Rmu_ssc0000050.1_g000009

Pollen-specific leucine-rich repeat extensin-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000050.1
Physical Location & Seq
Forward (+)
43140 .. 45281
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000050.1_g000009.1.cds

Sequence Viewer

Length: 2142 bp
atggcaactattctcacacacaacgctttaggcttctctctgttgatcttctccatttacctctcgtctttctcatccctcacctcggccttgaccaatgacgaagcctcatacatagcgaaacgccaactcacggcactccctgaaaatggtgatctaccagatgactacaaaatcgaagtcgatgcgaagctcacattcgccaatgacaggctcaagtcagcctatgtgggcctccatgcactgaaaaacgccatctactccgacccgactaacttcacggccaattgggaaggacctgatgtgtgtaaatacaatggggttttctgctctccggcgcttgacgatgagaaactgaacgttgtggctggtctggacctcaaccatgcagacatcgccgctcactttccggtcgaattcgggctcctgactgatctggctctcgtccaccttaactccaacaggttctgtggaattgtgccgcggagcttcaggaggctcaaactcatgtttgaattcgacatcagcaacaaccgattcgtcggcgagtttccgatggtcgttctagaatggccggggattaagtaccttgacatcagatacaacgagttcgaaggggagttgcctccgaatctgttctggaagccattcgatgccattttcttgaaccacaacaggtttacatctaatatcccagagacgctaggaaactcgactgtaacggttgtgacttttggttttaacaaattcagtgggtgcatacctcgcagcattgggcagatgcctaatgtggaggagttgatgttcatgaacaacaatatgagtgggtgctttcctgaggagatagggaatctagggaatgtgactgttctggatgtgagcaataacgggctcatagggccattgccgaagagtcttgtgaacctgaagaccattgaggttttggatattggtttcaatatgttgacagggtttgtgtcggagaagatatgcagcttgcccaagttggaaaattttacgtttgcttacaactattttagtggggagcatcagaaatgtttgcctaatccaaacgcaaaattggcattgaacgatgaaggcaactgtttccccggcagacccaatcagaagaataccaagacttgcttccctgtggtgaccaagcttgtggactgtagcaagaattgtggcgggccttctacaccaaaggtcgaaccacctcccactccaaagcccgaaccacctcctacaccaaaggttgagccacctccaacccctaaggccgagccacctcccacgcctaaggttgaaccacctccaacgccaaaggctgagccaccaccggttaagtccccaccaccaccagtgcactctccaccgccaccggttcactcccctccaccgccaccggttcactcccctccaccaccaccggttcagtccccaccaccaccggttcactcccctccaccgccaccagtgcactcgccaccaccaccggttcactcgccaccaccaccggttcagtccccaccaccaccagttcactcccctccaccaccaccggtttactcgccaccaccaccggttcagtccccaccaccaccggttcactcgccgccaccaccggttcactcctcaccaccaccaccggttcactcgccaccaccaccggttcagtccccaccaccaccggttcagtcgccaccaccaccggttcagtccccaccgccacccgttcactccccaccgccaccggttcagtccctatccccaccggtgcactcccctccgccaccggttcagtccccacctccaccggtgcactccccaccaccacccgttcagtccccaccaccacccgttcagtccccgccaccaccggtgcactcctctccaccaccggttcagtccccaccaccaccagtccattctcccccacctccggtttactcccctccaccaccagttcactcagccccaccaccacctgtcccgtcaccacctcctccagctccagctccatctcctcctccccctgctcctgtgcaggcttcaccaccctacgatgatgtagtcctcccaccaatcattggcgcacagtactcgtcaccaccgccaccaatgttcccaggatactaa

Protein Analysis

713

Amino Acids

76.2

Weight (kDa)

6.07

Isoelectric Point (pI)

