FvH4_2g07100

Pollen-specific leucine-rich repeat extensin-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
5874951 .. 5876579
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07100.t1

Sequence Viewer

Length: 1629 bp
ATGGCAACTATTCTCACACACAAAGCTTTCGGCTTCACTCTCTTGATCTTCTCCATTTGCCTTTCTTCTTTCTCAACCCTCACCTCTGCCTTGACCAATGCCGAAGCCGCATACATAGCGAAACGCCAGCTCTTGACACTCCCTGAAAATGGTGATCTACCAGATAACTACGAAATCACAGTCGACCCGAAGCTCACATTTGCCAATGACAGGCTCAAGTCAGCCTACGTTGGCCTCCATGCATTGAAAGACGTCATCTACTCCGACCCGACTAACTTCACGGCAAACTGGGAAGGACCTGATGTGTGTAAGTACAATGGGGTTGTATGCTCTCCGGCACTTGACAATCCCAAAGTGGACGTTGTGGCTGGTCTGGACCTCAACCATGCAGACATCGCAGCTCACTTTCCAGTCGAATTTGGGCTTCTGACTGATCTGGCTATGATCCACCTTAACTCTAACAGGTTATGTGGAATTGTGCCCAAGGTCTTCAGGAGGCTTAAACTCATGTTCGAGTTCGACATCAGCAACAACCGATTCGTTGGCCAGTTTCCGACGGTCGTTCTAGAATGGCCGGAGATTAAGTACCTTGATCTCAGATTCAACGAATTCGAAGGGGAGTTGCCTCCGAGTCTGTTTTTGAGTTCGTTGGATGCCATTTTCTTGAACAACAACAAGTTCAACTCAACAATCCCAGACACAATAGGAAACTCTACGGTTTCGGTTGTGACTTTTGCGTTCAACCAGTTCAGTGGGTGCTTACCTAGCGGCATCGGGAATATGTGTACTGTGGAGGAGTTGCTGTTCATGAACAACAACATGAGTGGGTGCTTTCCTAACGAGATTGGGAATCTAAAGAATGTGACGGTTCTGGACGTGAGCAATAACGGGTTGGTAGGGCCGTTGCCGGATAGTCTTTCTGAGCTGAAGACCATTGAGGTTTTGGATGTTGGGTACAATCAGTTGATAGGGCTCGTGCCGGAGAAGATATGCAGCTTGCCCAAGTTGGAAAATTTTACGCTTGCTTATAACTATTTCAGTGGGGAGGATCAGAAATGTGTGCCTAATCCATACGAACAATTGACATCGAACGATGAAGGTAACTGTTTTCCTGGCAGACCGAATCAGAAGAATACAGAGACTTGTAACCCTGTGGTGACCAGGGTTATTGATTGTAAATACAGTTGTCCCGGCCCTAAACCTGTGACTCCAAAGCCCGAACTGCCTCCTACTCCAAAGGTTGAGCCACCACCGGTTCACTGGCCGCCACCACCAGTTTACTCGCCGCCACCGCCACCGGTTCACTCTCCACCACCTCCAGTGCACTCTCCACCACCACCAGTTCACTCCCCTCCAGCACCCGTTCACACGCCACCGCCACCACCACCAGTGTACTCTCCACCACCGCCAGTTCACTCCCCACCACCACCGGATCACTCTCCACCACCACCAGTCCATTCTCCCCCACCTCCGATTTACTCCTCTGAGTCCTCTCCACCACCAGTTCACTCACCCCCACCTTTCCAGTCCCCACCTCCTCCAACTTCACCACCATTCCTCCTCCCACCAAAGATTGGCGCACAGTACATGTCACCACCACCACCAATTTCGCAGGACATTAAGTTTTAG

Protein Analysis

543

Amino Acids

59.07

Weight (kDa)

