Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8277385.1

Orthogroup ID

OG0008939

Physical Location & Seq

Genomic Coordinates Forward (+)

417 .. 841

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8277385.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 425 bp

atggcaactattctcacacacaacgctttaggcttctctctgttgatcttctccatttacctctcgtctttctcatccctcacctcggccttgaccaatgacgaagcctcatacatagcgaaacgccaactcacggcactccctgaaaatggtgatctaccagatgactacaaaatcgaagtcgatgcgaagctcacattcgccaatgacaggctcaagtcagcctatgtgggcctccatgcactgaaaaacgccatctactccgacccgactaacttcacggccaattgggaaggacctgatgtgtgtaaatacaatggggttttctgctctccggcgcttgacgatgagaaactgaacgttgtggctggtctggacctcaaccatgcagacatcgccgctcactttccggtcgaattcgggct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005198 GO:0005199 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

142

Amino Acids

15.47

Weight (kDa)

4.61

Isoelectric Point (pI)

21.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15880 AT4G33970
fragaria_vesca	FvH4_2g07100
malus_domestica	MD05G1073600.v1.1 MD10G1087900.v1.1
prunus_persica	Prupe.8G113900_v2.0.a1 Prupe.8G113900_v2.0.a1
pyrus_communis	pycom05g06560 pycom10g07010
rosa_chinensis	RchiOBHm_Chr6g0259591
rosa_laevigata	RLG00000014519
rosa_multiflora	Rmu_co8277385.1_g000001 Rmu_sc0000536.1_g000035 Rmu_ssc0000050.1_g000009
rosa_roxburghii	Rroxscaffold_7G00206910
rosa_rugosa	Rorug05G0589800 Rorug05G0589900
rosa_samantha	Rh6AG106000 Rh6BG100400 Rh6CG094900 Rh6DG089000
rosa_wichuraiana	Rw6G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	401
AciI	CCGC	1 cut(s)	399
AclI	AACGTT	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	416
AfiI	CCNNNNNNNGG	4 cut(s)	85, 133, 149, 210
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AoxI	GGCC	3 cut(s)	87, 232, 282
ApoI	RAATTY	1 cut(s)	416
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	232, 296, 376
AsuHPI	GGTGA	2 cut(s)	73, 164
AvaII	GGWCC	2 cut(s)	296, 376
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	2 cut(s)	150, 297
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BfoI	RGCGCY	1 cut(s)	341
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme18I	GGWCC	2 cut(s)	296, 376
BmgT120I	GGNCC	3 cut(s)	232, 296, 376
BmsI	GCATC	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 133, 149, 210
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	4 cut(s)	85, 133, 149, 210
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	89, 234, 284
BsiEI	CGRYCG	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	335, 410
BslI	CCNNNNNNNGG	4 cut(s)	85, 133, 149, 210
BsnI	GGCC	3 cut(s)	89, 234, 284
Bsp143I	GATC	2 cut(s)	45, 154
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	3 cut(s)	89, 234, 284
BsrBI	CCGCTC	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	2 cut(s)	45, 154
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	2 cut(s)	48, 157
BstMBI	GATC	2 cut(s)	45, 154
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	89, 234, 284
BtgZI	GCGATG	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	232, 296, 376
CviAII	CATG	2 cut(s)	239, 386
DpnI	GATC	2 cut(s)	47, 156
DpnII	GATC	2 cut(s)	45, 154
EaeI	YGGCCR	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	296, 376
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	416
FaeI	CATG	2 cut(s)	242, 389
FaiI	YATR	5 cut(s)	112, 116, 228, 240, 387
FatI	CATG	2 cut(s)	238, 385
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	399
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	89, 234, 284
HapII	CCGG	2 cut(s)	335, 410
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	242, 389
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HpaII	CCGG	2 cut(s)	335, 410
HphI	GGTGA	2 cut(s)	73, 164
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	2 cut(s)	242, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	242, 389
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	2 cut(s)	45, 154
LpnPI	CCDG	7 cut(s)	156, 174, 196, 312, 348, 354, 359
LweI	GCATC	1 cut(s)	175
MaeII	ACGT	1 cut(s)	360
MalI	GATC	2 cut(s)	47, 156
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	2 cut(s)	45, 154
MboII	GAAGA	1 cut(s)	40
MfeI	CAATTG	1 cut(s)	286
MluCI	AATT	2 cut(s)	286, 416
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	6 cut(s)	71, 89, 94, 118, 245, 389
MspI	CCGG	2 cut(s)	335, 410
MunI	CAATTG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeII	GATC	2 cut(s)	45, 154
NlaIII	CATG	2 cut(s)	242, 389
NmeAIII	GCCGAG	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	296
Psp1406I	AACGTT	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	296
PspPI	GGNCC	3 cut(s)	232, 296, 376
PspPPI	RGGWCCY	1 cut(s)	296
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	45, 154
Sau96I	GGNCC	3 cut(s)	232, 296, 376
SetI	ASST	6 cut(s)	63, 86, 195, 301, 363, 381
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	2 cut(s)	296, 376
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	286, 416
SsiI	CCGC	1 cut(s)	399
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	3 cut(s)	177, 183, 414
TasI	AATT	2 cut(s)	286, 416
TauI	GCSGC	1 cut(s)	401
TscAI	CASTG	1 cut(s)	249
TspRI	CASTG	1 cut(s)	249
VpaK11BI	GGWCC	2 cut(s)	296, 376
XapI	RAATTY	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.