Prupe.8G113900_v2.0.a1

Pollen-specific leucine-rich repeat extensin-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
14205769 .. 14207916
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G113900.1

Sequence Viewer

Length: 1848 bp
ATGGCTCCATCTCTCATCACAAACAAGCCCTCAGGCGGCTGCCTTCTCTTCTTCCTCCTATTCTCTTCATTCTCAGCCCTCTCGTTCGCCTTAACCGATGCTGAAGTCGCCTTCATAGCTCACCGCCAGCTCCTGGCTCTCCCGGAGGGCGGTGACCTTCCTGAAAACTATGTGGTTCAAGTGGATGCCAAGCTCAACTTTGAAAACGACAGGCTCAAAAACGCTTATGTTGCTCTTCAGGCCTTGAAGAAGGCCATCTTCTCCGACCCTTTTGGCTTCACAGTCAATTGGGAAGGTGAAGATGTTTGCTCCTACAAAGGGGTCTTCTGTGCACCGGCGCTTGACAATGAAAAACTGACCGTTGTGGCCGGTTTGGACCTGAACCATGCCGACATTGCTGGCCATCTCCCTGTCGAAATGGGGCTCTTGACTGATGCTGCTCTCATCCACCTCAACTCCAACAGGTTCTGCGGCATTATCCCACGGAGCTTCAGGAGACTGATACTTATGCATGAGTTTGATGTCAGCAACAACCGCTTCGTCGGCTCCTTCCCTGTGGTGGTCCTCGAATGGCCTAGTTGCAAGTACCTTGATCTCCGGTACAACGATTTCGAAGGGGAGCTGCCTCCAGAGCTTTTCCACAAGGAGCACGACGCCTTGTTCTTGAACCACAACCGATTCACATCAATAATTCCAGACACCTTGGGGCACTCCACGGTTTCTGTAGTGAATTTTGGGTTCAACAACTTCACTGGTTGCATACCACGAAGCGTTGGTAACATGAAAAATCTGAATGAGATTATTTTCATGAACAACCAACTTGGTGGCTGCTTCCCTCCTGAGATTGGAAACCTTGGAAATCTGCAGGTTCTTGATGTGAGCAACAATGTGTTTATTGGTTCCTTCCCAAAGACCTTCTTGGAGCTCCGCAGCATAGAGGAATTGGCTGTTGGGTACAACAGGTTGACAGGGTTTGTGACTGAAAAGATTTGCTCCTTGCCTAAGTTGGCCAATTTCACATTTGCTTACAATTATTTCAGTGGAGAAGCTCAGAAATGTATGCCAAATCCCAAACTTGAGGTGAACTTTGATGACACGGGCAACTGCATGCCCGGCAGGCCCAAGCAAAAGAATACCAAGACTTGCTTCCCTGTGGTTACTAAGCCAGTGGATTGCAGCAAGCATTGTGGTGGTGGTTCTTCAACCCCGGATAAGCCAAAGACACCAAGGCCTCAACCACCTCAGACACCAAAGACTGAGAAGCCTCCAACCCCCAAGGCTGAGCCACCACCGACACCAAAGGCGGAGCCACCTCCCACGCCTAAAGCCAAGCCACCTCCCACGCCAAAGGCCGAGCCACCACCCACTCCAAAGGCTGAACCACCACCCACTCCAAAGGCCGAGCCACCACCCACACCCAAGGCCGAGCCACCACCCACTCCCAAGGCCGAGCCACCACCCACACCTAAGGCCGAGCCACCACCCACACCCAAGGCCGAGCCACCACCAACACCCAAGGCCGAGCCACCCGAAACACCCGAGGCCGAGCCACCCCAAACACCTGAGGCCGAGCCACCTCAAACACCAGAAGTCGAGCCACCTCCCACACCAAAGGCTGAGCCACCACCGACACCGAAGGCCGAGCCACCTCCCACACCAAAGGCCGAGCCACCACCGACACCAAAGTCCGAGCCACCACCGACACCTAAGGCCGAGCCACCTCCCACACCAAAGGCCGAGCCACCACCGACACCAAAGTCCGAGCCACCACCGACACCCAAGGCCGAGCCACCGCCCACACCCAAGGCCGAGCCACCACCCACACCCAAGGCCGAGCCACCACCAACA

