Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

22814007 .. 22820523

Gene Structure 6517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG142700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAAATCATTGAAGGCGAGGTTGTTGAGGTACAGATTGATCGGCGTGCGGTGGTTGGAGCAGCTTCAAAGACTGGGAAAATGACTCTGAAGACAACTGAGATGGAGACGGTTTATGACTTGGCTGCCAAGATGATTGAAGCGTCGGGGAAGGAGAAGGTGCAGAGTGGAGATGTGGTTGCCATTGACAAAGCGTCCGGGAAGATCACCAAAGGAGATACTGGTGAAATTCGTTCAGAAGTGAGAGAACAGATTGACACAAAGGTGGCAGAGAGGAGGGAGGACGGGAAGGCAGAAATTGTGCTAGGTGTTCTCTTTATTGATGAGGTGCATATGCTTGACATTGAGTGCTTTTCATTTCTGAATCGTGCTTTGCAGAATGAGATGGCTCCAATTTTAGTCATTGCTACAAACAGAGGGATCACTACGATCAGAGGCACAAATATAAATCCCCCCATGGGATTCCAATTGATCACCTGCTCATTATCACCACTCAGCCTTATACAGAGGGTGAAATTCACAAGATTCTTGACCTTAGATACCAGGAAGAAGAAGTTGAGATGTCTGAAGAGAGGCAAAGCATTTGTTGACCAAGATTGGTGTAGATACATCCTTGAGATATATGCCATCCATCTCAAAACAGCTGCTGCATTGGCATGCCAAAAACGGAAGGGAAAGACTGTTGAGATGGAGGATTTTAACCATGTTTATCTGTTTTTGAATGTGAAGGGATCAACACAATACTTGATGGAGTATCAGAATCAGTCCATGTTTAATAATGCTGATGAAGATGATACCAATGCCATGCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

271

Amino Acids

30.53

Weight (kDa)