91.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 2093
AccBSI CCGCTC 1 cut(s) 401
AccII CGCG 1 cut(s) 484
AclI AACGTT 1 cut(s) 360
AcoI YGGCCR 2 cut(s) 282, 572
AcsI RAATTY 4 cut(s) 416, 515, 746, 1012
AcuI CTGAAG 2 cut(s) 475, 947
AfaI GTAC 2 cut(s) 587, 2105
AfiI CCNNNNNNNGG 6 cut(s) 85, 133, 149, 210, 1945, 2093
AgsI TTSAA 5 cut(s) 515, 667, 958, 1090, 1310
AjnI CCWGG 1 cut(s) 2131
AjuI GAANNNNNNNTTGG 2 cut(s) 1130, 1162
AloI GAACNNNNNNTCC 2 cut(s) 788, 820
AluBI AGCT 6 cut(s) 193, 489, 996, 1165, 2015, 2021
AluI AGCT 6 cut(s) 193, 489, 996, 1165, 2015, 2021
Alw21I GWGCWC 5 cut(s) 1371, 1485, 1785, 1827, 1890
Alw26I GTCTC 1 cut(s) 692
Alw44I GTGCAC 5 cut(s) 1367, 1481, 1781, 1823, 1886
AlwNI CAGNNNCTG 1 cut(s) 468
AoxI GGCC 7 cut(s) 87, 232, 282, 572, 899, 1193, 1281
ApaLI GTGCAC 5 cut(s) 1367, 1481, 1781, 1823, 1886
ApeKI GCWGC 2 cut(s) 768, 993
ApoI RAATTY 4 cut(s) 416, 515, 746, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
Asp700I GAANNNNTTC 2 cut(s) 635, 647
AspLEI GCGC 2 cut(s) 340, 2099
AspS9I GGNCC 5 cut(s) 232, 296, 376, 899, 1193
AsuC2I CCSGG 2 cut(s) 576, 1113
AsuHPI GGTGA 7 cut(s) 73, 164, 1168, 1632, 1992, 2049, 2103
AsuII TTCGAA 1 cut(s) 612
AvaII GGWCC 2 cut(s) 296, 376
AxyI CCTNAGG 3 cut(s) 837, 1278, 1302
BaeGI GKGCMC 5 cut(s) 1371, 1485, 1785, 1827, 1890
BanII GRGCYC 2 cut(s) 426, 894
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 5 cut(s) 1371, 1485, 1785, 1827, 1890
BbvI GCAGC 2 cut(s) 780, 1005
BccI CCATC 3 cut(s) 263, 550, 2032
BceAI ACGGC 2 cut(s) 150, 297
BcgI CGANNNNNNTGC 4 cut(s) 167, 201, 2088, 2122
BciT130I CCWGG 1 cut(s) 2133
BciVI GTATCC 1 cut(s) 2129
BcnI CCSGG 2 cut(s) 576, 1113
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 3 cut(s) 566, 704, 854
BfmI CTRYAG 1 cut(s) 1174
BfoI RGCGCY 1 cut(s) 341
BfuI GTATCC 1 cut(s) 2129
BisI GCNGC 5 cut(s) 399, 482, 769, 994, 1619
BlpI GCTNAGC 1 cut(s) 1332
BlsI GCNGC 5 cut(s) 400, 483, 770, 995, 1620
BmcAI AGTACT 1 cut(s) 2105
Bme1390I CCNGG 3 cut(s) 576, 1113, 2133
Bme18I GGWCC 2 cut(s) 296, 376
BmgT120I GGNCC 5 cut(s) 232, 296, 376, 899, 1193
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 3 cut(s) 576, 1113, 2133
BmsI GCATC 4 cut(s) 175, 643, 771, 1057
BpiI GAAGAC 1 cut(s) 935
BpmI CTGGAG 2 cut(s) 1995, 2001
Bpu1102I GCTNAGC 1 cut(s) 1332
Bpu14I TTCGAA 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 2 cut(s) 576, 1113
BsaJI CCNNGG 5 cut(s) 84, 482, 575, 1111, 2131
BsaXI ACNNNNNCTCC 4 cut(s) 440, 470, 788, 818
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 133, 149, 210, 1945, 2093
Bse1I ACTGG 5 cut(s) 1364, 1478, 1541, 1925, 1967
Bse21I CCTNAGG 3 cut(s) 837, 1278, 1302
Bse3DI GCAATG 1 cut(s) 902
BseBI CCWGG 1 cut(s) 2133
BseDI CCNNGG 5 cut(s) 84, 482, 575, 1111, 2131
