Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008939

Physical Location & Seq

Genomic Coordinates Forward (+)

78817247 .. 78818011

Gene Structure 765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0589900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGACATGTCCACCCTGGAACCATTATATTATTGCAATGCAGTACAATTTTCTGGGGTTGCTCAAGAAGGTAAGAGACTTTGGATCAGAGCAAGAACTGCACCGATACATTATAGGCTCCTCAAGCTAATTCATAGCTGTCGTCGTTGGATTGACCTGTCCGGCGTGGACATGGTTCCGATCAGAATAAAACTCTACCAGCAAACAGTAACTGTCCGCTGGGATGAGTTTTGTAGAGGCCTTTGTTTTGATGAACCAAAATGGGTAACTGAAAGACGATTTATTGTCCCTGTCTCTGATTTCAAGGCATTATCGAAAATGGGTGGCTATAGAAAGATTGTGGCCGGGTATCTTTCCAGCATGCGCGTCCCAGAAGATGAACATGAAGCTATTATTCAAGAAATATTTTGGGCAATTCATCATGCCGTCCCTGAATTTCCCATTATAGTGAGGATACAGCAGTTGACTCTGCAAGTAGCGGACAATGCAATTACATCATATATTGAGGGTTTGGAGAGAGTGAGAGTTGATAGTTTGGAGGAAGCTATTAGACATGCAACTTGCGCTATTTGTAGGGAGGACCTTGATCACTTTGAAGGGATTGATAATGATGAGCAGAAGATTATTCGCTTGCCCTGCTTGCACCTTTATCATGGAGATTGCATTGCCCCTTGGCTGGAGAGGTGTCTGGACTGCCCATTGTGTCGACAGTTTATGCCTATTGTGCAAGAGGCTAATTCATCATCAAAACCCTGCTGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005198 GO:0005199 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

254

Amino Acids

29.49

Weight (kDa)

