaaaaccttcatggaccatgatactggaagatctacaggacttggattcattacttctagtgccatccagcccttggacgggcaggagctccatggtcgccaagtaaggttgaattattctactgataggcctcgaagtaattttggaagttgttatggtggttacacaggaggtgtagtaggtttttatggtcaacatggttctggatatggttttggtgttggttatggtttgaggtgttatggaggtggagcaggtgacaagttttcatccactggtaatagcagcaactatggtcctggtgcaggagttggtagtgcagtcaactctactattggtagtgctgataaatctggtgttggtcagagaaacagcttttccagtggagctactggaaacactggggttggatatgaaattgcctacacccgcagtggggcaagcacagctgatgaacatggcatcctacccaacacccttcgtccattatccccccatcttcctgtttacaagccacaaatcaattcgacacgttcaatacttgacagaattgcagcatcttacctaaccgctataattttgctgtactatcttgtttgtgtgaaaatgggttctgtttgcttcacctttgagtatttctacaaattcctcttttattcagcaagccttgtccccctctcccttgagctttctgctgtagcaatggcctatcatacgtattatgggatcggtcatctattgaacgactttaagggttttaggtttcttagatttggaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0016020 GO:0032991 GO:0044424 GO:0044425 GO:0044464 GO:0045273 GO:0070469 GO:0098796 GO:0098803

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

HSP70 Sdh_cyt

Protein Analysis

325

Amino Acids

34.79

Weight (kDa)