Protein Analysis

616

Amino Acids

66.71

Weight (kDa)

5.67

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1684, 1756
Acc36I ACCTGC 1 cut(s) 856
AccB7I CCANNNNNTGG 1 cut(s) 133
AciI CCGC 8 cut(s) 36, 124, 150, 471, 535, 928, 1304, 1793
AcoI YGGCCR 3 cut(s) 366, 400, 1008
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 3 cut(s) 123, 221, 475
AcyI GRCGYC 1 cut(s) 654
AfaI GTAC 3 cut(s) 587, 602, 956
AfiI CCNNNNNNNGG 6 cut(s) 35, 133, 149, 318, 559, 845
AgsI TTSAA 6 cut(s) 179, 203, 247, 667, 742, 1203
AjnI CCWGG 1 cut(s) 132
AjuI GAANNNNNNNTTGG 4 cut(s) 933, 965, 1130, 1162
AluBI AGCT 8 cut(s) 119, 130, 193, 489, 622, 634, 925, 1049
AluI AGCT 8 cut(s) 119, 130, 193, 489, 622, 634, 925, 1049
Alw21I GWGCWC 3 cut(s) 334, 651, 927
Alw26I GTCTC 1 cut(s) 490
Alw44I GTGCAC 1 cut(s) 330
AlwNI CAGNNNCTG 2 cut(s) 133, 468
Ama87I CYCGRG 1 cut(s) 1538
ApaLI GTGCAC 1 cut(s) 330
ApeKI GCWGC 6 cut(s) 39, 437, 622, 828, 930, 1176
ApoI RAATTY 1 cut(s) 730
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 3 cut(s) 376, 562, 1119
AsuC2I CCSGG 3 cut(s) 143, 1113, 1208
AsuHPI GGTGA 4 cut(s) 113, 164, 308, 1093
AsuII TTCGAA 1 cut(s) 612
AvaI CYCGRG 1 cut(s) 1538
AvaII GGWCC 2 cut(s) 376, 562
AxyI CCTNAGG 4 cut(s) 31, 1467, 1563, 1707
BaeGI GKGCMC 2 cut(s) 334, 711
BalI TGGCCA 2 cut(s) 402, 1010
BanII GRGCYC 2 cut(s) 426, 927
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 3 cut(s) 334, 651, 927
BbvI GCAGC 6 cut(s) 26, 424, 609, 815, 942, 1188
BccI CCATC 3 cut(s) 16, 263, 411
BciT130I CCWGG 1 cut(s) 134
BcnI CCSGG 3 cut(s) 143, 1113, 1208
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 2 cut(s) 723, 863
BfoI RGCGCY 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 856
BglI GCCNNNNNGGC 1 cut(s) 1117
BisI GCNGC 8 cut(s) 37, 40, 438, 472, 623, 829, 931, 1177
BlpI GCTNAGC 2 cut(s) 1281, 1617
BlsI GCNGC 8 cut(s) 38, 41, 439, 473, 624, 830, 932, 1178
Bme1390I CCNGG 4 cut(s) 134, 143, 1113, 1208
Bme18I GGWCC 2 cut(s) 376, 562
BmeT110I CYCGRG 1 cut(s) 1538
BmgT120I GGNCC 3 cut(s) 376, 562, 1119
BmiI GGNNCC 4 cut(s) 6, 547, 901, 1308
BmrFI CCNGG 4 cut(s) 134, 143, 1113, 1208
BmsI GCATC 3 cut(s) 88, 175, 424
BpiI GAAGAC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 612
Bpu1102I GCTNAGC 2 cut(s) 1281, 1617
Bpu14I TTCGAA 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 1097
BpuMI CCSGG 3 cut(s) 143, 1113, 1208
BsaBI GATNNNNATC 1 cut(s) 682
BsaHI GRCGYC 1 cut(s) 654
BsaWI WCCGGW 1 cut(s) 597
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 6 cut(s) 35, 133, 149, 318, 559, 845
Bse118I RCCGGY 2 cut(s) 334, 368
Bse1I ACTGG 2 cut(s) 757, 1166
Bse21I CCTNAGG 4 cut(s) 31, 1467, 1563, 1707
