RLG00000013455
HSP70 Family

succinate dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010847
Physical Location & Seq
Forward (+)
31700521 .. 31704863
4343 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013455

Sequence Viewer

Length: 1116 bp
ATGAATTTTCCATCTTCATGTGAGATCAAAGGAATATTCCAGACCGAACTTGAGGACTTGAGGGAGGCACTAACTTTGTTGCCTGCGGCAAGACTTGTGCATACAAGAAGAGAGAGTCGAGCAGACAAGGCGATTGCAATGCCTCTCCTAAGTAAAGCTGGGAGTATACTCAGGCAGACTGCAAACAGGCAGATCAAATCTGAGTTATCGATCCATCAGGCAATAAGATGCACATCATCCATGGCAAGCTCAGAAGCCTTAAGAGGTACTTCGTATCAGACAGATCAACAAAGTCTGAGGAAAGCTTTTGCAAAATCTGGTGAAGTTGATGGAAAAACCTTCATGGACAGTGATACTGGAAGATCTACAGGACTTGGATTCATTACTTCTAGTGCCATCCAGCCCTTGGACGGGCAGGAGCTCCATGGTCGCCAAGTAAGGTTGAATTATTCTACTGATAGGCCTCGAAGTAATTTTGGAAGTTGTTATGGTGGTTACACAGGAGGTGTAGTAGGTTATTCTGGATATGGTTTTGGTGTTGGTTATGGTTTGAGGTGTTATGGAGGTGGAGCAGGTGACAGGTTTGTATCCACTGGTAATAGCAGCAACTATGGTCCTGGTGCTGGTGTTGGTAGTGCAGTCAACTCTACTATTGGTAACTCTACTATTGGTAGTGCTGATAAATTTGGTGTTGGTCAGAGAAACAGCTTTGCCAGTGGAGCTACTGGAAACACTGGGGGTGGATATGAAATTGCCTACACCCGCAGTGGGGCAAGCACAGCTGATGAACATGGCATCCTACCCAATACTCTTCGTCCATTATCCCCCCATCTTCCTGTTTACAAGCCACAAATCAATTCGACATGTTCAATACTTGACAGAATTGCAGCATCTTACCTAACCGCTATAATTTTGCTGTACTATCTTGTTTGTGTGAAAATGGGTTCTATTTGCTTCACCTTCGAGTATTTCTACAAATTCCTCTTTTATTCAGCAAACCTTGTCCCCCTCTCCCTTGAGCTTTCTGCTGTAGCAATGGCCTATCATACGTATTATGGGATCGGTCATCTATTGAACGACTTTAAGGGTTTTAGGTTTCTTAGATTTGGAAAGTAG

Protein Analysis

372

Amino Acids

39.9

Weight (kDa)