6.15

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	187 - 236	4.7e-09	Ring finger domain
zf-rbx1	PF12678	187 - 236	1.2e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15880 AT4G33970
fragaria_vesca	FvH4_2g07100
malus_domestica	MD05G1073600.v1.1 MD10G1087900.v1.1
prunus_persica	Prupe.8G113900_v2.0.a1 Prupe.8G113900_v2.0.a1
pyrus_communis	pycom05g06560 pycom10g07010
rosa_chinensis	RchiOBHm_Chr6g0259591
rosa_laevigata	RLG00000014519
rosa_multiflora	Rmu_co8277385.1_g000001 Rmu_sc0000536.1_g000035 Rmu_ssc0000050.1_g000009
rosa_roxburghii	Rroxscaffold_7G00206910
rosa_rugosa	Rorug05G0589800 Rorug05G0589900
rosa_samantha	Rh6AG106000 Rh6BG100400 Rh6CG094900 Rh6DG089000
rosa_wichuraiana	Rw6G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	706
AccII	CGCG	1 cut(s)	366
AciI	CCGC	2 cut(s)	217, 479
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	3 cut(s)	304, 398, 596
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	4 cut(s)	127, 138, 389, 545
AluI	AGCT	4 cut(s)	127, 138, 389, 545
Alw26I	GTCTC	2 cut(s)	70, 298
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	238, 342
ApeKI	GCWGC	1 cut(s)	756
ApoI	RAATTY	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	366, 566
AspS9I	GGNCC	1 cut(s)	580
AsuC2I	CCSGG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	580
BaeI	ACNNNNGTAYC	2 cut(s)	446, 479
BbvI	GCAGC	1 cut(s)	743
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	447
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	70, 298
BfmI	CTRYAG	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	1 cut(s)	757
BlsI	GCNGC	1 cut(s)	758
Bme1390I	CCNGG	2 cut(s)	17, 346
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	3 cut(s)	21, 119, 177
BmrFI	CCNGG	2 cut(s)	17, 346
BpmI	CTGGAG	1 cut(s)	698
BpuEI	CTTGAG	2 cut(s)	48, 107
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	15, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse3DI	GCAATG	2 cut(s)	43, 663
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	15, 671
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	2 cut(s)	43, 663
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	743
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	240, 344
BsiSI	CCGG	2 cut(s)	162, 345
BslFI	GGGAC	3 cut(s)	272, 353, 413
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	2 cut(s)	70, 298
BsmFI	GGGAC	3 cut(s)	272, 353, 413
BsnI	GGCC	2 cut(s)	240, 344
Bsp143I	GATC	3 cut(s)	84, 180, 586
BspACI	CCGC	2 cut(s)	217, 479
BspANI	GGCC	2 cut(s)	240, 344
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	761
BspLI	GGNNCC	3 cut(s)	21, 119, 177
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	43, 663
BssECI	CCNNGG	2 cut(s)	15, 671
BssMI	GATC	3 cut(s)	84, 180, 586
BssT1I	CCWWGG	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	3 cut(s)	208, 214, 711
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	362, 632, 641
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	366, 566
BstKTI	GATC	3 cut(s)	87, 183, 589
BstMAI	GTCTC	2 cut(s)	70, 298
BstMBI	GATC	3 cut(s)	84, 180, 586
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 124, 485, 563, 636, 640, 724
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	3 cut(s)	10, 364, 557
BstSCI	CCNGG	2 cut(s)	15, 344
BstSFI	CTRYAG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	743
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	240, 344
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	3 cut(s)	362, 632, 641
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	1 cut(s)	761
CfoI	GCGC	2 cut(s)	366, 566
Cfr13I	GGNCC	1 cut(s)	580
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	8 cut(s)	7, 172, 361, 383, 422, 554, 653, 762
CviQI	GTAC	1 cut(s)	44
DpnI	GATC	3 cut(s)	86, 182, 588
DpnII	GATC	3 cut(s)	84, 180, 586
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	671
Eco147I	AGGCCT	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	8 cut(s)	10, 175, 364, 386, 425, 557, 656, 765
FaqI	GGGAC	3 cut(s)	272, 353, 413
FatI	CATG	8 cut(s)	6, 171, 360, 382, 421, 553, 652, 761
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	706
Fnu4HI	GCNGC	1 cut(s)	757
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	757
GlaI	GCGC	2 cut(s)	365, 565
GluI	GCNGC	1 cut(s)	757
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	2 cut(s)	240, 344
HapII	CCGG	2 cut(s)	162, 345
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	2 cut(s)	366, 566
Hin1II	CATG	8 cut(s)	10, 175, 364, 386, 425, 557, 656, 765
Hin6I	GCGC	2 cut(s)	364, 564
HinP1I	GCGC	2 cut(s)	364, 564
HincII	GTYRAC	2 cut(s)	465, 707
HindII	GTYRAC	2 cut(s)	465, 707
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	162, 345
Hpy166II	GTNNAC	4 cut(s)	12, 169, 465, 707
Hpy188I	TCNGA	4 cut(s)	89, 180, 185, 298
Hpy188III	TCNNGA	4 cut(s)	65, 398, 689, 762
Hpy8I	GTNNAC	4 cut(s)	12, 169, 465, 707
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	62, 590
HpyCH4III	ACNGT	3 cut(s)	208, 214, 711
HpyCH4V	TGCA	9 cut(s)	36, 41, 101, 472, 488, 557, 643, 663, 727
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 124, 485, 563, 636, 640, 724
Hsp92II	CATG	8 cut(s)	10, 175, 364, 386, 425, 557, 656, 765
HspAI	GCGC	2 cut(s)	364, 564
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	84, 180, 586
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	1 cut(s)	743
MaeIII	GTNAC	2 cut(s)	208, 265
MalI	GATC	3 cut(s)	86, 182, 588
MboI	GATC	3 cut(s)	84, 180, 586
MboII	GAAGA	2 cut(s)	386, 631
MluCI	AATT	6 cut(s)	47, 129, 414, 434, 489, 736
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	8 cut(s)	131, 230, 444, 499, 532, 571, 675, 724
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	2 cut(s)	162, 345
MspR9I	CCNGG	2 cut(s)	17, 346
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	7 cut(s)	98, 124, 485, 563, 636, 640, 724
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	3 cut(s)	84, 180, 586
NlaIII	CATG	8 cut(s)	10, 175, 364, 386, 425, 557, 656, 765
NlaIV	GGNNCC	3 cut(s)	21, 119, 177
NspI	RCATGY	3 cut(s)	10, 364, 557
PaeI	GCATGC	1 cut(s)	364
PagI	TCATGA	1 cut(s)	761
PceI	AGGCCT	1 cut(s)	240
PciI	ACATGT	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	758
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	580
PscI	ACATGT	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	21, 119, 177
PspPI	GGNCC	1 cut(s)	580
PspPPI	RGGWCCY	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	446
SalI	GTCGAC	1 cut(s)	705
SatI	GCNGC	1 cut(s)	757
Sau3AI	GATC	3 cut(s)	84, 180, 586
Sau96I	GGNCC	1 cut(s)	580
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	2 cut(s)	17, 346
SetI	ASST	9 cut(s)	73, 129, 140, 159, 391, 547, 585, 648, 686
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	63, 122
SmoI	CTYRAG	2 cut(s)	63, 122
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	6 cut(s)	47, 129, 414, 434, 489, 736
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	2 cut(s)	217, 479
SspI	AATATT	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	15, 344
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	3 cut(s)	208, 214, 711
TaqI	TCGA	2 cut(s)	314, 706
TasI	AATT	6 cut(s)	47, 129, 414, 434, 489, 736
TatI	WGTACW	1 cut(s)	43
TseI	GCWGC	1 cut(s)	756
TspDTI	ATGAA	6 cut(s)	122, 267, 393, 399, 407, 729
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	3 cut(s)	10, 364, 557
XmiI	GTMKAC	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.