Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

17930014 .. 17942955

Gene Structure 12942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCATTCTTCACTGAGTCGACTCGTTGGTACTAGACTCGTTTCTGATGGTGTAAACCCAGTCCCTGGTAAAGGCATATTTCAAGACCCCGGACGACCGGTACAAGCTTCACTCAGAGAAGATGTGGCCGGCGAATCTGCTACACTATTCATACGCCAAGACAATCTCGCAGAGCCATTCAGACCAATTCATAAGCCCCAAGCTTTAGCATCTAACAATTGGCCTGAATACCTAAATTTGCTTGGAAGATCACCAAGGTCGCCATTGACAAAGTGTCTGGGAAGATCACCAAGGTCGGTAGGTCATTTTCCAGGTCCAGGGACTATGACACCATGGGACCCAGTGTTAAGTAAGTCCAGTGGTCCTGACAGGGAGTTGCAGAAGTGTAAGGAGGTTGTGCATTGCGTCACACTTCATGATATTGATGTCATCAACAGCAGAACACAAGGATTTCTGGCTCTCTTTACAGGAGATACTGATGAAATTCATTCAGAAGTGAGAGAACAGATTGACACACAGATTGGTGTAGATGCATCCTTGAGATATGCCATCCATCTCATAACAGCTGCTGCATTGTCATGCCAAAAGCGGAAGGGAAAGATTGTTGAGATGGATGATATTAACCATGTTTATCTGATGCTTGATGCAATCTTGAGAAGTCCCTCTGAACTAGAAAGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

227

Amino Acids

25.06

Weight (kDa)