9.2

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sdh_cyt PF01127 272 - 364 4.2e-11 Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 406
AccI GTMKAC 1 cut(s) 166
AciI CCGC 3 cut(s) 86, 763, 903
AclWI GGATC 2 cut(s) 205, 1067
AcsI RAATTY 3 cut(s) 4, 683, 977
AfaI GTAC 2 cut(s) 268, 920
AfiI CCNNNNNNNGG 6 cut(s) 406, 410, 411, 623, 768, 769
AflII CTTAAG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 863
AgsI TTSAA 3 cut(s) 445, 870, 1075
AjnI CCWGG 1 cut(s) 616
AloI GAACNNNNNNTCC 2 cut(s) 780, 812
AluBI AGCT 8 cut(s) 158, 249, 305, 421, 708, 722, 782, 1021
AluI AGCT 8 cut(s) 158, 249, 305, 421, 708, 722, 782, 1021
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 2 cut(s) 205, 1067
AoxI GGCC 2 cut(s) 461, 1038
ApeKI GCWGC 2 cut(s) 603, 887
ApoI RAATTY 3 cut(s) 4, 683, 977
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 3 cut(s) 332, 587, 949
AvaII GGWCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 615, 899
BccI CCATC 5 cut(s) 19, 222, 323, 404, 837
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 1 cut(s) 618
BciVI GTATCC 1 cut(s) 598
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 2 cut(s) 366, 1029
BfrI CTTAAG 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 563
BfuI GTATCC 1 cut(s) 598
BglII AGATCT 1 cut(s) 362
BisI GCNGC 3 cut(s) 87, 604, 888
BlsI GCNGC 3 cut(s) 88, 605, 889
Bme1390I CCNGG 1 cut(s) 618
Bme18I GGWCC 1 cut(s) 614
BmgT120I GGNCC 1 cut(s) 614
BmrFI CCNGG 1 cut(s) 618
BmrI ACTGGG 1 cut(s) 744
BmsI GCATC 3 cut(s) 218, 804, 899
BmuI ACTGGG 1 cut(s) 744
BpuEI CTTGAG 3 cut(s) 71, 79, 1037
Bsa29I ATCGAT 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 1050
BsaBI GATNNNNATC 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 240, 405, 424
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 6 cut(s) 406, 410, 411, 623, 768, 769
Bse1I ACTGG 5 cut(s) 361, 598, 714, 730, 739
Bse3DI GCAATG 2 cut(s) 144, 1041
Bse8I GATNNNNATC 1 cut(s) 232
BseBI CCWGG 1 cut(s) 618
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 240, 405, 424
BseGI GGATG 3 cut(s) 236, 396, 795
BseJI GATNNNNATC 1 cut(s) 232
BseLI CCNNNNNNNGG 6 cut(s) 406, 410, 411, 623, 768, 769
BseMI GCAATG 2 cut(s) 144, 1041
BseMII CTCAG 4 cut(s) 184, 192, 264, 287
BseNI ACTGG 5 cut(s) 361, 598, 714, 730, 739
BseXI GCAGC 2 cut(s) 615, 899
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 657
BshFI GGCC 2 cut(s) 463, 1040
BshVI ATCGAT 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 423
BslFI GGGAC 1 cut(s) 989
BslI CCNNNNNNNGG 6 cut(s) 406, 410, 411, 623, 768, 769
BsmFI GGGAC 1 cut(s) 989
BsnI GGCC 2 cut(s) 463, 1040
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 6 cut(s) 24, 192, 210, 283, 362, 1059
Bsp19I CCATGG 2 cut(s) 240, 424
BspACI CCGC 3 cut(s) 86, 763, 903
BspANI GGCC 2 cut(s) 463, 1040
BspCNI CTCAG 4 cut(s) 183, 193, 263, 288
BspDI ATCGAT 1 cut(s) 209
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 2 cut(s) 205, 1067
BspTI CTTAAG 1 cut(s) 259
BsrDI GCAATG 2 cut(s) 144, 1041
BsrI ACTGG 5 cut(s) 361, 598, 714, 730, 739
BssECI CCNNGG 3 cut(s) 240, 405, 424
BssMI GATC 6 cut(s) 24, 192, 210, 283, 362, 1059
BssNAI GTATAC 1 cut(s) 167
BssT1I CCWWGG 3 cut(s) 240, 405, 424
Bst1107I GTATAC 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 2 cut(s) 103, 816
BstAFI CTTAAG 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 1050
BstC8I GCNNGC 3 cut(s) 84, 247, 775
BstDEI CTNAG 6 cut(s) 149, 170, 201, 250, 296, 1100
BstDSI CCRYGG 2 cut(s) 240, 424
BstF5I GGATG 3 cut(s) 236, 396, 795
BstKTI GATC 6 cut(s) 27, 195, 213, 286, 365, 1062
BstMBI GATC 6 cut(s) 24, 192, 210, 283, 362, 1059
BstMWI GCNNNNNNNGC 3 cut(s) 128, 719, 779
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 1 cut(s) 867
BstSCI CCNGG 1 cut(s) 616
BstSFI CTRYAG 2 cut(s) 366, 1029
BstSNI TACGTA 1 cut(s) 1050
BstV1I GCAGC 2 cut(s) 615, 899
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BstZ17I GTATAC 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 209
BsuI GTATCC 1 cut(s) 598
BsuRI GGCC 2 cut(s) 463, 1040
BsuTUI ATCGAT 1 cut(s) 209
BtgI CCRYGG 2 cut(s) 240, 424
BtsCI GGATG 3 cut(s) 236, 396, 795
BtsI GCAGTG 1 cut(s) 772
BtsIMutI CAGTG 5 cut(s) 355, 591, 721, 732, 772
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 3 cut(s) 84, 247, 775
Cfr13I GGNCC 1 cut(s) 614
ClaI ATCGAT 1 cut(s) 209
Csp6I GTAC 2 cut(s) 267, 919
CviAII CATG 6 cut(s) 18, 241, 343, 425, 791, 864
CviQI GTAC 2 cut(s) 267, 919
DdeI CTNAG 6 cut(s) 149, 170, 201, 250, 296, 1100
DpnI GATC 6 cut(s) 26, 194, 212, 285, 364, 1061
DpnII GATC 6 cut(s) 24, 192, 210, 283, 362, 1059