BseGI GGATG 2 cut(s) 74, 880
BseLI CCNNNNNNNGG 6 cut(s) 85, 133, 149, 210, 1945, 2093
BseMI GCAATG 1 cut(s) 902
BseMII CTCAG 3 cut(s) 828, 1323, 1989
BseNI ACTGG 5 cut(s) 1364, 1478, 1541, 1925, 1967
BseRI GAGGAG 7 cut(s) 809, 854, 1627, 1882, 1998, 2019, 2022
BseSI GKGCMC 5 cut(s) 1371, 1485, 1785, 1827, 1890
BseXI GCAGC 2 cut(s) 780, 1005
BsgI GTGCAG 1 cut(s) 2069
Bsh1236I CGCG 1 cut(s) 484
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 7 cut(s) 89, 234, 284, 574, 901, 1195, 1283
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 5 cut(s) 1371, 1485, 1785, 1827, 1890
BslI CCNNNNNNNGG 6 cut(s) 85, 133, 149, 210, 1945, 2093
BsmAI GTCTC 1 cut(s) 692
BsmBI CGTCTC 1 cut(s) 692
BsnI GGCC 7 cut(s) 89, 234, 284, 574, 901, 1195, 1283
Bsp119I TTCGAA 1 cut(s) 612
Bsp1286I GDGCHC 7 cut(s) 426, 894, 1371, 1485, 1785, 1827, 1890
Bsp143I GATC 3 cut(s) 45, 154, 433
Bsp1720I GCTNAGC 1 cut(s) 1332
BspANI GGCC 7 cut(s) 89, 234, 284, 574, 901, 1195, 1283
BspCNI CTCAG 3 cut(s) 829, 1324, 1988
BspFNI CGCG 1 cut(s) 484
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 1 cut(s) 425
BspT104I TTCGAA 1 cut(s) 612
BsrBI CCGCTC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 902
BsrI ACTGG 5 cut(s) 1364, 1478, 1541, 1925, 1967
BssECI CCNNGG 5 cut(s) 84, 482, 575, 1111, 2131
BssMI GATC 3 cut(s) 45, 154, 433
Bst2UI CCWGG 1 cut(s) 2133
Bst4CI ACNGT 6 cut(s) 718, 724, 868, 1106, 1175, 2103
Bst6I CTCTTC 1 cut(s) 905
BstBI TTCGAA 1 cut(s) 612
BstC8I GCNNGC 3 cut(s) 998, 1193, 2052
BstDEI CTNAG 5 cut(s) 837, 1278, 1302, 1332, 1975
BstDSI CCRYGG 1 cut(s) 482
BstEII GGTNACC 1 cut(s) 1156
BstF5I GGATG 2 cut(s) 74, 880
BstFNI CGCG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 2 cut(s) 340, 2099
BstKTI GATC 3 cut(s) 48, 157, 436
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 3 cut(s) 45, 154, 433
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 5 cut(s) 395, 765, 898, 1082, 1480
BstNI CCWGG 1 cut(s) 2133
BstPI GGTNACC 1 cut(s) 1156
BstSCI CCNGG 3 cut(s) 574, 1111, 2131
BstSFI CTRYAG 1 cut(s) 1174
BstSLI GKGCMC 5 cut(s) 1371, 1485, 1785, 1827, 1890
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 780, 1005
BstV2I GAAGAC 1 cut(s) 935
BstXI CCANNNNNNTGG 1 cut(s) 1168
Bsu36I CCTNAGG 3 cut(s) 837, 1278, 1302
BsuI GTATCC 1 cut(s) 2129
BsuRI GGCC 7 cut(s) 89, 234, 284, 574, 901, 1195, 1283
BtgI CCRYGG 1 cut(s) 482
BtgZI GCGATG 1 cut(s) 379
BtsCI GGATG 2 cut(s) 74, 880
BtsIMutI CAGTG 4 cut(s) 242, 757, 1371, 1485
Cac8I GCNNGC 3 cut(s) 998, 1193, 2052
CaiI CAGNNNCTG 1 cut(s) 468
CciI TCATGA 1 cut(s) 807
CfoI GCGC 2 cut(s) 340, 2099
Cfr13I GGNCC 5 cut(s) 232, 296, 376, 899, 1193
Cfr42I CCGCGG 1 cut(s) 485
CseI GACGC 1 cut(s) 709
Csp6I GTAC 2 cut(s) 586, 2104
CspCI CAANNNNNGTGG 6 cut(s) 733, 768, 805, 840, 1168, 1203