5.23

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 194 - 343 4.3e-06 Leucine-rich repeat region
LRR_8 PF13855 287 - 345 2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1029
AatII GACGTC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 1574
AccI GTMKAC 1 cut(s) 183
AciI CCGC 7 cut(s) 108, 768, 1265, 1286, 1292, 1376, 1406
AclWI GGATC 3 cut(s) 439, 1056, 1440
AcoI YGGCCR 3 cut(s) 544, 572, 1262
AcsI RAATTY 3 cut(s) 416, 608, 1012
AcuI CTGAAG 2 cut(s) 475, 947
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 6 cut(s) 314, 587, 787, 956, 1394, 1586
AfiI CCNNNNNNNGG 3 cut(s) 149, 210, 1574
AflIII ACRYGT 1 cut(s) 1587
AgeI ACCGGT 2 cut(s) 1252, 1297
AgsI TTSAA 5 cut(s) 247, 604, 667, 682, 742
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 2 cut(s) 1111, 1160
AloI GAACNNNNNNTCC 2 cut(s) 788, 820
AluBI AGCT 6 cut(s) 26, 130, 193, 401, 925, 996
AluI AGCT 6 cut(s) 26, 130, 193, 401, 925, 996
Alw21I GWGCWC 1 cut(s) 1326
Alw26I GTCTC 1 cut(s) 1133
Alw44I GTGCAC 1 cut(s) 1322
AlwI GGATC 3 cut(s) 439, 1056, 1440
AoxI GGCC 6 cut(s) 232, 544, 572, 899, 1192, 1262
ApaLI GTGCAC 1 cut(s) 1322
ApeKI GCWGC 2 cut(s) 398, 993
ApoI RAATTY 3 cut(s) 416, 608, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AsiGI ACCGGT 2 cut(s) 1252, 1297
AspLEI GCGC 1 cut(s) 1580
AspS9I GGNCC 4 cut(s) 296, 376, 899, 1193
AsuC2I CCSGG 1 cut(s) 1191
AsuHPI GGTGA 6 cut(s) 73, 164, 1168, 1503, 1539, 1584
AsuII TTCGAA 1 cut(s) 612
AvaII GGWCC 2 cut(s) 296, 376
BaeGI GKGCMC 2 cut(s) 483, 1326
BalI TGGCCA 1 cut(s) 546
BanII GRGCYC 1 cut(s) 975
BauI CACGAG 1 cut(s) 974
BbsI GAAGAC 2 cut(s) 481, 935
Bbv12I GWGCWC 1 cut(s) 1326
BbvI GCAGC 2 cut(s) 410, 1005
BceAI ACGGC 2 cut(s) 297, 886
BciT130I CCWGG 2 cut(s) 1113, 1162
BcnI CCSGG 1 cut(s) 1191
BcoDI GTCTC 1 cut(s) 1133
BfaI CTAG 2 cut(s) 566, 765
BisI GCNGC 6 cut(s) 108, 399, 769, 994, 1265, 1286
BlsI GCNGC 6 cut(s) 109, 400, 770, 995, 1266, 1287
Bme1390I CCNGG 3 cut(s) 1113, 1162, 1191
Bme18I GGWCC 2 cut(s) 296, 376
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 4 cut(s) 296, 376, 899, 1193
BmrFI CCNGG 3 cut(s) 1113, 1162, 1191
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 2 cut(s) 643, 780
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 2 cut(s) 481, 935
BpmI CTGGAG 2 cut(s) 1302, 1338
Bpu14I TTCGAA 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 1191
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 483, 1161
BsaWI WCCGGW 3 cut(s) 1252, 1297, 1429
BsaXI ACNNNNNCTCC 6 cut(s) 569, 599, 788, 818, 1542, 1572
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 210, 1574
Bse118I RCCGGY 2 cut(s) 1252, 1297
BseBI CCWGG 2 cut(s) 1113, 1162
BseDI CCNNGG 2 cut(s) 483, 1161
BseGI GGATG 2 cut(s) 658, 952
BseLI CCNNNNNNNGG 3 cut(s) 149, 210, 1574
BseMII CTCAG 3 cut(s) 610, 912, 1476