Eam1104I CTCTTC 2 cut(s) 103, 816
EarI CTCTTC 2 cut(s) 103, 816
Ecl136II GAGCTC 1 cut(s) 421
Eco105I TACGTA 1 cut(s) 1050
Eco130I CCWWGG 3 cut(s) 240, 405, 424
Eco147I AGGCCT 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 3 cut(s) 240, 405, 424
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 3 cut(s) 240, 405, 424
FaeI CATG 6 cut(s) 21, 244, 346, 428, 794, 867
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FaqI GGGAC 1 cut(s) 989
FatI CATG 6 cut(s) 17, 240, 342, 424, 790, 863
FauI CCCGC 1 cut(s) 770
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 3 cut(s) 87, 604, 888
FokI GGATG 3 cut(s) 223, 383, 782
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 3 cut(s) 87, 604, 888
FspBI CTAG 1 cut(s) 390
GluI GCNGC 3 cut(s) 87, 604, 888
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 463, 1040
Hin1II CATG 6 cut(s) 21, 244, 346, 428, 794, 867
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 2 cut(s) 115, 378
HphI GGTGA 3 cut(s) 332, 587, 949
Hpy166II GTNNAC 3 cut(s) 167, 643, 841
Hpy188I TCNGA 5 cut(s) 202, 253, 279, 297, 699
Hpy188III TCNNGA 2 cut(s) 40, 522
Hpy8I GTNNAC 3 cut(s) 167, 643, 841
HpyAV CCTTC 2 cut(s) 349, 970
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 1049
HpyCH4V TGCA 7 cut(s) 100, 137, 182, 231, 311, 638, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 719, 779
HpyF3I CTNAG 6 cut(s) 149, 170, 201, 250, 296, 1100
HpySE526I ACGT 1 cut(s) 1049
Hsp92II CATG 6 cut(s) 21, 244, 346, 428, 794, 867
Kzo9I GATC 6 cut(s) 24, 192, 210, 283, 362, 1059
LmnI GCTCC 4 cut(s) 418, 426, 569, 719
Lsp1109I GCAGC 2 cut(s) 615, 899
LweI GCATC 3 cut(s) 218, 804, 899
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 1049
MaeIII GTNAC 3 cut(s) 494, 575, 656
MalI GATC 6 cut(s) 26, 194, 212, 285, 364, 1061
MboI GATC 6 cut(s) 24, 192, 210, 283, 362, 1059
MboII GAAGA 5 cut(s) 6, 120, 372, 803, 824
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 9 cut(s) 4, 445, 472, 683, 750, 856, 882, 909, 977
MlyI GAGTC 1 cut(s) 124
MseI TTAA 2 cut(s) 260, 1083
MslI CAYNNNNRTG 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 782
MspCI CTTAAG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 618
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 3 cut(s) 128, 719, 779
NcoI CCATGG 2 cut(s) 240, 424
NdeII GATC 6 cut(s) 24, 192, 210, 283, 362, 1059
NlaIII CATG 6 cut(s) 21, 244, 346, 428, 794, 867
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 1 cut(s) 867
PaqCI CACCTGC 1 cut(s) 563
PceI AGGCCT 1 cut(s) 463
PciI ACATGT 1 cut(s) 863
PfeI GAWTC 1 cut(s) 378
PflMI CCANNNNNTGG 1 cut(s) 406
PkrI GCNGC 3 cut(s) 88, 605, 889
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Ppu21I YACGTR 1 cut(s) 1050
PscI ACATGT 1 cut(s) 863
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 616
PspPI GGNCC 1 cut(s) 614
PsuI RGATCY 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 782
RsaI GTAC 2 cut(s) 268, 920
RsaNI GTAC 2 cut(s) 267, 919
RseI CAYNNNNRTG 1 cut(s) 16
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 260, 1083
SatI GCNGC 3 cut(s) 87, 604, 888
Sau3AI GATC 6 cut(s) 24, 192, 210, 283, 362, 1059
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 618
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 3 cut(s) 218, 804, 899
SfcI CTRYAG 2 cut(s) 366, 1029
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 4 cut(s) 50, 58, 259, 1016
SmoI CTYRAG 4 cut(s) 50, 58, 259, 1016
SnaBI TACGTA 1 cut(s) 1050
Sse9I AATT 9 cut(s) 4, 445, 472, 683, 750, 856, 882, 909, 977
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 3 cut(s) 86, 763, 903
SspI AATATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 423
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 1 cut(s) 616
StyI CCWWGG 3 cut(s) 240, 405, 424
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 1052
TaqI TCGA 5 cut(s) 118, 209, 466, 860, 963
TaqII GACCGA 2 cut(s) 59, 1052
TasI AATT 9 cut(s) 4, 445, 472, 683, 750, 856, 882, 909, 977
TatI WGTACW 1 cut(s) 918
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 2 cut(s) 260, 1083
Tru9I TTAA 2 cut(s) 260, 1083
TscAI CASTG 5 cut(s) 355, 598, 721, 739, 772
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 2 cut(s) 603, 887
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 6 cut(s) 6, 17, 331, 370, 762, 801
TspRI CASTG 5 cut(s) 355, 598, 721, 739, 772
Van91I CCANNNNNTGG 1 cut(s) 406
Vha464I CTTAAG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 3 cut(s) 4, 683, 977
XceI RCATGY 1 cut(s) 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 166
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.