CviAII CATG 4 cut(s) 239, 386, 508, 808
CviQI GTAC 2 cut(s) 586, 2104
DdeI CTNAG 5 cut(s) 837, 1278, 1302, 1332, 1975
DpnI GATC 3 cut(s) 47, 156, 435
DpnII GATC 3 cut(s) 45, 154, 433
EaeI YGGCCR 2 cut(s) 282, 572
Eam1104I CTCTTC 1 cut(s) 905
EarI CTCTTC 1 cut(s) 905
EciI GGCGGA 1 cut(s) 1782
Eco24I GRGCYC 2 cut(s) 426, 894
Eco47I GGWCC 2 cut(s) 296, 376
Eco57I CTGAAG 2 cut(s) 475, 947
Eco81I CCTNAGG 3 cut(s) 837, 1278, 1302
Eco91I GGTNACC 1 cut(s) 1156
EcoO109I RGGNCCY 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 1156
EcoRI GAATTC 2 cut(s) 416, 515
EcoRII CCWGG 1 cut(s) 2131
EcoT38I GRGCYC 2 cut(s) 426, 894
Esp3I CGTCTC 1 cut(s) 692
FaeI CATG 4 cut(s) 242, 389, 511, 811
FalI AAGNNNNNCTT 2 cut(s) 1130, 1162
FatI CATG 4 cut(s) 238, 385, 507, 807
FauI CCCGC 2 cut(s) 1184, 1881
Fnu4HI GCNGC 5 cut(s) 399, 482, 769, 994, 1619
FokI GGATG 2 cut(s) 61, 887
FriOI GRGCYC 2 cut(s) 426, 894
Fsp4HI GCNGC 5 cut(s) 399, 482, 769, 994, 1619
FspBI CTAG 3 cut(s) 566, 704, 854
GlaI GCGC 2 cut(s) 339, 2098
GluI GCNGC 5 cut(s) 399, 482, 769, 994, 1619
GsuI CTGGAG 2 cut(s) 1995, 2001
HaeII RGCGCY 1 cut(s) 341
HaeIII GGCC 7 cut(s) 89, 234, 284, 574, 901, 1195, 1283
HgaI GACGC 1 cut(s) 709
HhaI GCGC 2 cut(s) 340, 2099
Hin1II CATG 4 cut(s) 242, 389, 511, 811
Hin6I GCGC 2 cut(s) 338, 2097
HinP1I GCGC 2 cut(s) 338, 2097
HincII GTYRAC 1 cut(s) 966
HindII GTYRAC 1 cut(s) 966
HindIII AAGCTT 1 cut(s) 1163
HinfI GANTC 4 cut(s) 537, 631, 850, 913
HphI GGTGA 7 cut(s) 73, 164, 1168, 1632, 1992, 2049, 2103
Hpy188I TCNGA 7 cut(s) 265, 555, 599, 630, 982, 1053, 1128
Hpy188III TCNNGA 9 cut(s) 374, 427, 493, 566, 640, 664, 808, 836, 872
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 4 cut(s) 287, 608, 1091, 1206
HpyCH4III ACNGT 6 cut(s) 718, 724, 868, 1106, 1175, 2103
HpyCH4IV ACGT 2 cut(s) 360, 1019
HpyF10VI GCNNNNNNNGC 5 cut(s) 395, 765, 898, 1082, 1480
HpyF3I CTNAG 5 cut(s) 837, 1278, 1302, 1332, 1975
HpySE526I ACGT 2 cut(s) 360, 1019
Hsp92II CATG 4 cut(s) 242, 389, 511, 811
HspAI GCGC 2 cut(s) 338, 2097
KspI CCGCGG 1 cut(s) 485
Kzo9I GATC 3 cut(s) 45, 154, 433
LmnI GCTCC 6 cut(s) 429, 486, 1045, 2020, 2026, 2047
Lsp1109I GCAGC 2 cut(s) 780, 1005
LweI GCATC 4 cut(s) 175, 643, 771, 1057
MaeI CTAG 3 cut(s) 566, 704, 854
MaeII ACGT 2 cut(s) 360, 1019
MaeIII GTNAC 6 cut(s) 718, 727, 862, 1156, 1998, 2109
MalI GATC 3 cut(s) 47, 156, 435
MbiI CCGCTC 1 cut(s) 401
MboI GATC 3 cut(s) 45, 154, 433
MboII GAAGA 5 cut(s) 40, 922, 940, 997, 1141
MfeI CAATTG 1 cut(s) 286
MhlI GDGCHC 7 cut(s) 426, 894, 1371, 1485, 1785, 1827, 1890
MluCI AATT 8 cut(s) 286, 416, 474, 515, 746, 1012, 1079, 1183
MlyI GAGTC 1 cut(s) 922
MmeI TCCRAC 6 cut(s) 288, 483, 960, 987, 1295, 1343
MroXI GAANNNNTTC 2 cut(s) 635, 647
MseI TTAA 4 cut(s) 453, 582, 741, 1347