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 682
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 2 cut(s) 190, 444
BseJI GATNNNNATC 1 cut(s) 682
BseLI CCNNNNNNNGG 6 cut(s) 35, 133, 149, 318, 559, 845
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 9 cut(s) 45, 87, 831, 1064, 1248, 1256, 1272, 1554, 1608
BseNI ACTGG 2 cut(s) 757, 1166
BseSI GKGCMC 2 cut(s) 334, 711
BseXI GCAGC 6 cut(s) 26, 424, 609, 815, 942, 1188
BsiHKAI GWGCWC 3 cut(s) 334, 651, 927
BsiHKCI CYCGRG 1 cut(s) 1538
BsiSI CCGG 6 cut(s) 143, 335, 369, 598, 1113, 1208
BslI CCNNNNNNNGG 6 cut(s) 35, 133, 149, 318, 559, 845
BsmAI GTCTC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 1538
Bsp119I TTCGAA 1 cut(s) 612
Bsp1286I GDGCHC 5 cut(s) 334, 426, 651, 711, 927
Bsp143I GATC 1 cut(s) 592
Bsp1720I GCTNAGC 2 cut(s) 1281, 1617
BspACI CCGC 8 cut(s) 36, 124, 150, 471, 535, 928, 1304, 1793
BspCNI CTCAG 9 cut(s) 44, 86, 832, 1063, 1249, 1255, 1273, 1555, 1609
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 4 cut(s) 6, 547, 901, 1308
BspMAI CTGCAG 1 cut(s) 867
BspMI ACCTGC 1 cut(s) 856
BspQI GCTCTTC 1 cut(s) 240
BspT104I TTCGAA 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 2 cut(s) 334, 368
BsrI ACTGG 2 cut(s) 757, 1166
BssAI RCCGGY 2 cut(s) 334, 368
BssMI GATC 1 cut(s) 592
BssNI GRCGYC 1 cut(s) 654
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 3 cut(s) 283, 361, 718
Bst6I CTCTTC 3 cut(s) 53, 70, 240
BstACI GRCGYC 1 cut(s) 654
BstBI TTCGAA 1 cut(s) 612
BstC8I GCNNGC 5 cut(s) 128, 400, 1109, 1118, 1181
BstDSI CCRYGG 2 cut(s) 482, 714
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 2 cut(s) 190, 444
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 1 cut(s) 595
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 1 cut(s) 592
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 1111
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 4 cut(s) 132, 141, 1111, 1206
BstSFI CTRYAG 2 cut(s) 723, 863
BstSLI GKGCMC 2 cut(s) 334, 711
BstV1I GCAGC 6 cut(s) 26, 424, 609, 815, 942, 1188
BstV2I GAAGAC 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 824
Bsu36I CCTNAGG 4 cut(s) 31, 1467, 1563, 1707
BtgI CCRYGG 2 cut(s) 482, 714
BtsCI GGATG 2 cut(s) 190, 444
BtsIMutI CAGTG 3 cut(s) 750, 1045, 1173
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 5 cut(s) 128, 400, 1109, 1118, 1181
CaiI CAGNNNCTG 2 cut(s) 133, 468
CciI TCATGA 1 cut(s) 807
CfoI GCGC 1 cut(s) 340
Cfr10I RCCGGY 2 cut(s) 334, 368
Cfr13I GGNCC 3 cut(s) 376, 562, 1119
CseI GACGC 1 cut(s) 662
Csp6I GTAC 3 cut(s) 586, 601, 955
CspCI CAANNNNNGTGG 2 cut(s) 1168, 1203
CviAII CATG 5 cut(s) 386, 512, 781, 808, 1108
CviQI GTAC 3 cut(s) 586, 601, 955