BseRI GAGGAG 4 cut(s) 809, 1471, 1527, 1550
BseSI GKGCMC 2 cut(s) 483, 1326
BseXI GCAGC 2 cut(s) 410, 1005
Bsh1285I CGRYCG 1 cut(s) 561
BshFI GGCC 6 cut(s) 234, 546, 574, 901, 1194, 1264
BshTI ACCGGT 2 cut(s) 1252, 1297
BsiEI CGRYCG 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 1326
BsiSI CCGG 8 cut(s) 335, 575, 908, 980, 1191, 1253, 1298, 1430
BslFI GGGAC 2 cut(s) 1173, 1513
BslI CCNNNNNNNGG 3 cut(s) 149, 210, 1574
BsmAI GTCTC 1 cut(s) 1133
BsmFI GGGAC 2 cut(s) 1173, 1513
BsnI GGCC 6 cut(s) 234, 546, 574, 901, 1194, 1264
Bsp119I TTCGAA 1 cut(s) 612
Bsp1286I GDGCHC 3 cut(s) 483, 975, 1326
Bsp143I GATC 7 cut(s) 45, 154, 433, 444, 592, 1048, 1432
BspACI CCGC 7 cut(s) 108, 768, 1265, 1286, 1292, 1376, 1406
BspANI GGCC 6 cut(s) 234, 546, 574, 901, 1194, 1264
BspCNI CTCAG 3 cut(s) 609, 913, 1477
BspHI TCATGA 1 cut(s) 807
BspPI GGATC 3 cut(s) 439, 1056, 1440
BspT104I TTCGAA 1 cut(s) 612
BsrFI RCCGGY 2 cut(s) 1252, 1297
BssAI RCCGGY 2 cut(s) 1252, 1297
BssECI CCNNGG 2 cut(s) 483, 1161
BssMI GATC 7 cut(s) 45, 154, 433, 444, 592, 1048, 1432
BssNI GRCGYC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 974
BssT1I CCWWGG 1 cut(s) 483
Bst2BI CACGAG 1 cut(s) 974
Bst2UI CCWGG 2 cut(s) 1113, 1162
Bst4CI ACNGT 8 cut(s) 181, 559, 718, 790, 868, 1106, 1184, 1584
BstACI GRCGYC 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 612
BstC8I GCNNGC 3 cut(s) 128, 998, 1023
BstDEI CTNAG 3 cut(s) 596, 921, 1485
BstEII GGTNACC 1 cut(s) 1156
BstF5I GGATG 2 cut(s) 658, 952
BstHHI GCGC 1 cut(s) 1580
BstKTI GATC 7 cut(s) 48, 157, 436, 447, 595, 1051, 1435
BstMAI GTCTC 1 cut(s) 1133
BstMBI GATC 7 cut(s) 45, 154, 433, 444, 592, 1048, 1432
BstMCI CGRYCG 1 cut(s) 561
BstMWI GCNNNNNNNGC 6 cut(s) 107, 116, 395, 765, 1222, 1291
BstNI CCWGG 2 cut(s) 1113, 1162
BstNSI RCATGY 1 cut(s) 1591
BstPI GGTNACC 1 cut(s) 1156
BstSCI CCNGG 3 cut(s) 1111, 1160, 1189
BstSLI GKGCMC 2 cut(s) 483, 1326
BstV1I GCAGC 2 cut(s) 410, 1005
BstV2I GAAGAC 2 cut(s) 481, 935
BstXI CCANNNNNNTGG 1 cut(s) 752
BsuRI GGCC 6 cut(s) 234, 546, 574, 901, 1194, 1264
BtgZI GCGATG 1 cut(s) 379
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 2 cut(s) 658, 952
BtsIMutI CAGTG 5 cut(s) 757, 1045, 1258, 1326, 1395
Cac8I GCNNGC 3 cut(s) 128, 998, 1023
CciI TCATGA 1 cut(s) 807
CfoI GCGC 1 cut(s) 1580
Cfr10I RCCGGY 2 cut(s) 1252, 1297
Cfr13I GGNCC 4 cut(s) 296, 376, 899, 1193
Csp6I GTAC 6 cut(s) 313, 586, 786, 955, 1393, 1585
CspAI ACCGGT 2 cut(s) 1252, 1297
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 6 cut(s) 239, 386, 508, 808, 820, 1588
CviQI GTAC 6 cut(s) 313, 586, 786, 955, 1393, 1585
DdeI CTNAG 3 cut(s) 596, 921, 1485
DpnI GATC 7 cut(s) 47, 156, 435, 446, 594, 1050, 1434
DpnII GATC 7 cut(s) 45, 154, 433, 444, 592, 1048, 1432
EaeI YGGCCR 3 cut(s) 544, 572, 1262
Eco130I CCWWGG 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 975
