Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

17849215 .. 17861795

Gene Structure 12581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGGAAGATCTTGGTGATGATTTAGAAAAAGTGGTGTTTATGCATTCTTCACTGAGTCGACTCGTTGGTACTAGACTCGTTTCTGATGGTGTAAACCCAGTCCCTGGTAAAGGCATATTTCAAGACCCCGGACGACCGGTACAAGCTTCACTCAGAGAAGATGTGGCCGGCGAATCTGCTACACTATTCATACGCCAAGACAATCTCGCAGAGCCATTCAGACCAATTCATAAGCCCCAAGCTTTAGCATCTAACAATTGGCCTGAATACCTAAATTTGCTTGGAAGATCACCAAGGTCGCCATTGACAAAGTGTCTGGGAAGATCACCAAGGTCGGTAGGTCATTTTCCAGGTCCAGGGACTATGACACCATGGGACCCAGTGTTAAGTAAGTCCAGTGGTCCTGACAGGGAGTTGCAGAAGTGTAAGGAGGTTGTGCATTGCGTCACACTTCATGATATTGATGTCATCAACAGCAGATTATATCTAACCCTTTGGCATATGAGGTGCATATGCTTGACATTGAGTGCTTTTCATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

181

Amino Acids

20.17

Weight (kDa)