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
DrdI GACNNNNNNGTC 2 cut(s) 1684, 1756
DseDI GACNNNNNNGTC 2 cut(s) 1684, 1756
EaeI YGGCCR 3 cut(s) 366, 400, 1008
Eam1104I CTCTTC 3 cut(s) 53, 70, 240
EarI CTCTTC 3 cut(s) 53, 70, 240
EciI GGCGGA 1 cut(s) 1319
Ecl136II GAGCTC 1 cut(s) 925
Eco147I AGGCCT 2 cut(s) 242, 1231
Eco24I GRGCYC 2 cut(s) 426, 927
Eco47I GGWCC 2 cut(s) 376, 562
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 3 cut(s) 123, 221, 475
Eco81I CCTNAGG 4 cut(s) 31, 1467, 1563, 1707
Eco88I CYCGRG 1 cut(s) 1538
Eco91I GGTNACC 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 925
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 426, 927
FaeI CATG 5 cut(s) 389, 515, 784, 811, 1111
FalI AAGNNNNNCTT 8 cut(s) 182, 214, 242, 274, 902, 934, 1130, 1162
FatI CATG 5 cut(s) 385, 511, 780, 807, 1107
Fnu4HI GCNGC 8 cut(s) 37, 40, 438, 472, 623, 829, 931, 1177
FokI GGATG 2 cut(s) 197, 431
FriOI GRGCYC 2 cut(s) 426, 927
Fsp4HI GCNGC 8 cut(s) 37, 40, 438, 472, 623, 829, 931, 1177
FspBI CTAG 1 cut(s) 576
GlaI GCGC 1 cut(s) 339
GluI GCNGC 8 cut(s) 37, 40, 438, 472, 623, 829, 931, 1177
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 341
HapII CCGG 6 cut(s) 143, 335, 369, 598, 1113, 1208
HgaI GACGC 1 cut(s) 662
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 654
Hin1II CATG 5 cut(s) 389, 515, 784, 811, 1111
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HincII GTYRAC 1 cut(s) 966
HindII GTYRAC 1 cut(s) 966
HinfI GANTC 1 cut(s) 678
HpaII CCGG 6 cut(s) 143, 335, 369, 598, 1113, 1208
HphI GGTGA 4 cut(s) 113, 164, 308, 1093
Hpy166II GTNNAC 3 cut(s) 332, 966, 1084
Hpy188I TCNGA 6 cut(s) 265, 792, 1053, 1245, 1690, 1762
Hpy188III TCNNGA 9 cut(s) 161, 427, 493, 629, 664, 695, 808, 839, 872
Hpy8I GTNNAC 3 cut(s) 332, 966, 1084
Hpy99I CGWCG 2 cut(s) 545, 656
HpyCH4III ACNGT 3 cut(s) 283, 361, 718
HpyCH4V TGCA 7 cut(s) 332, 511, 582, 759, 865, 1107, 1176
Hsp92I GRCGYC 1 cut(s) 654
Hsp92II CATG 5 cut(s) 389, 515, 784, 811, 1111
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 1 cut(s) 592
LguI GCTCTTC 1 cut(s) 240
Lsp1109I GCAGC 6 cut(s) 26, 424, 609, 815, 942, 1188
LweI GCATC 3 cut(s) 88, 175, 424
MaeI CTAG 1 cut(s) 576
MaeIII GTNAC 4 cut(s) 152, 776, 976, 1156
MalI GATC 1 cut(s) 594
MboI GATC 1 cut(s) 592
MboII GAAGA 9 cut(s) 40, 43, 57, 227, 250, 259, 311, 316, 1191
MfeI CAATTG 1 cut(s) 286
MhlI GDGCHC 5 cut(s) 334, 426, 651, 711, 927
MlsI TGGCCA 2 cut(s) 402, 1010
MluCI AATT 6 cut(s) 286, 690, 730, 941, 1012, 1030
MluNI TGGCCA 2 cut(s) 402, 1010
MmeI TCCRAC 3 cut(s) 288, 483, 1292
Mox20I TGGCCA 2 cut(s) 402, 1010
Mph1103I ATGCAT 1 cut(s) 513