Eco47I GGWCC 2 cut(s) 296, 376
Eco57I CTGAAG 2 cut(s) 475, 947
Eco91I GGTNACC 1 cut(s) 1156
EcoO109I RGGNCCY 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 1156
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 2 cut(s) 1111, 1160
EcoT14I CCWWGG 1 cut(s) 483
EcoT22I ATGCAT 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 975
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 6 cut(s) 242, 389, 511, 811, 823, 1591
FaqI GGGAC 2 cut(s) 1173, 1513
FatI CATG 6 cut(s) 238, 385, 507, 807, 819, 1587
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 6 cut(s) 108, 399, 769, 994, 1265, 1286
FokI GGATG 2 cut(s) 665, 959
FriOI GRGCYC 1 cut(s) 975
Fsp4HI GCNGC 6 cut(s) 108, 399, 769, 994, 1265, 1286
FspBI CTAG 2 cut(s) 566, 765
GlaI GCGC 1 cut(s) 1579
GluI GCNGC 6 cut(s) 108, 399, 769, 994, 1265, 1286
GsuI CTGGAG 2 cut(s) 1302, 1338
HaeIII GGCC 6 cut(s) 234, 546, 574, 901, 1194, 1264
HapII CCGG 8 cut(s) 335, 575, 908, 980, 1191, 1253, 1298, 1430
HhaI GCGC 1 cut(s) 1580
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 6 cut(s) 242, 389, 511, 811, 823, 1591
Hin6I GCGC 1 cut(s) 1578
HinP1I GCGC 1 cut(s) 1578
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 7 cut(s) 537, 600, 631, 850, 1123, 1207, 1487
HpaII CCGG 8 cut(s) 335, 575, 908, 980, 1191, 1253, 1298, 1430
HphI GGTGA 6 cut(s) 73, 164, 1168, 1503, 1539, 1584
Hpy188III TCNNGA 9 cut(s) 43, 133, 374, 493, 566, 664, 775, 808, 872
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 3 cut(s) 287, 608, 1091
HpyCH4III ACNGT 8 cut(s) 181, 559, 718, 790, 868, 1106, 1184, 1584
HpyCH4IV ACGT 4 cut(s) 228, 252, 360, 876
HpyCH4V TGCA 4 cut(s) 242, 389, 993, 1324
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 116, 395, 765, 1222, 1291
HpyF3I CTNAG 3 cut(s) 596, 921, 1485
HpySE526I ACGT 4 cut(s) 228, 252, 360, 876
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 6 cut(s) 242, 389, 511, 811, 823, 1591
HspAI GCGC 1 cut(s) 1578
Kzo9I GATC 7 cut(s) 45, 154, 433, 444, 592, 1048, 1432
Lsp1109I GCAGC 2 cut(s) 410, 1005
LweI GCATC 2 cut(s) 643, 780
MaeI CTAG 2 cut(s) 566, 765
MaeII ACGT 4 cut(s) 228, 252, 360, 876
MaeIII GTNAC 7 cut(s) 727, 862, 1100, 1145, 1156, 1204, 1590
MalI GATC 7 cut(s) 47, 156, 435, 446, 594, 1050, 1434
MboI GATC 7 cut(s) 45, 154, 433, 444, 592, 1048, 1432
MboII GAAGA 6 cut(s) 40, 57, 481, 940, 997, 1141
MfeI CAATTG 1 cut(s) 1079
MhlI GDGCHC 3 cut(s) 483, 975, 1326
MlsI TGGCCA 1 cut(s) 546
MluCI AATT 6 cut(s) 416, 474, 608, 1012, 1079, 1605
MluNI TGGCCA 1 cut(s) 546
MlyI GAGTC 3 cut(s) 640, 1201, 1496
MmeI TCCRAC 5 cut(s) 288, 578, 630, 987, 1565
Mox20I TGGCCA 1 cut(s) 546
Mph1103I ATGCAT 1 cut(s) 244
MscI TGGCCA 1 cut(s) 546
MseI TTAA 4 cut(s) 453, 501, 582, 1620
Msp20I TGGCCA 1 cut(s) 546
MspI CCGG 8 cut(s) 335, 575, 908, 980, 1191, 1253, 1298, 1430