6.85

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	2 - 71	4.8e-14	TIP49 P-loop domain
TIP49	PF06068	71 - 155	1.1e-37	TIP49 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	428, 739
AcsI	RAATTY	2 cut(s)	228, 515
AcuI	CTGAAG	2 cut(s)	110, 587
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	4 cut(s)	14, 69, 140, 721
AhdI	GACNNNNNGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	542
AleI	CACNNNNGTG	1 cut(s)	263
AluBI	AGCT	2 cut(s)	65, 644
AluI	AGCT	2 cut(s)	65, 644
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	428, 739
AlwNI	CAGNNNCTG	1 cut(s)	647
ApeKI	GCWGC	4 cut(s)	62, 125, 644, 647
ApoI	RAATTY	2 cut(s)	228, 515
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	5 cut(s)	199, 236, 466, 480, 523
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	4 cut(s)	74, 112, 631, 634
BccI	CCATC	6 cut(s)	97, 379, 635, 639, 682, 742
BciT130I	CCWGG	1 cut(s)	544
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	485
BisI	GCNGC	4 cut(s)	63, 126, 645, 648
BlsI	GCNGC	4 cut(s)	64, 127, 646, 649
Bme1390I	CCNGG	2 cut(s)	199, 544
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	199, 544
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	2 cut(s)	79, 226
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	2 cut(s)	609, 627
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	90, 508
BseNI	ACTGG	2 cut(s)	79, 226
BseRI	GAGGAG	1 cut(s)	289
BseXI	GCAGC	4 cut(s)	74, 112, 631, 634
BsgI	GTGCAG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
Bsp143I	GATC	6 cut(s)	40, 204, 420, 429, 471, 731
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	91, 507
BspLI	GGNNCC	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	428, 739
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	2 cut(s)	79, 226
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	6 cut(s)	40, 204, 420, 429, 471, 731
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	2 cut(s)	112, 682
Bst6I	CTCTTC	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	48, 658
BstDEI	CTNAG	3 cut(s)	99, 494, 535
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	609, 627
BstKTI	GATC	6 cut(s)	43, 207, 423, 432, 474, 734
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	6 cut(s)	40, 204, 420, 429, 471, 731
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	197, 542
BstV1I	GCAGC	4 cut(s)	74, 112, 631, 634
BstV2I	GAAGAC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	609, 627
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	48, 658
CaiI	CAGNNNCTG	1 cut(s)	647
CseI	GACGC	2 cut(s)	132, 183
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	5 cut(s)	457, 657, 704, 769, 805
CviJI	RGCY	5 cut(s)	65, 125, 389, 498, 644
CviKI_1	RGCY	5 cut(s)	65, 125, 389, 498, 644
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	3 cut(s)	99, 494, 535
DpnI	GATC	6 cut(s)	42, 206, 422, 431, 473, 733
DpnII	GATC	6 cut(s)	40, 204, 420, 429, 471, 731
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	563
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	110, 587
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	5 cut(s)	460, 660, 707, 772, 808
FatI	CATG	5 cut(s)	456, 656, 703, 768, 804
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	4 cut(s)	63, 126, 645, 648
FokI	GGATG	2 cut(s)	596, 614
Fsp4HI	GCNGC	4 cut(s)	63, 126, 645, 648
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	4 cut(s)	63, 126, 645, 648
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	2 cut(s)	132, 183
Hin1II	CATG	5 cut(s)	460, 660, 707, 772, 808
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	5 cut(s)	85, 364, 462, 525, 760
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	5 cut(s)	199, 236, 466, 480, 523
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	6 cut(s)	90, 238, 363, 434, 567, 759
Hpy188III	TCNNGA	2 cut(s)	529, 813
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	6 cut(s)	8, 145, 151, 283, 664, 721
HpyCH4III	ACNGT	2 cut(s)	112, 682
HpyCH4V	TGCA	5 cut(s)	163, 331, 376, 650, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	3 cut(s)	99, 494, 535
Hsp92II	CATG	5 cut(s)	460, 660, 707, 772, 808
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	6 cut(s)	40, 204, 420, 429, 471, 731
LmnI	GCTCC	2 cut(s)	59, 394
LpnPI	CCDG	6 cut(s)	60, 207, 211, 490, 529, 556
Lsp1109I	GCAGC	4 cut(s)	74, 112, 631, 634
MaeI	CTAG	1 cut(s)	305
MalI	GATC	6 cut(s)	42, 206, 422, 431, 473, 733
MboI	GATC	6 cut(s)	40, 204, 420, 429, 471, 731
MboII	GAAGA	6 cut(s)	103, 214, 559, 562, 580, 800
MfeI	CAATTG	1 cut(s)	467
MluCI	AATT	5 cut(s)	228, 297, 393, 467, 515
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	37
MseI	TTAA	2 cut(s)	699, 774
MslI	CAYNNNNRTG	2 cut(s)	263, 655
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	199, 544
MunI	CAATTG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	1 cut(s)	653
NciI	CCSGG	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	456
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	6 cut(s)	40, 204, 420, 429, 471, 731
NlaIII	CATG	5 cut(s)	460, 660, 707, 772, 808
NlaIV	GGNNCC	1 cut(s)	390
NspI	RCATGY	1 cut(s)	660
OliI	CACNNNNGTG	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	660
PaqCI	CACCTGC	1 cut(s)	485
PfeI	GAWTC	4 cut(s)	364, 462, 525, 760
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	64, 127, 646, 649
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	2 cut(s)	263, 655
SaqAI	TTAA	2 cut(s)	699, 774
SatI	GCNGC	4 cut(s)	63, 126, 645, 648
Sau3AI	GATC	6 cut(s)	40, 204, 420, 429, 471, 731
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	199, 544
SmiMI	CAYNNNNRTG	2 cut(s)	263, 655
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	5 cut(s)	228, 297, 393, 467, 515
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	197, 542
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	112, 682
TasI	AATT	5 cut(s)	228, 297, 393, 467, 515
TfiI	GAWTC	4 cut(s)	364, 462, 525, 760
Tru1I	TTAA	2 cut(s)	699, 774
Tru9I	TTAA	2 cut(s)	699, 774
TseI	GCWGC	4 cut(s)	62, 125, 644, 647
TspDTI	ATGAA	2 cut(s)	345, 801
TspGWI	ACGGA	1 cut(s)	682
XapI	RAATTY	2 cut(s)	228, 515
XceI	RCATGY	1 cut(s)	660
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.