Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

2639764 .. 2642361

Gene Structure 2598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0021100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGTTCCCCCCAATGATCCCCAAGCCCGGAGGCCGGAAGCCTAAGGCCCGTGCCTGCTACGATCCGAAGTTCGATCGCGCAACCTCCAAGACTCTCGGGCATTTCCACCTCTTCGGCGAGCGTCTCAAGGGCTCGCAGCCTTTCTCAACGATTCAACGCTCAGAAAGGCTGCGAGCCCTTGAGACGCTCGCCGAAGCGGTGGAAACGTCCGAGAGTCTTGGAGGTTGCGCGATCGAACTTCGGATCGTAGCAGGCACGGGCCTTAGGCTTCCGGCCTCCGGGCTTGGGGATCATTGGGGGGAACGCCATTGCTGGGTATTGCTTTCAGATTTGAGTGTTGAAGTGTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

118

Amino Acids

12.97

Weight (kDa)

8.96

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	81, 233
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	4 cut(s)	13, 59, 254, 300
AfiI	CCNNNNNNNGG	5 cut(s)	29, 36, 281, 288, 316
AgsI	TTSAA	2 cut(s)	158, 344
Alw26I	GTCTC	2 cut(s)	131, 179
AlwI	GGATC	4 cut(s)	13, 59, 254, 300
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	4 cut(s)	34, 48, 262, 276
ApeKI	GCWGC	2 cut(s)	139, 172
AspLEI	GCGC	2 cut(s)	83, 233
AspS9I	GGNCC	2 cut(s)	49, 262
AsuC2I	CCSGG	2 cut(s)	30, 283
AvaI	CYCGRG	1 cut(s)	98
AxyI	CCTNAGG	2 cut(s)	45, 266
BanII	GRGCYC	2 cut(s)	137, 181
BbvI	GCAGC	2 cut(s)	151, 159
BcnI	CCSGG	2 cut(s)	30, 283
BcoDI	GTCTC	2 cut(s)	131, 179
BisI	GCNGC	2 cut(s)	140, 173
BlsI	GCNGC	2 cut(s)	141, 174
Bme1390I	CCNGG	2 cut(s)	30, 283
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	49, 262
BmrFI	CCNGG	2 cut(s)	30, 283
BpuEI	CTTGAG	2 cut(s)	113, 203
BpuMI	CCSGG	2 cut(s)	30, 283
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 36, 281, 288, 316
Bse21I	CCTNAGG	2 cut(s)	45, 266
Bse3DI	GCAATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	5 cut(s)	29, 36, 281, 288, 316
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	151, 159
BseYI	CCCAGC	1 cut(s)	315
Bsh1236I	CGCG	2 cut(s)	81, 233
Bsh1285I	CGRYCG	2 cut(s)	79, 237
BshFI	GGCC	4 cut(s)	36, 50, 264, 278
BsiEI	CGRYCG	2 cut(s)	79, 237
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	30, 37, 275, 282
BslI	CCNNNNNNNGG	5 cut(s)	29, 36, 281, 288, 316
BsmAI	GTCTC	2 cut(s)	131, 179
BsmBI	CGTCTC	2 cut(s)	131, 179
BsnI	GGCC	4 cut(s)	36, 50, 264, 278
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	137, 181
Bsp143I	GATC	6 cut(s)	18, 64, 76, 234, 246, 292
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	4 cut(s)	36, 50, 264, 278
BspCNI	CTCAG	1 cut(s)	176
BspFNI	CGCG	2 cut(s)	81, 233
BspPI	GGATC	4 cut(s)	13, 59, 254, 300
BsrDI	GCAATG	1 cut(s)	310
BssMI	GATC	6 cut(s)	18, 64, 76, 234, 246, 292
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	6 cut(s)	58, 122, 137, 177, 192, 256
BstDEI	CTNAG	3 cut(s)	45, 163, 266
BstFNI	CGCG	2 cut(s)	81, 233
BstHHI	GCGC	2 cut(s)	83, 233