9.38

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32210 AT5G09600 AT5G09600 AT5G09600
fragaria_vesca	FvH4_2g07040 FvH4_2g07040 FvH4_2g07040 FvH4_2g07040 FvH4_2g07040
rosa_chinensis	RchiOBHm_Chr6g0275631
rosa_laevigata	RLG00000013455
rosa_multiflora	Rmu_ssc0000162.1_g000018
rosa_roxburghii	Rroxscaffold_7G00193170
rosa_rugosa	Rorug06G0094300 Rorug06G0094400
rosa_samantha	Rh6AG206600 Rh6BG209600 Rh6CG212300 Rh6DG202700
rosa_wichuraiana	Rw6G017940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
Acc36I	ACCTGC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	2 cut(s)	625, 765
AclWI	GGATC	2 cut(s)	67, 929
AcsI	RAATTY	1 cut(s)	839
AfaI	GTAC	2 cut(s)	130, 782
AfiI	CCNNNNNNNGG	6 cut(s)	268, 272, 273, 500, 630, 631
AflII	CTTAAG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	3 cut(s)	307, 732, 937
AjnI	CCWGG	1 cut(s)	493
AloI	GAACNNNNNNTCC	2 cut(s)	642, 674
AluBI	AGCT	8 cut(s)	20, 111, 167, 283, 570, 584, 644, 883
AluI	AGCT	8 cut(s)	20, 111, 167, 283, 570, 584, 644, 883
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	67, 929
AoxI	GGCC	2 cut(s)	323, 900
ApeKI	GCWGC	2 cut(s)	480, 749
ApoI	RAATTY	1 cut(s)	839
AspS9I	GGNCC	2 cut(s)	208, 491
AsuHPI	GGTGA	3 cut(s)	194, 464, 811
AvaII	GGWCC	2 cut(s)	208, 491
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	492, 761
BccI	CCATC	4 cut(s)	84, 185, 266, 699
BciT130I	CCWGG	1 cut(s)	495
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	2 cut(s)	228, 891
BfrI	CTTAAG	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	2 cut(s)	481, 750
BlsI	GCNGC	2 cut(s)	482, 751
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	2 cut(s)	208, 491
BmgT120I	GGNCC	2 cut(s)	208, 491
BmrFI	CCNGG	1 cut(s)	495
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	3 cut(s)	80, 666, 761
BmuI	ACTGGG	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	899
Bsa29I	ATCGAT	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	912
BsaBI	GATNNNNATC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	102, 267, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	6 cut(s)	268, 272, 273, 500, 630, 631
Bse1I	ACTGG	5 cut(s)	223, 475, 576, 592, 601
Bse3DI	GCAATG	1 cut(s)	903
Bse8I	GATNNNNATC	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	102, 267, 286
BseGI	GGATG	4 cut(s)	98, 258, 464, 657
BseJI	GATNNNNATC	1 cut(s)	94
BseLI	CCNNNNNNNGG	6 cut(s)	268, 272, 273, 500, 630, 631
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	4 cut(s)	46, 54, 126, 149
BseNI	ACTGG	5 cut(s)	223, 475, 576, 592, 601
BseXI	GCAGC	2 cut(s)	492, 761
BseYI	CCCAGC	1 cut(s)	20
BsgI	GTGCAG	2 cut(s)	519, 534
BshFI	GGCC	2 cut(s)	325, 902
BshVI	ATCGAT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	851
BslI	CCNNNNNNNGG	6 cut(s)	268, 272, 273, 500, 630, 631
BsmFI	GGGAC	1 cut(s)	851
BsnI	GGCC	2 cut(s)	325, 902
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	5 cut(s)	54, 72, 145, 224, 921
Bsp19I	CCATGG	2 cut(s)	102, 286
BspACI	CCGC	2 cut(s)	625, 765
BspANI	GGCC	2 cut(s)	325, 902
BspCNI	CTCAG	4 cut(s)	45, 55, 125, 150
BspDI	ATCGAT	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	67, 929
BspTI	CTTAAG	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	5 cut(s)	223, 475, 576, 592, 601
BssECI	CCNNGG	3 cut(s)	102, 267, 286
BssMI	GATC	5 cut(s)	54, 72, 145, 224, 921
BssNAI	GTATAC	1 cut(s)	29
BssT1I	CCWWGG	3 cut(s)	102, 267, 286
Bst1107I	GTATAC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	495
BstAFI	CTTAAG	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	912
BstC8I	GCNNGC	3 cut(s)	109, 637, 859
BstDEI	CTNAG	6 cut(s)	11, 32, 63, 112, 158, 962
BstDSI	CCRYGG	2 cut(s)	102, 286
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	4 cut(s)	98, 258, 464, 657
BstKTI	GATC	5 cut(s)	57, 75, 148, 227, 924
BstMBI	GATC	5 cut(s)	54, 72, 145, 224, 921
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNI	CCWGG	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	2 cut(s)	228, 891
BstSNI	TACGTA	1 cut(s)	912
BstV1I	GCAGC	2 cut(s)	492, 761
BstX2I	RGATCY	1 cut(s)	224
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	224
BstZ17I	GTATAC	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	325, 902
BsuTUI	ATCGAT	1 cut(s)	71
BtgI	CCRYGG	2 cut(s)	102, 286
BtsCI	GGATG	4 cut(s)	98, 258, 464, 657
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	4 cut(s)	468, 583, 594, 634
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	3 cut(s)	109, 637, 859
