FvH4_2g09570

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
8495523 .. 8498015
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09570.t1

Sequence Viewer

Length: 285 bp
ATGGGTTTCATGTGTCTCAAGAAGTTCACTATCCTTATTCTCCTGATTTCTGCATCATCACTTTTATCGGCCTCATCTGCAGCAGGTAGACAATCCAAGTTTGTCAATAAGTTGGCTAAAGAAGCAGTGGATGCAAATCCAGAGGAAGTACTAGGGAAGCCATTGAGCCACAAGGAAGCTGCCAGAATCCATGAAAGGCTTCTCAGGGTTAACACAAAAGATTACGGACGATACGATCCAGCACCTGCTCTTGTTAAGCCTCCTTTCAAGCTCATCCCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.33

Weight (kDa)

9.87

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013349)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 253
Acc36I ACCTGC 2 cut(s) 74, 253
AccI GTMKAC 1 cut(s) 88
AclWI GGATC 1 cut(s) 230
AfaI GTAC 1 cut(s) 150
AgsI TTSAA 1 cut(s) 268
AluBI AGCT 2 cut(s) 179, 271
AluI AGCT 2 cut(s) 179, 271
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 80, 179
Asp700I GAANNNNTTC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 92, 166
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 2 cut(s) 74, 253
BisI GCNGC 2 cut(s) 81, 180
BlsI GCNGC 2 cut(s) 82, 181
BmcAI AGTACT 1 cut(s) 150
BmsI GCATC 2 cut(s) 62, 121
BsaBI GATNNNNATC 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 135
BseGI GGATG 2 cut(s) 136, 273
BseJI GATNNNNATC 1 cut(s) 135
BseMII CTCAG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 92, 166
BshFI GGCC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 235
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 2 cut(s) 74, 253
BspPI GGATC 1 cut(s) 230
BssMI GATC 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 136, 273
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 3 cut(s) 77, 122, 131
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 92, 166
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 136, 273
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 2 cut(s) 74, 253
CaiI CAGNNNCTG 1 cut(s) 245
Csp6I GTAC 1 cut(s) 149
CviAII CATG 2 cut(s) 10, 191
CviJI RGCY 8 cut(s) 71, 116, 160, 168, 179, 199, 259, 271
CviKI_1 RGCY 8 cut(s) 71, 116, 160, 168, 179, 199, 259, 271
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
FaeI CATG 2 cut(s) 13, 194
FaiI YATR 2 cut(s) 11, 192
FatI CATG 2 cut(s) 9, 190
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 81, 180
FokI GGATG 2 cut(s) 143, 260
Fsp4HI GCNGC 2 cut(s) 81, 180
FspBI CTAG 1 cut(s) 152
GluI GCNGC 2 cut(s) 81, 180
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 2 cut(s) 13, 194
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 186
HpaI GTTAAC 1 cut(s) 211
Hpy166II GTNNAC 3 cut(s) 27, 89, 211
Hpy188III TCNNGA 3 cut(s) 19, 43, 140
Hpy8I GTNNAC 3 cut(s) 27, 89, 211
HpyCH4V TGCA 3 cut(s) 53, 80, 134
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 122, 131
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 2 cut(s) 13, 194
KspAI GTTAAC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 7 cut(s) 56, 69, 153, 190, 196, 252, 258
Lsp1109I GCAGC 2 cut(s) 92, 166
LweI GCATC 2 cut(s) 62, 121
MaeI CTAG 1 cut(s) 152
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MnlI CCTC 3 cut(s) 82, 136, 270
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 2 cut(s) 210, 255
MwoI GCNNNNNNNGC 3 cut(s) 77, 122, 131
NdeII GATC 1 cut(s) 235
NlaIII CATG 2 cut(s) 13, 194
PaqCI CACCTGC 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 82, 181
PstI CTGCAG 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 210, 255
SatI GCNGC 2 cut(s) 81, 180
Sau3AI GATC 1 cut(s) 235
ScaI AGTACT 1 cut(s) 150
SetI ASST 4 cut(s) 88, 181, 247, 273
SfaNI GCATC 2 cut(s) 62, 121
SfcI CTRYAG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SspMI CTAG 1 cut(s) 152
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 2 cut(s) 210, 255
Tru9I TTAA 2 cut(s) 210, 255
TscAI CASTG 1 cut(s) 132
TseI GCWGC 2 cut(s) 80, 179
TspDTI ATGAA 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.