6.71

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	122 - 174	2.5e-15	TIP49 P-loop domain
TIP49_C	PF17856	172 - 212	2.5e-11	TIP49 AAA-lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	1 cut(s)	589
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	2 cut(s)	235, 483
AfaI	GTAC	2 cut(s)	31, 102
AfiI	CCNNNNNNNGG	3 cut(s)	65, 71, 317
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	83
AhdI	GACNNNNNGTC	1 cut(s)	273
AjnI	CCWGG	3 cut(s)	64, 310, 316
AluBI	AGCT	3 cut(s)	107, 203, 566
AluI	AGCT	3 cut(s)	107, 203, 566
AlwNI	CAGNNNCTG	2 cut(s)	65, 569
AoxI	GGCC	2 cut(s)	126, 221
ApeKI	GCWGC	2 cut(s)	566, 569
ApoI	RAATTY	2 cut(s)	235, 483
AsiGI	ACCGGT	1 cut(s)	97
AspS9I	GGNCC	3 cut(s)	314, 337, 362
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	243, 279
AvaII	GGWCC	3 cut(s)	314, 337, 362
BbvI	GCAGC	2 cut(s)	553, 556
BccI	CCATC	4 cut(s)	41, 557, 561, 604
BciT130I	CCWGG	3 cut(s)	66, 312, 318
BcnI	CCSGG	1 cut(s)	90
BfaI	CTAG	2 cut(s)	33, 671
BisI	GCNGC	2 cut(s)	567, 570
BlsI	GCNGC	2 cut(s)	568, 571
Bme1390I	CCNGG	4 cut(s)	66, 90, 312, 318
Bme18I	GGWCC	3 cut(s)	314, 337, 362
BmeRI	GACNNNNNGTC	1 cut(s)	273
BmgT120I	GGNCC	3 cut(s)	314, 337, 362
BmiI	GGNNCC	2 cut(s)	338, 339
BmrFI	CCNGG	4 cut(s)	66, 90, 312, 318
BmrI	ACTGGG	2 cut(s)	53, 335
BmsI	GCATC	5 cut(s)	218, 520, 542, 627, 634
BmuI	ACTGGG	2 cut(s)	53, 335
BpuEI	CTTGAG	2 cut(s)	559, 673
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	6 cut(s)	64, 88, 254, 290, 317, 332
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 71, 317
Bse118I	RCCGGY	2 cut(s)	97, 128
Bse1I	ACTGG	3 cut(s)	59, 341, 357
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	3 cut(s)	66, 312, 318
BseDI	CCNNGG	6 cut(s)	64, 88, 254, 290, 317, 332
BseGI	GGATG	3 cut(s)	533, 549, 619
BseLI	CCNNNNNNNGG	3 cut(s)	65, 71, 317
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	5, 127
BseNI	ACTGG	3 cut(s)	59, 341, 357
BseXI	GCAGC	2 cut(s)	553, 556
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	128, 223
BshTI	ACCGGT	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	98
BsiSI	CCGG	3 cut(s)	90, 98, 129
BslFI	GGGAC	4 cut(s)	47, 334, 350, 645
BslI	CCNNNNNNNGG	3 cut(s)	65, 71, 317
BsmFI	GGGAC	4 cut(s)	47, 334, 350, 645
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	128, 223
Bsp143I	GATC	2 cut(s)	248, 284
Bsp19I	CCATGG	1 cut(s)	332
BspACI	CCGC	1 cut(s)	589
BspANI	GGCC	2 cut(s)	128, 223
BspCNI	CTCAG	2 cut(s)	6, 126
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	338, 339
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	2 cut(s)	97, 128
BsrI	ACTGG	3 cut(s)	59, 341, 357
BssAI	RCCGGY	2 cut(s)	97, 128
BssECI	CCNNGG	6 cut(s)	64, 88, 254, 290, 317, 332
BssMI	GATC	2 cut(s)	248, 284
BssT1I	CCWWGG	3 cut(s)	254, 290, 332
Bst2UI	CCWGG	3 cut(s)	66, 312, 318
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	14, 113
BstDSI	CCRYGG	1 cut(s)	332
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	533, 549, 619
BstKTI	GATC	2 cut(s)	251, 287
BstMBI	GATC	2 cut(s)	248, 284
BstMCI	CGRYCG	1 cut(s)	98
BstNI	CCWGG	3 cut(s)	66, 312, 318
BstSCI	CCNGG	4 cut(s)	64, 88, 310, 316
BstV1I	GCAGC	2 cut(s)	553, 556
BsuRI	GGCC	2 cut(s)	128, 223
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	533, 549, 619
BtsIMutI	CAGTG	3 cut(s)	11, 348, 364
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	2 cut(s)	65, 569
CciI	TCATGA	1 cut(s)	415
Cfr10I	RCCGGY	2 cut(s)	97, 128
Cfr13I	GGNCC	3 cut(s)	314, 337, 362
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	30, 101
CspAI	ACCGGT	1 cut(s)	97
CviAII	CATG	4 cut(s)	333, 416, 579, 626
CviJI	RGCY	8 cut(s)	107, 128, 175, 196, 203, 223, 458, 566
CviKI_1	RGCY	8 cut(s)	107, 128, 175, 196, 203, 223, 458, 566
CviQI	GTAC	2 cut(s)	30, 101
DdeI	CTNAG	2 cut(s)	14, 113
DpnI	GATC	2 cut(s)	250, 286
DpnII	GATC	2 cut(s)	248, 284
DriI	GACNNNNNGTC	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	126
Eam1105I	GACNNNNNGTC	1 cut(s)	273
Eco130I	CCWWGG	3 cut(s)	254, 290, 332
Eco47I	GGWCC	3 cut(s)	314, 337, 362