Cfr13I	GGNCC	2 cut(s)	208, 491
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	129, 781
CviAII	CATG	6 cut(s)	103, 205, 212, 287, 392, 653
CviQI	GTAC	2 cut(s)	129, 781
DdeI	CTNAG	6 cut(s)	11, 32, 63, 112, 158, 962
DpnI	GATC	5 cut(s)	56, 74, 147, 226, 923
DpnII	GATC	5 cut(s)	54, 72, 145, 224, 921
Ecl136II	GAGCTC	1 cut(s)	283
Eco105I	TACGTA	1 cut(s)	912
Eco130I	CCWWGG	3 cut(s)	102, 267, 286
Eco147I	AGGCCT	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	208, 491
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	3 cut(s)	102, 267, 286
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	3 cut(s)	102, 267, 286
FaeI	CATG	6 cut(s)	106, 208, 215, 290, 395, 656
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FaqI	GGGAC	1 cut(s)	851
FatI	CATG	6 cut(s)	102, 204, 211, 286, 391, 652
FauI	CCCGC	1 cut(s)	632
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	481, 750
FokI	GGATG	4 cut(s)	85, 245, 451, 644
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	481, 750
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	2 cut(s)	481, 750
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	325, 902
Hin1II	CATG	6 cut(s)	106, 208, 215, 290, 395, 656
HincII	GTYRAC	2 cut(s)	389, 520
HindII	GTYRAC	2 cut(s)	389, 520
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	240
HphI	GGTGA	3 cut(s)	194, 464, 811
Hpy166II	GTNNAC	4 cut(s)	29, 389, 520, 703
Hpy188I	TCNGA	5 cut(s)	64, 115, 141, 159, 561
Hpy188III	TCNNGA	1 cut(s)	399
Hpy8I	GTNNAC	4 cut(s)	29, 389, 520, 703
HpyAV	CCTTC	2 cut(s)	211, 683
HpyCH4IV	ACGT	2 cut(s)	727, 911
HpyCH4V	TGCA	6 cut(s)	44, 93, 173, 500, 515, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	6 cut(s)	11, 32, 63, 112, 158, 962
HpySE526I	ACGT	2 cut(s)	727, 911
Hsp92II	CATG	6 cut(s)	106, 208, 215, 290, 395, 656
Kzo9I	GATC	5 cut(s)	54, 72, 145, 224, 921
LmnI	GCTCC	4 cut(s)	280, 288, 446, 581
Lsp1109I	GCAGC	2 cut(s)	492, 761
LweI	GCATC	3 cut(s)	80, 666, 761
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	2 cut(s)	727, 911
MaeIII	GTNAC	2 cut(s)	356, 452
MalI	GATC	5 cut(s)	56, 74, 147, 226, 923
MboI	GATC	5 cut(s)	54, 72, 145, 224, 921
MboII	GAAGA	2 cut(s)	234, 686
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	7 cut(s)	307, 334, 612, 718, 744, 771, 839
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	9 cut(s)	15, 119, 153, 336, 359, 423, 434, 854, 881
MseI	TTAA	2 cut(s)	122, 945
MspA1I	CMGCKG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	641
NcoI	CCATGG	2 cut(s)	102, 286
NdeII	GATC	5 cut(s)	54, 72, 145, 224, 921
NlaIII	CATG	6 cut(s)	106, 208, 215, 290, 395, 656
NmuCI	GTSAC	1 cut(s)	452
PaqCI	CACCTGC	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	482, 751
Ppu21I	YACGTR	1 cut(s)	912
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	493
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	493
PspPI	GGNCC	2 cut(s)	208, 491
PsuI	RGATCY	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	2 cut(s)	130, 782
RsaNI	GTAC	2 cut(s)	129, 781
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	122, 945
SatI	GCNGC	2 cut(s)	481, 750
Sau3AI	GATC	5 cut(s)	54, 72, 145, 224, 921
Sau96I	GGNCC	2 cut(s)	208, 491
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	3 cut(s)	80, 666, 761
SfcI	CTRYAG	2 cut(s)	228, 891
SinI	GGWCC	2 cut(s)	208, 491
SmlI	CTYRAG	2 cut(s)	121, 878
SmoI	CTYRAG	2 cut(s)	121, 878
SnaBI	TACGTA	1 cut(s)	912
Sse9I	AATT	7 cut(s)	307, 334, 612, 718, 744, 771, 839
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	2 cut(s)	625, 765
SspMI	CTAG	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	3 cut(s)	102, 267, 286
TaiI	ACGT	2 cut(s)	730, 914
TaqI	TCGA	3 cut(s)	71, 328, 722
TaqII	GACCGA	1 cut(s)	914
TasI	AATT	7 cut(s)	307, 334, 612, 718, 744, 771, 839
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	122, 945
Tru9I	TTAA	2 cut(s)	122, 945
TscAI	CASTG	4 cut(s)	475, 583, 601, 634
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	2 cut(s)	480, 749
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	5 cut(s)	193, 232, 453, 624, 663
TspRI	CASTG	4 cut(s)	475, 583, 601, 634
Van91I	CCANNNNNTGG	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	208, 491
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	1 cut(s)	839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	28
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.