BstKTI	GATC	6 cut(s)	21, 67, 79, 237, 249, 295
BstMAI	GTCTC	2 cut(s)	131, 179
BstMBI	GATC	6 cut(s)	18, 64, 76, 234, 246, 292
BstMCI	CGRYCG	2 cut(s)	79, 237
BstSCI	CCNGG	2 cut(s)	28, 281
BstUI	CGCG	2 cut(s)	81, 233
BstV1I	GCAGC	2 cut(s)	151, 159
Bsu36I	CCTNAGG	2 cut(s)	45, 266
BsuRI	GGCC	4 cut(s)	36, 50, 264, 278
Cac8I	GCNNGC	6 cut(s)	58, 122, 137, 177, 192, 256
CfoI	GCGC	2 cut(s)	83, 233
Cfr13I	GGNCC	2 cut(s)	49, 262
CseI	GACGC	2 cut(s)	113, 196
DdeI	CTNAG	3 cut(s)	45, 163, 266
DpnI	GATC	6 cut(s)	20, 66, 78, 236, 248, 294
DpnII	GATC	6 cut(s)	18, 64, 76, 234, 246, 292
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco24I	GRGCYC	2 cut(s)	137, 181
Eco81I	CCTNAGG	2 cut(s)	45, 266
Eco88I	CYCGRG	1 cut(s)	98
EcoT38I	GRGCYC	2 cut(s)	137, 181
Esp3I	CGTCTC	2 cut(s)	131, 179
Fnu4HI	GCNGC	2 cut(s)	140, 173
FriOI	GRGCYC	2 cut(s)	137, 181
Fsp4HI	GCNGC	2 cut(s)	140, 173
GlaI	GCGC	2 cut(s)	82, 232
GluI	GCNGC	2 cut(s)	140, 173
GsaI	CCCAGC	1 cut(s)	319
HaeIII	GGCC	4 cut(s)	36, 50, 264, 278
HapII	CCGG	4 cut(s)	30, 37, 275, 282
HgaI	GACGC	2 cut(s)	113, 196
HhaI	GCGC	2 cut(s)	83, 233
Hin6I	GCGC	2 cut(s)	81, 231
HinP1I	GCGC	2 cut(s)	81, 231
HinfI	GANTC	3 cut(s)	94, 154, 217
HpaII	CCGG	4 cut(s)	30, 37, 275, 282
Hpy188I	TCNGA	5 cut(s)	69, 166, 214, 246, 331
HpyCH4IV	ACGT	1 cut(s)	209
HpyF3I	CTNAG	3 cut(s)	45, 163, 266
HpySE526I	ACGT	1 cut(s)	209
HspAI	GCGC	2 cut(s)	81, 231
Kzo9I	GATC	6 cut(s)	18, 64, 76, 234, 246, 292
LpnPI	CCDG	7 cut(s)	43, 50, 70, 240, 288, 295, 301
Lsp1109I	GCAGC	2 cut(s)	151, 159
MaeII	ACGT	1 cut(s)	209
MalI	GATC	6 cut(s)	20, 66, 78, 236, 248, 294
MboI	GATC	6 cut(s)	18, 64, 76, 234, 246, 292
MboII	GAAGA	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	137, 181
MlyI	GAGTC	2 cut(s)	88, 226
MnlI	CCTC	5 cut(s)	26, 97, 122, 218, 289
MspI	CCGG	4 cut(s)	30, 37, 275, 282
MspR9I	CCNGG	2 cut(s)	30, 283
MvnI	CGCG	2 cut(s)	81, 233
NciI	CCSGG	2 cut(s)	30, 283
NdeII	GATC	6 cut(s)	18, 64, 76, 234, 246, 292
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	141, 174
Ple19I	CGATCG	2 cut(s)	79, 237
PleI	GAGTC	2 cut(s)	88, 225
PpsI	GAGTC	2 cut(s)	88, 225
PspFI	CCCAGC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	49, 262
PvuI	CGATCG	2 cut(s)	79, 237
SatI	GCNGC	2 cut(s)	140, 173
Sau3AI	GATC	6 cut(s)	18, 64, 76, 234, 246, 292
Sau96I	GGNCC	2 cut(s)	49, 262
SchI	GAGTC	2 cut(s)	88, 226
ScrFI	CCNGG	2 cut(s)	30, 283
SduI	GDGCHC	2 cut(s)	137, 181
SetI	ASST	4 cut(s)	89, 114, 212, 229
SmlI	CTYRAG	2 cut(s)	128, 182
SmoI	CTYRAG	2 cut(s)	128, 182
SsiI	CCGC	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	28, 281
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	75, 237
TfiI	GAWTC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	139, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.