7.04

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	2 cut(s)	73, 144
AfiI	CCNNNNNNNGG	3 cut(s)	107, 113, 359
AgeI	ACCGGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	125
AhdI	GACNNNNNGTC	1 cut(s)	315
AjnI	CCWGG	3 cut(s)	106, 352, 358
AluBI	AGCT	2 cut(s)	149, 245
AluI	AGCT	2 cut(s)	149, 245
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	168, 263
ApoI	RAATTY	1 cut(s)	277
AsiGI	ACCGGT	1 cut(s)	139
AspS9I	GGNCC	3 cut(s)	356, 379, 404
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	29, 285, 321
AvaII	GGWCC	3 cut(s)	356, 379, 404
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	3 cut(s)	108, 354, 360
BcnI	CCSGG	1 cut(s)	132
BfaI	CTAG	1 cut(s)	75
BglII	AGATCT	1 cut(s)	10
Bme1390I	CCNGG	4 cut(s)	108, 132, 354, 360
Bme18I	GGWCC	3 cut(s)	356, 379, 404
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	356, 379, 404
BmiI	GGNNCC	2 cut(s)	380, 381
BmrFI	CCNGG	4 cut(s)	108, 132, 354, 360
BmrI	ACTGGG	2 cut(s)	95, 377
BmsI	GCATC	1 cut(s)	260
BmuI	ACTGGG	2 cut(s)	95, 377
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	6 cut(s)	106, 130, 296, 332, 359, 374
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 113, 359
Bse118I	RCCGGY	2 cut(s)	139, 170
Bse1I	ACTGG	3 cut(s)	101, 383, 399
Bse3DI	GCAATG	1 cut(s)	442
BseBI	CCWGG	3 cut(s)	108, 354, 360
BseDI	CCNNGG	6 cut(s)	106, 130, 296, 332, 359, 374
BseLI	CCNNNNNNNGG	3 cut(s)	107, 113, 359
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	47, 169
BseNI	ACTGG	3 cut(s)	101, 383, 399
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	170, 265
BshTI	ACCGGT	1 cut(s)	139
BsiEI	CGRYCG	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	132, 140, 171
BslFI	GGGAC	3 cut(s)	89, 376, 392
BslI	CCNNNNNNNGG	3 cut(s)	107, 113, 359
BsmFI	GGGAC	3 cut(s)	89, 376, 392
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	170, 265
Bsp143I	GATC	3 cut(s)	10, 290, 326
Bsp19I	CCATGG	1 cut(s)	374
BspANI	GGCC	2 cut(s)	170, 265
BspCNI	CTCAG	2 cut(s)	48, 168
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	380, 381
BsrDI	GCAATG	1 cut(s)	442
BsrFI	RCCGGY	2 cut(s)	139, 170
BsrI	ACTGG	3 cut(s)	101, 383, 399
BssAI	RCCGGY	2 cut(s)	139, 170
BssECI	CCNNGG	6 cut(s)	106, 130, 296, 332, 359, 374
BssMI	GATC	3 cut(s)	10, 290, 326
BssT1I	CCWWGG	3 cut(s)	296, 332, 374
Bst2UI	CCWGG	3 cut(s)	108, 354, 360
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	56, 155
BstDSI	CCRYGG	1 cut(s)	374
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstKTI	GATC	3 cut(s)	13, 293, 329
BstMBI	GATC	3 cut(s)	10, 290, 326
BstMCI	CGRYCG	1 cut(s)	140
BstNI	CCWGG	3 cut(s)	108, 354, 360
BstSCI	CCNGG	4 cut(s)	106, 130, 352, 358
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	170, 265
BtgI	CCRYGG	1 cut(s)	374
BtsIMutI	CAGTG	3 cut(s)	53, 390, 406
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	107
CciI	TCATGA	1 cut(s)	457
Cfr10I	RCCGGY	2 cut(s)	139, 170
Cfr13I	GGNCC	3 cut(s)	356, 379, 404
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	72, 143
CspAI	ACCGGT	1 cut(s)	139
CviAII	CATG	2 cut(s)	375, 458
CviJI	RGCY	6 cut(s)	149, 170, 217, 238, 245, 265
CviKI_1	RGCY	6 cut(s)	149, 170, 217, 238, 245, 265
CviQI	GTAC	2 cut(s)	72, 143
DdeI	CTNAG	2 cut(s)	56, 155
DpnI	GATC	3 cut(s)	12, 292, 328
DpnII	GATC	3 cut(s)	10, 290, 326
DriI	GACNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	168
Eam1105I	GACNNNNNGTC	1 cut(s)	315
Eco130I	CCWWGG	3 cut(s)	296, 332, 374
Eco47I	GGWCC	3 cut(s)	356, 379, 404
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	3 cut(s)	106, 352, 358
EcoT14I	CCWWGG	3 cut(s)	296, 332, 374
EcoT22I	ATGCAT	1 cut(s)	48
ErhI	CCWWGG	3 cut(s)	296, 332, 374
FaeI	CATG	2 cut(s)	378, 461
FaqI	GGGAC	3 cut(s)	89, 376, 392
FatI	CATG	2 cut(s)	374, 457
FauNDI	CATATG	2 cut(s)	504, 515
FblI	GTMKAC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	170, 265
HapII	CCGG	3 cut(s)	132, 140, 171
HgaI	GACGC	1 cut(s)	436
Hin1II	CATG	2 cut(s)	378, 461
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HindIII	AAGCTT	2 cut(s)	147, 243
HinfI	GANTC	4 cut(s)	58, 63, 78, 176
HpaII	CCGG	3 cut(s)	132, 140, 171
HphI	GGTGA	3 cut(s)	29, 285, 321
Hpy166II	GTNNAC	2 cut(s)	62, 97
Hpy188I	TCNGA	3 cut(s)	88, 158, 224
Hpy188III	TCNNGA	3 cut(s)	125, 407, 458
Hpy8I	GTNNAC	2 cut(s)	62, 97
HpyCH4V	TGCA	4 cut(s)	46, 421, 442, 513
HpyF3I	CTNAG	2 cut(s)	56, 155
Hsp92II	CATG	2 cut(s)	378, 461
KflI	GGGWCCC	1 cut(s)	379
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	10, 290, 326
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	3 cut(s)	12, 292, 328
MboI	GATC	3 cut(s)	10, 290, 326
MboII	GAAGA	5 cut(s)	20, 42, 173, 300, 336
MfeI	CAATTG	1 cut(s)	259
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	3 cut(s)	228, 259, 277
MlyI	GAGTC	3 cut(s)	57, 67, 72
MnlI	CCTC	2 cut(s)	427, 501
Mph1103I	ATGCAT	1 cut(s)	48
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	1 cut(s)	389
MspI	CCGG	3 cut(s)	132, 140, 171
MspR9I	CCNGG	4 cut(s)	108, 132, 354, 360
MunI	CAATTG	1 cut(s)	259
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	3 cut(s)	108, 354, 360
NaeI	GCCGGC	1 cut(s)	172
NciI	CCSGG	1 cut(s)	132
NcoI	CCATGG	1 cut(s)	374
NdeI	CATATG	2 cut(s)	504, 515
NdeII	GATC	3 cut(s)	10, 290, 326
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	378, 461
NlaIV	GGNNCC	2 cut(s)	380, 381
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	48
PagI	TCATGA	1 cut(s)	457
PctI	GAATGC	1 cut(s)	46
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	107
PinAI	ACCGGT	1 cut(s)	139
PleI	GAGTC	3 cut(s)	57, 66, 72
PpsI	GAGTC	3 cut(s)	57, 66, 72
PpuMI	RGGWCCY	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	3 cut(s)	106, 352, 358
PspGI	CCWGG	3 cut(s)	106, 352, 358
PspN4I	GGNNCC	2 cut(s)	380, 381
PspPI	GGNCC	3 cut(s)	356, 379, 404
PspPPI	RGGWCCY	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	2 cut(s)	73, 144
RsaNI	GTAC	2 cut(s)	72, 143
SalI	GTCGAC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	3 cut(s)	10, 290, 326
Sau96I	GGNCC	3 cut(s)	356, 379, 404
SchI	GAGTC	3 cut(s)	57, 67, 72
ScrFI	CCNGG	4 cut(s)	108, 132, 354, 360
SetI	ASST	9 cut(s)	151, 247, 276, 302, 338, 346, 358, 438, 512
SfaNI	GCATC	1 cut(s)	260
SinI	GGWCC	3 cut(s)	356, 379, 404
Sse9I	AATT	3 cut(s)	228, 259, 277
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	4 cut(s)	106, 130, 352, 358
StyI	CCWWGG	3 cut(s)	296, 332, 374
TaqI	TCGA	1 cut(s)	61
TasI	AATT	3 cut(s)	228, 259, 277
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	3 cut(s)	60, 390, 406
TseFI	GTSAC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	4 cut(s)	181, 221, 446, 527
TspRI	CASTG	3 cut(s)	60, 390, 406
Van91I	CCANNNNNTGG	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	356, 379, 404
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.