Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008939

Physical Location & Seq

Genomic Coordinates Forward (+)

78798759 .. 78800622

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0589800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTTATATATGCACAATGAACTAGCAAATTTGACACCCAATCCAAATTTGCATCAACACATCAAAGCCACCATGAAAACATCCCAAGATTCTCCCAGTTCAGAAAAGCTTCTTGAAGGTGAAGAAAAACAATGCCTAAAAGAACCTCCAGCTATCACTATGATCACAACCAAAAAACTAGCTTTCATCCCATTACTCTTCCTCATCTACTTTCAAGTCTCTGGTGGCCCTTATGGCACAGAAACCATGGTTGGTGCTGGGGGTACTTTCTATGCAATCCTTGGCATCATATTCTTCCCAATCCTCTGGAGCGTTCCCGAGGCCCTCATCACTGCTGAACTGTCCACCGCCTTTCCCGGCAATGGTGGCTTTGTCATATGGACTCACCAAGCCTTTGGTCCCTTCTGGGGCTTCCTCATTGGGTTTTGGAATTGTTGGGACAATGTTAGTACTTTAGTACGTAGTAGGGGTGTTACACAACCCTCAAAAACATTACCAAAAGCATTTCTCTCAAGTGGATTGATCACTTGCTTTGCTCATTTAATACCTCTTCTAGCTTCAATTGGGGCTATTAAAATTGACCTAGATGATTGGGTTGATGGATATTACACAATTGTGGGAGAAAAAATTGTGGGGAAAAAGTTCAAAAGGTGGATTAGGATTGGAGCCTTTTTATCTGGTATTGGTGTTTTTCAGTCCCAGCTGAGCAGTTGTTCATATCAGCTGCTAGGTATGACTGAATTAGGGTTGTTACCAACATTTTTCAGTGCACGGTCCAAACGGTTCAACACTCCTTGGGTGGGGATTCTGATATCAACTGATATCGATCTTAATTTCAAGTATGAAATTCAGACATGTCACATCATTAGTGAATGTTTTCTACAGTCTGGGGATGATGTTCGAATTCGCAGCTTTTATTTCCTTGAGGATGAAGTTTCCAGAAGTGGCTTCAAAGTTCCACTTACAAAGCTGAGGAGTCTGATAGCAATGTGCTTCATTCCATTTTGGTTTTTATTGTATGTGGTTTTTGTTGGGCAGCCAATTGTGTATTTGGTGGTTGCTTTGCTGACCATGTTGGGCATTCTTTGGTATTACTGCATGAGGATAGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005198 GO:0005199 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

371

Amino Acids

41.7

Weight (kDa)