MspR9I CCNGG 3 cut(s) 1113, 1162, 1191
MunI CAATTG 1 cut(s) 1079
MvaI CCWGG 2 cut(s) 1113, 1162
MwoI GCNNNNNNNGC 6 cut(s) 107, 116, 395, 765, 1222, 1291
NciI CCSGG 1 cut(s) 1191
NdeII GATC 7 cut(s) 45, 154, 433, 444, 592, 1048, 1432
NlaIII CATG 6 cut(s) 242, 389, 511, 811, 823, 1591
NmuCI GTSAC 5 cut(s) 727, 862, 1156, 1204, 1590
NsiI ATGCAT 1 cut(s) 244
NspI RCATGY 1 cut(s) 1591
NspV TTCGAA 1 cut(s) 612
PagI TCATGA 1 cut(s) 807
PciI ACATGT 1 cut(s) 1587
PfeI GAWTC 4 cut(s) 537, 600, 850, 1123
PflMI CCANNNNNTGG 1 cut(s) 1574
PinAI ACCGGT 2 cut(s) 1252, 1297
PkrI GCNGC 6 cut(s) 109, 400, 770, 995, 1266, 1287
PleI GAGTC 3 cut(s) 639, 1201, 1495
PpsI GAGTC 3 cut(s) 639, 1201, 1495
PpuMI RGGWCCY 1 cut(s) 296
PscI ACATGT 1 cut(s) 1587
PsiI TTATAA 1 cut(s) 1029
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 1111, 1160
PspEI GGTNACC 1 cut(s) 1156
PspGI CCWGG 2 cut(s) 1111, 1160
PspPI GGNCC 4 cut(s) 296, 376, 899, 1193
PspPPI RGGWCCY 1 cut(s) 296
RsaI GTAC 6 cut(s) 314, 587, 787, 956, 1394, 1586
RsaNI GTAC 6 cut(s) 313, 586, 786, 955, 1393, 1585
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 4 cut(s) 453, 501, 582, 1620
SatI GCNGC 6 cut(s) 108, 399, 769, 994, 1265, 1286
Sau3AI GATC 7 cut(s) 45, 154, 433, 444, 592, 1048, 1432
Sau96I GGNCC 4 cut(s) 296, 376, 899, 1193
SchI GAGTC 3 cut(s) 640, 1201, 1496
ScrFI CCNGG 3 cut(s) 1113, 1162, 1191
SduI GDGCHC 3 cut(s) 483, 975, 1326
SfaNI GCATC 2 cut(s) 643, 780
SfuI TTCGAA 1 cut(s) 612
SinI GGWCC 2 cut(s) 296, 376
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 6 cut(s) 416, 474, 608, 1012, 1079, 1605
SsiI CCGC 7 cut(s) 108, 768, 1265, 1286, 1292, 1376, 1406
SspMI CTAG 2 cut(s) 566, 765
StyD4I CCNGG 3 cut(s) 1111, 1160, 1189
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 8 cut(s) 181, 559, 718, 790, 868, 1106, 1184, 1584
TaiI ACGT 4 cut(s) 231, 255, 363, 879
TaqI TCGA 6 cut(s) 183, 414, 513, 519, 612, 1088
TaqII GACCGA 1 cut(s) 1135
TasI AATT 6 cut(s) 416, 474, 608, 1012, 1079, 1605
TatI WGTACW 4 cut(s) 312, 785, 1392, 1584
TauI GCSGC 4 cut(s) 110, 771, 1267, 1288
TfiI GAWTC 4 cut(s) 537, 600, 850, 1123
Tru1I TTAA 4 cut(s) 453, 501, 582, 1620
Tru9I TTAA 4 cut(s) 453, 501, 582, 1620
TscAI CASTG 5 cut(s) 757, 1045, 1265, 1326, 1395
TseFI GTSAC 5 cut(s) 727, 862, 1156, 1204, 1590
TseI GCWGC 2 cut(s) 398, 993
Tsp45I GTSAC 5 cut(s) 727, 862, 1156, 1204, 1590
TspDTI ATGAA 3 cut(s) 796, 824, 1110
TspRI CASTG 5 cut(s) 757, 1045, 1265, 1326, 1395
Van91I CCANNNNNTGG 1 cut(s) 1574
VneI GTGCAC 1 cut(s) 1322
VpaK11BI GGWCC 2 cut(s) 296, 376
XapI RAATTY 3 cut(s) 416, 608, 1012
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 1 cut(s) 1591
XcmI CCANNNNNNNNNTGG 2 cut(s) 940, 1257
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 2 cut(s) 566, 765
ZraI GACGTC 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.