MscI TGGCCA 2 cut(s) 402, 1010
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 1188
Msp20I TGGCCA 2 cut(s) 402, 1010
MspI CCGG 6 cut(s) 143, 335, 369, 598, 1113, 1208
MspR9I CCNGG 4 cut(s) 134, 143, 1113, 1208
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 134
NciI CCSGG 3 cut(s) 143, 1113, 1208
NdeII GATC 1 cut(s) 592
NlaIII CATG 5 cut(s) 389, 515, 784, 811, 1111
NlaIV GGNNCC 4 cut(s) 6, 547, 901, 1308
NmuCI GTSAC 2 cut(s) 152, 976
NsiI ATGCAT 1 cut(s) 513
NspI RCATGY 1 cut(s) 1111
NspV TTCGAA 1 cut(s) 612
PaeI GCATGC 1 cut(s) 1111
PagI TCATGA 1 cut(s) 807
PceI AGGCCT 2 cut(s) 242, 1231
PciSI GCTCTTC 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 678
PflMI CCANNNNNTGG 1 cut(s) 133
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 8 cut(s) 38, 41, 439, 473, 624, 830, 932, 1178
Psp124BI GAGCTC 1 cut(s) 927
Psp6I CCWGG 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 4 cut(s) 6, 547, 901, 1308
PspPI GGNCC 3 cut(s) 376, 562, 1119
PstI CTGCAG 1 cut(s) 867
PstNI CAGNNNCTG 2 cut(s) 133, 468
RsaI GTAC 3 cut(s) 587, 602, 956
RsaNI GTAC 3 cut(s) 586, 601, 955
RseI CAYNNNNRTG 1 cut(s) 1188
SacI GAGCTC 1 cut(s) 927
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 8 cut(s) 37, 40, 438, 472, 623, 829, 931, 1177
Sau3AI GATC 1 cut(s) 592
Sau96I GGNCC 3 cut(s) 376, 562, 1119
ScrFI CCNGG 4 cut(s) 134, 143, 1113, 1208
SduI GDGCHC 5 cut(s) 334, 426, 651, 711, 927
SfaNI GCATC 3 cut(s) 88, 175, 424
SfcI CTRYAG 2 cut(s) 723, 863
SfuI TTCGAA 1 cut(s) 612
SgrAI CRCCGGYG 1 cut(s) 334
SinI GGWCC 2 cut(s) 376, 562
SmiMI CAYNNNNRTG 1 cut(s) 1188
SmlI CTYRAG 1 cut(s) 1076
SmoI CTYRAG 1 cut(s) 1076
SphI GCATGC 1 cut(s) 1111
Sse9I AATT 6 cut(s) 286, 690, 730, 941, 1012, 1030
SseBI AGGCCT 2 cut(s) 242, 1231
SsiI CCGC 8 cut(s) 36, 124, 150, 471, 535, 928, 1304, 1793
SspMI CTAG 1 cut(s) 576
SstI GAGCTC 1 cut(s) 927
StuI AGGCCT 2 cut(s) 242, 1231
StyD4I CCNGG 4 cut(s) 132, 141, 1111, 1206
TaaI ACNGT 3 cut(s) 283, 361, 718
TaqI TCGA 4 cut(s) 414, 567, 612, 1593
TasI AATT 6 cut(s) 286, 690, 730, 941, 1012, 1030
TauI GCSGC 2 cut(s) 39, 474
TfiI GAWTC 1 cut(s) 678
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 3 cut(s) 757, 1045, 1173
TseFI GTSAC 2 cut(s) 152, 976
TseI GCWGC 6 cut(s) 39, 437, 622, 828, 930, 1176
Tsp45I GTSAC 2 cut(s) 152, 976
TspDTI ATGAA 6 cut(s) 57, 103, 363, 796, 797, 824
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 3 cut(s) 757, 1045, 1173
Van91I CCANNNNNTGG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 330
VpaK11BI GGWCC 2 cut(s) 376, 562
XapI RAATTY 1 cut(s) 730
XceI RCATGY 1 cut(s) 1111
XspI CTAG 1 cut(s) 576
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.