8.33

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	71 - 153	1e-09	Amino acid permease
AA_permease_2	PF13520	160 - 271	1.1e-08	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15880 AT4G33970
fragaria_vesca	FvH4_2g07100
malus_domestica	MD05G1073600.v1.1 MD10G1087900.v1.1
prunus_persica	Prupe.8G113900_v2.0.a1 Prupe.8G113900_v2.0.a1
pyrus_communis	pycom05g06560 pycom10g07010
rosa_chinensis	RchiOBHm_Chr6g0259591
rosa_laevigata	RLG00000014519
rosa_multiflora	Rmu_co8277385.1_g000001 Rmu_sc0000536.1_g000035 Rmu_ssc0000050.1_g000009
rosa_roxburghii	Rroxscaffold_7G00206910
rosa_rugosa	Rorug05G0589800 Rorug05G0589900
rosa_samantha	Rh6AG106000 Rh6BG100400 Rh6CG094900 Rh6DG089000
rosa_wichuraiana	Rw6G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	348
AcsI	RAATTY	4 cut(s)	28, 46, 846, 903
AfaI	GTAC	3 cut(s)	265, 451, 459
AfiI	CCNNNNNNNGG	3 cut(s)	362, 407, 800
AflIII	ACRYGT	1 cut(s)	854
AgsI	TTSAA	7 cut(s)	116, 215, 561, 646, 787, 838, 952
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	8 cut(s)	109, 152, 182, 557, 703, 724, 912, 970
AluI	AGCT	8 cut(s)	109, 152, 182, 557, 703, 724, 912, 970
Alw21I	GWGCWC	1 cut(s)	772
Alw26I	GTCTC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	768
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	2 cut(s)	226, 321
ApaLI	GTGCAC	1 cut(s)	768
ApeKI	GCWGC	3 cut(s)	724, 909, 1036
ApoI	RAATTY	4 cut(s)	28, 46, 846, 903
Asp700I	GAANNNNTTC	3 cut(s)	108, 641, 876
AspS9I	GGNCC	4 cut(s)	227, 322, 398, 774
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	131, 377
AsuII	TTCGAA	1 cut(s)	901
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	398, 774
BaeGI	GKGCMC	1 cut(s)	772
Bbv12I	GWGCWC	1 cut(s)	772
BbvCI	CCTCAGC	1 cut(s)	971
BbvI	GCAGC	3 cut(s)	711, 921, 1048
BccI	CCATC	1 cut(s)	593
BclI	TGATCA	2 cut(s)	162, 522
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	5 cut(s)	23, 179, 554, 584, 728
BfmI	CTRYAG	1 cut(s)	881
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	3 cut(s)	725, 910, 1037
BlpI	GCTNAGC	1 cut(s)	704
BlsI	GCNGC	3 cut(s)	726, 911, 1038
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	2 cut(s)	398, 774
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	227, 322, 398, 774
BmiI	GGNNCC	2 cut(s)	400, 667
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	61, 294
BmuI	ACTGGG	1 cut(s)	90
BpmI	CTGGAG	2 cut(s)	132, 328
Bpu10I	CCTNAGC	1 cut(s)	971
Bpu1102I	GCTNAGC	1 cut(s)	704
Bpu14I	TTCGAA	1 cut(s)	901
BpuEI	CTTGAG	2 cut(s)	496, 944
BpuMI	CCSGG	1 cut(s)	357
Bsa29I	ATCGAT	1 cut(s)	825
BsaAI	YACGTR	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	825
BsaJI	CCNNGG	4 cut(s)	246, 280, 318, 794
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 407, 800
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	2 cut(s)	367, 993
Bse8I	GATNNNNATC	1 cut(s)	825
BseCI	ATCGAT	1 cut(s)	825
BseDI	CCNNGG	4 cut(s)	246, 280, 318, 794
BseGI	GGATG	4 cut(s)	80, 186, 898, 934
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	3 cut(s)	362, 407, 800
BseMI	GCAATG	2 cut(s)	367, 993
BseMII	CTCAG	2 cut(s)	695, 962
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	988
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	3 cut(s)	711, 921, 1048
BseYI	CCCAGC	2 cut(s)	257, 699
BshFI	GGCC	2 cut(s)	228, 323