MspA1I CMGCKG 1 cut(s) 484
MspR9I CCNGG 3 cut(s) 576, 1113, 2133
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 2133
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 5 cut(s) 395, 765, 898, 1082, 1480
NciI CCSGG 2 cut(s) 576, 1113
NdeII GATC 3 cut(s) 45, 154, 433
NlaIII CATG 4 cut(s) 242, 389, 511, 811
NlaIV GGNNCC 1 cut(s) 425
NmeAIII GCCGAG 2 cut(s) 65, 1309
NmuCI GTSAC 5 cut(s) 727, 862, 1156, 1998, 2109
NspV TTCGAA 1 cut(s) 612
PagI TCATGA 1 cut(s) 807
PdmI GAANNNNTTC 2 cut(s) 635, 647
PfeI GAWTC 3 cut(s) 537, 631, 850
PflMI CCANNNNNTGG 1 cut(s) 2093
PkrI GCNGC 5 cut(s) 400, 483, 770, 995, 1620
PleI GAGTC 1 cut(s) 921
PpsI GAGTC 1 cut(s) 921
PpuMI RGGWCCY 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 2131
PspEI GGTNACC 1 cut(s) 1156
PspGI CCWGG 1 cut(s) 2131
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 5 cut(s) 232, 296, 376, 899, 1193
PspPPI RGGWCCY 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 468
RsaI GTAC 2 cut(s) 587, 2105
RsaNI GTAC 2 cut(s) 586, 2104
SacII CCGCGG 1 cut(s) 485
SaqAI TTAA 4 cut(s) 453, 582, 741, 1347
SatI GCNGC 5 cut(s) 399, 482, 769, 994, 1619
Sau3AI GATC 3 cut(s) 45, 154, 433
Sau96I GGNCC 5 cut(s) 232, 296, 376, 899, 1193
ScaI AGTACT 1 cut(s) 2105
SchI GAGTC 1 cut(s) 922
ScrFI CCNGG 3 cut(s) 576, 1113, 2133
SduI GDGCHC 7 cut(s) 426, 894, 1371, 1485, 1785, 1827, 1890
SfaNI GCATC 4 cut(s) 175, 643, 771, 1057
SfcI CTRYAG 1 cut(s) 1174
Sfr303I CCGCGG 1 cut(s) 485
SfuI TTCGAA 1 cut(s) 612
SgrAI CRCCGGYG 3 cut(s) 1777, 1819, 1882
SgrBI CCGCGG 1 cut(s) 485
SinI GGWCC 2 cut(s) 296, 376
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 8 cut(s) 286, 416, 474, 515, 746, 1012, 1079, 1183
SspMI CTAG 3 cut(s) 566, 704, 854
StyD4I CCNGG 3 cut(s) 574, 1111, 2131
TaaI ACNGT 6 cut(s) 718, 724, 868, 1106, 1175, 2103
TaiI ACGT 2 cut(s) 363, 1022
TaqI TCGA 8 cut(s) 177, 183, 414, 519, 612, 651, 713, 1212
TasI AATT 8 cut(s) 286, 416, 474, 515, 746, 1012, 1079, 1183
TatI WGTACW 1 cut(s) 2103
TauI GCSGC 3 cut(s) 401, 484, 1621
TfiI GAWTC 3 cut(s) 537, 631, 850
Tru1I TTAA 4 cut(s) 453, 582, 741, 1347
Tru9I TTAA 4 cut(s) 453, 582, 741, 1347
TscAI CASTG 4 cut(s) 249, 757, 1371, 1485
TseFI GTSAC 5 cut(s) 727, 862, 1156, 1998, 2109
TseI GCWGC 2 cut(s) 768, 993
Tsp45I GTSAC 5 cut(s) 727, 862, 1156, 1998, 2109
TspDTI ATGAA 3 cut(s) 796, 824, 1110
TspRI CASTG 4 cut(s) 249, 757, 1371, 1485
Van91I CCANNNNNTGG 1 cut(s) 2093
VneI GTGCAC 5 cut(s) 1367, 1481, 1781, 1823, 1886
VpaK11BI GGWCC 2 cut(s) 296, 376
XapI RAATTY 4 cut(s) 416, 515, 746, 1012
XbaI TCTAGA 1 cut(s) 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XmnI GAANNNNTTC 2 cut(s) 635, 647
XspI CTAG 3 cut(s) 566, 704, 854
ZrmI AGTACT 1 cut(s) 2105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.