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	3 cut(s)	64, 310, 316
EcoT14I	CCWWGG	3 cut(s)	254, 290, 332
EcoT22I	ATGCAT	2 cut(s)	6, 535
ErhI	CCWWGG	3 cut(s)	254, 290, 332
FaeI	CATG	4 cut(s)	336, 419, 582, 629
FaqI	GGGAC	4 cut(s)	47, 334, 350, 645
FatI	CATG	4 cut(s)	332, 415, 578, 625
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	567, 570
FokI	GGATG	3 cut(s)	520, 536, 626
Fsp4HI	GCNGC	2 cut(s)	567, 570
FspBI	CTAG	2 cut(s)	33, 671
GluI	GCNGC	2 cut(s)	567, 570
HaeIII	GGCC	2 cut(s)	128, 223
HapII	CCGG	3 cut(s)	90, 98, 129
HgaI	GACGC	1 cut(s)	394
Hin1II	CATG	4 cut(s)	336, 419, 582, 629
HincII	GTYRAC	1 cut(s)	20
HindII	GTYRAC	1 cut(s)	20
HindIII	AAGCTT	2 cut(s)	105, 201
HinfI	GANTC	4 cut(s)	16, 21, 36, 134
HpaII	CCGG	3 cut(s)	90, 98, 129
HphI	GGTGA	2 cut(s)	243, 279
Hpy166II	GTNNAC	2 cut(s)	20, 55
Hpy188I	TCNGA	6 cut(s)	46, 116, 182, 493, 636, 667
Hpy188III	TCNNGA	4 cut(s)	83, 365, 416, 652
Hpy8I	GTNNAC	2 cut(s)	20, 55
HpyAV	CCTTC	1 cut(s)	586
HpyCH4V	TGCA	6 cut(s)	4, 379, 400, 533, 572, 647
HpyF3I	CTNAG	2 cut(s)	14, 113
Hsp92II	CATG	4 cut(s)	336, 419, 582, 629
KflI	GGGWCCC	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	248, 284
Lsp1109I	GCAGC	2 cut(s)	553, 556
LweI	GCATC	5 cut(s)	218, 520, 542, 627, 634
MaeI	CTAG	2 cut(s)	33, 671
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	250, 286
MboI	GATC	2 cut(s)	248, 284
MboII	GAAGA	3 cut(s)	131, 258, 294
MfeI	CAATTG	1 cut(s)	217
MluCI	AATT	4 cut(s)	186, 217, 235, 483
MlyI	GAGTC	3 cut(s)	15, 25, 30
MnlI	CCTC	2 cut(s)	385, 673
Mph1103I	ATGCAT	2 cut(s)	6, 535
MroNI	GCCGGC	1 cut(s)	128
MseI	TTAA	2 cut(s)	347, 621
MslI	CAYNNNNRTG	1 cut(s)	577
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	3 cut(s)	90, 98, 129
MspR9I	CCNGG	4 cut(s)	66, 90, 312, 318
MunI	CAATTG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	3 cut(s)	66, 312, 318
NaeI	GCCGGC	1 cut(s)	130
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	332
NdeII	GATC	2 cut(s)	248, 284
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	4 cut(s)	336, 419, 582, 629
NlaIV	GGNNCC	2 cut(s)	338, 339
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	2 cut(s)	6, 535
PagI	TCATGA	1 cut(s)	415
PctI	GAATGC	1 cut(s)	4
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	568, 571
PleI	GAGTC	3 cut(s)	15, 24, 30
PpsI	GAGTC	3 cut(s)	15, 24, 30
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	3 cut(s)	64, 310, 316
PspGI	CCWGG	3 cut(s)	64, 310, 316
PspN4I	GGNNCC	2 cut(s)	338, 339
PspPI	GGNCC	3 cut(s)	314, 337, 362
PspPPI	RGGWCCY	1 cut(s)	337
PstNI	CAGNNNCTG	2 cut(s)	65, 569
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	31, 102
RsaNI	GTAC	2 cut(s)	30, 101
RseI	CAYNNNNRTG	1 cut(s)	577
SalI	GTCGAC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	347, 621
SatI	GCNGC	2 cut(s)	567, 570
Sau3AI	GATC	2 cut(s)	248, 284
Sau96I	GGNCC	3 cut(s)	314, 337, 362
SchI	GAGTC	3 cut(s)	15, 25, 30
ScrFI	CCNGG	4 cut(s)	66, 90, 312, 318
SetI	ASST	9 cut(s)	109, 205, 234, 260, 296, 304, 316, 396, 568
SfaNI	GCATC	5 cut(s)	218, 520, 542, 627, 634
SinI	GGWCC	3 cut(s)	314, 337, 362
SmiMI	CAYNNNNRTG	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	538, 652
SmoI	CTYRAG	2 cut(s)	538, 652
Sse9I	AATT	4 cut(s)	186, 217, 235, 483
SsiI	CCGC	1 cut(s)	589
SspMI	CTAG	2 cut(s)	33, 671
StyD4I	CCNGG	4 cut(s)	64, 88, 310, 316
StyI	CCWWGG	3 cut(s)	254, 290, 332
TaqI	TCGA	1 cut(s)	19
TasI	AATT	4 cut(s)	186, 217, 235, 483
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	347, 621
Tru9I	TTAA	2 cut(s)	347, 621
TscAI	CASTG	3 cut(s)	18, 348, 364
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	566, 569
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	139, 179, 404, 476, 495
TspRI	CASTG	3 cut(s)	18, 348, 364
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	3 cut(s)	314, 337, 362
XagI	CCTNNNNNAGG	1 cut(s)	69
XapI	RAATTY	2 cut(s)	235, 483
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	2 cut(s)	33, 671
Zsp2I	ATGCAT	2 cut(s)	6, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.