BshVI	ATCGAT	1 cut(s)	825
BsiHKAI	GWGCWC	1 cut(s)	772
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	3 cut(s)	384, 452, 682
BslI	CCNNNNNNNGG	3 cut(s)	362, 407, 800
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	3 cut(s)	384, 452, 682
BsmI	GAATGC	1 cut(s)	1080
BsnI	GGCC	2 cut(s)	228, 323
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp143I	GATC	3 cut(s)	162, 522, 826
Bsp1720I	GCTNAGC	1 cut(s)	704
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	2 cut(s)	228, 323
BspCNI	CTCAG	2 cut(s)	696, 963
BspDI	ATCGAT	1 cut(s)	825
BspLI	GGNNCC	2 cut(s)	400, 667
BspT104I	TTCGAA	1 cut(s)	901
BsrDI	GCAATG	2 cut(s)	367, 993
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	4 cut(s)	246, 280, 318, 794
BssMI	GATC	3 cut(s)	162, 522, 826
BssT1I	CCWWGG	3 cut(s)	246, 280, 794
Bst4CI	ACNGT	4 cut(s)	342, 774, 783, 885
Bst6I	CTCTTC	2 cut(s)	203, 555
BstBAI	YACGTR	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	901
BstDEI	CTNAG	2 cut(s)	704, 971
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	4 cut(s)	80, 186, 898, 934
BstKTI	GATC	3 cut(s)	165, 525, 829
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	162, 522, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 366
BstNSI	RCATGY	1 cut(s)	858
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	881
BstSLI	GKGCMC	1 cut(s)	772
BstSNI	TACGTA	1 cut(s)	461
BstV1I	GCAGC	3 cut(s)	711, 921, 1048
BstXI	CCANNNNNNTGG	2 cut(s)	306, 395
Bsu15I	ATCGAT	1 cut(s)	825
BsuRI	GGCC	2 cut(s)	228, 323
BsuTUI	ATCGAT	1 cut(s)	825
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	4 cut(s)	80, 186, 898, 934
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	330, 772
Cfr13I	GGNCC	4 cut(s)	227, 322, 398, 774
ClaI	ATCGAT	1 cut(s)	825
Csp6I	GTAC	3 cut(s)	264, 450, 458
CviAII	CATG	5 cut(s)	73, 247, 855, 1072, 1099
CviQI	GTAC	3 cut(s)	264, 450, 458
DdeI	CTNAG	2 cut(s)	704, 971
DpnI	GATC	3 cut(s)	164, 524, 828
DpnII	GATC	3 cut(s)	162, 522, 826
Eam1104I	CTCTTC	2 cut(s)	203, 555
EarI	CTCTTC	2 cut(s)	203, 555
Eco105I	TACGTA	1 cut(s)	461
Eco130I	CCWWGG	3 cut(s)	246, 280, 794
Eco32I	GATATC	2 cut(s)	813, 823
Eco47I	GGWCC	2 cut(s)	398, 774
Eco88I	CYCGRG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	903
EcoRV	GATATC	2 cut(s)	813, 823
EcoT14I	CCWWGG	3 cut(s)	246, 280, 794
ErhI	CCWWGG	3 cut(s)	246, 280, 794
FaeI	CATG	5 cut(s)	76, 250, 858, 1075, 1102
FalI	AAGNNNNNCTT	2 cut(s)	945, 977
FaqI	GGGAC	3 cut(s)	384, 452, 682
FatI	CATG	5 cut(s)	72, 246, 854, 1071, 1098
FauNDI	CATATG	1 cut(s)	377
FbaI	TGATCA	2 cut(s)	162, 522
Fnu4HI	GCNGC	3 cut(s)	725, 910, 1037
FokI	GGATG	4 cut(s)	67, 173, 905, 941
Fsp4HI	GCNGC	3 cut(s)	725, 910, 1037
FspBI	CTAG	5 cut(s)	23, 179, 554, 584, 728
GluI	GCNGC	3 cut(s)	725, 910, 1037
GsaI	CCCAGC	2 cut(s)	261, 703
GsuI	CTGGAG	2 cut(s)	132, 328
HaeIII	GGCC	2 cut(s)	228, 323
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	5 cut(s)	76, 250, 858, 1075, 1102
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	4 cut(s)	89, 382, 805, 976
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	131, 377
Hpy166II	GTNNAC	2 cut(s)	345, 770
Hpy188I	TCNGA	4 cut(s)	103, 810, 852, 981
Hpy188III	TCNNGA	4 cut(s)	113, 307, 317, 939
Hpy8I	GTNNAC	2 cut(s)	345, 770
HpyAV	CCTTC	2 cut(s)	110, 412
HpyCH4III	ACNGT	4 cut(s)	342, 774, 783, 885
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	13, 52, 275, 770, 1098
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 366
HpyF3I	CTNAG	2 cut(s)	704, 971
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	5 cut(s)	76, 250, 858, 1075, 1102
Ksp22I	TGATCA	2 cut(s)	162, 522
Kzo9I	GATC	3 cut(s)	162, 522, 826
LmnI	GCTCC	2 cut(s)	309, 665
Lsp1109I	GCAGC	3 cut(s)	711, 921, 1048
LweI	GCATC	2 cut(s)	61, 294
MaeI	CTAG	5 cut(s)	23, 179, 554, 584, 728
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	3 cut(s)	472, 750, 857
MalI	GATC	3 cut(s)	164, 524, 828
MboI	GATC	3 cut(s)	162, 522, 826
MboII	GAAGA	4 cut(s)	134, 190, 286, 542
MfeI	CAATTG	3 cut(s)	561, 612, 1041
MhlI	GDGCHC	1 cut(s)	772
MlyI	GAGTC	2 cut(s)	376, 985
MroXI	GAANNNNTTC	3 cut(s)	108, 641, 876
MseI	TTAA	3 cut(s)	542, 573, 831
MslI	CAYNNNNRTG	1 cut(s)	614
MspA1I	CMGCKG	2 cut(s)	703, 724
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	357
MunI	CAATTG	3 cut(s)	561, 612, 1041
Mva1269I	GAATGC	1 cut(s)	1080
MwoI	GCNNNNNNNGC	2 cut(s)	234, 366
NciI	CCSGG	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	3 cut(s)	162, 522, 826
NlaIII	CATG	5 cut(s)	76, 250, 858, 1075, 1102
NlaIV	GGNNCC	2 cut(s)	400, 667
NmuCI	GTSAC	1 cut(s)	857
NspI	RCATGY	1 cut(s)	858
NspV	TTCGAA	1 cut(s)	901
OliI	CACNNNNGTG	1 cut(s)	614
PciI	ACATGT	1 cut(s)	854
PctI	GAATGC	1 cut(s)	1080
PdmI	GAANNNNTTC	3 cut(s)	108, 641, 876
PfeI	GAWTC	2 cut(s)	89, 805
PkrI	GCNGC	3 cut(s)	726, 911, 1038
PleI	GAGTC	2 cut(s)	376, 984
PpsI	GAGTC	2 cut(s)	376, 984
Ppu21I	YACGTR	1 cut(s)	461
PscI	ACATGT	1 cut(s)	854
PspFI	CCCAGC	2 cut(s)	257, 699
PspN4I	GGNNCC	2 cut(s)	400, 667
PspPI	GGNCC	4 cut(s)	227, 322, 398, 774
PvuII	CAGCTG	2 cut(s)	703, 724
RsaI	GTAC	3 cut(s)	265, 451, 459
RsaNI	GTAC	3 cut(s)	264, 450, 458
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	3 cut(s)	542, 573, 831
SatI	GCNGC	3 cut(s)	725, 910, 1037
Sau3AI	GATC	3 cut(s)	162, 522, 826
Sau96I	GGNCC	4 cut(s)	227, 322, 398, 774
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	2 cut(s)	376, 985
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	772
SfaNI	GCATC	2 cut(s)	61, 294
SfcI	CTRYAG	1 cut(s)	881
SfuI	TTCGAA	1 cut(s)	901
SinI	GGWCC	2 cut(s)	398, 774
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	511, 923
SmoI	CTYRAG	2 cut(s)	511, 923
SnaBI	TACGTA	1 cut(s)	461
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	5 cut(s)	23, 179, 554, 584, 728
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	3 cut(s)	246, 280, 794
TaaI	ACNGT	4 cut(s)	342, 774, 783, 885
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	825, 901
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	2 cut(s)	89, 805
Tru1I	TTAA	3 cut(s)	542, 573, 831
Tru9I	TTAA	3 cut(s)	542, 573, 831
TscAI	CASTG	2 cut(s)	337, 772
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	3 cut(s)	724, 909, 1036
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	7 cut(s)	33, 89, 175, 705, 858, 945, 985
TspRI	CASTG	2 cut(s)	337, 772
VneI	GTGCAC	1 cut(s)	768
VpaK11BI	GGWCC	2 cut(s)	398, 774
XapI	RAATTY	4 cut(s)	28, 46, 846, 903
XceI	RCATGY	1 cut(s)	858
XmnI	GAANNNNTTC	3 cut(s)	108, 641, 876
XspI	CTAG	5 cut(s)	23, 179, 554, 584, 728
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.