Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

22463672 .. 22476029

Gene Structure 12358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G012340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1761 bp

ATGCGGAGAACTGCCTCTTCTTGTTATTGCAACAACACTAGAGGTATGCCTCGTCTTCAGTCTACTCTTGTTTCCTTCAACCATTACTCCTCTGCACTTTTTCATTCCCAAGCTTCAAAGCCTAGGAACACCCAGATTGTAAGAGACCCACCCAAAGTCACTAGTCTCCAGGATGGTTTAAGCTTGTTCAATACTATGCTTCAAATGCGTCCTCTGCCTTCTATTGTCTGTTTCAATAAAATCTTGGGTCAAATTGCTCAATTGAAACATCATTCGGCACCCATCTCTTTGTTTCACCAAATGTGTCTGCTGCGAGTTGTTCCTGATGTGTATACTTTGAACATCATGATCAACTGCTTTTGTCATTTGAACCAAATGGGATTCAGTTTGTCTGTGTTGGGAAAGTTCTTCAAATTTGGTTATGAACCAGATGCTACCACCCTCAACACTCTTATCAAGGGTTTTTTCCTTGAGAGTAAAGTCTCTGAGGCAGCAGCACTTTTCGGCAAAATGCTGCTTCAAGGTTGTAAGCCGAATGAGTTTACTTTTGGAACGCTGATAAAGGGCTATTGCATGATGGGAAATAATACTGCAGCTATTCAATTGCTTAGAAAGATGGAACAACATTCTCGAGATTGTAAGCCTAATGGTATTGCCCCTGACGTCATTACTTATACCTCTTTGATTCATGGCGTTTGCAAATTAGGCCAGTGGAAAGAAGCTACGAGATTGTTGAATGAGATGATCAGTAAAGATATCTTCCCAAATTTAGTAACCTTCACTATCCTGGTCGATACACTTTGTAAGGAGGGGATGGTTGTGGAAGCACAAAGTGTGCTTGAAATGATGATTCAAAGAGGTATCAAACCTGATACAGTCACCTACAGTTCACTTATGGATGGCTACTGTCTACGAGGAGAAATGGAGAAAGCTAAAGAGGTTTTTGATCTTATGATTAGCAAAGGCTCCGGTGTTGATGTTCATAGTTATAACATACTGATGAATGGATATTGTAAGCATAAACAGATAGATGATGCCACCAGGGTTTTTCAGGAAATGTCTGATAGTGGACTGCTTCCAAATACCATTACATATACTGCTCTTATGGATGGTTATTGCAAAGTAGGAAGAATACAAGATGCACAGAAATTGTTCAGTAAGATGCAAGCTTGTGGCCAGCTTCCAAATATTCAAACTTATGCTGTTTTACTGGATGGCCTGTGTAAAAACCAACAACTTGCAATGGCATTGGAGTTGTTTAGAGAGATGGAATGCATGAAGCTGGATTTGGATATAGTAATTTACGGTATTCTTATTGAAGGTTTGTGTATAGCTGGAAAAATTGCATCTGCAAGGGACCATTTTTACGGTTTATCATCAAAAGGACTTGAACCTGATGCAAGGACGTACAATATAATGATCAAGGGACTTTGTGACGGAGGCTTAATAAATGAAGTGGAAAAGTTGCTTAGAGAAATGGAAGATAAATGCCATTCTCCAAATGATTGCACATATAACACAATTATCCGAGGGTTTCTCAATAATGACGAGACAGTAAAGGCACGTGCTCCTGATGATTGCACATATAACACAATTATCCGAGGGTTTCTCAATAATGACGAGACAGTAAAGGCAGTGGGACTTGTTCACGAAATGACGGACAGGGGTTTCTCTGCAGATGCATGGACGGTGGAATTAATCATTGGTTTATTGTCTAAAGAAAAAGTAGATCCTGCTTTGTTGTCATGGATAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

586

Amino Acids

65.66

Weight (kDa)

7.13

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	73 - 122	1.4e-08	PPR repeat family
PPR_1	PF12854	140 - 171	3.3e-06	PPR repeat
PPR_2	PF13041	143 - 191	1e-12	PPR repeat family
PPR_long	PF17177	162 - 300	3e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	175 - 207	9.6e-11	PPR repeat
PPR_3	PF13812	211 - 267	1.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	216 - 248	3.4e-12	PPR repeat
PPR_2	PF13041	220 - 269	3.7e-17	PPR repeat family
PPR	PF01535	223 - 253	1.4e-07	PPR repeat
PPR_1	PF12854	251 - 283	1.5e-09	PPR repeat
PPR	PF01535	258 - 288	8.6e-06	PPR repeat
PPR_2	PF13041	266 - 303	1.9e-10	PPR repeat family
PPR_3	PF13812	278 - 337	3.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	286 - 318	8.9e-12	PPR repeat
PPR_2	PF13041	292 - 336	1.1e-10	PPR repeat family
PPR	PF01535	293 - 322	9.8e-09	PPR repeat
PPR_long	PF17177	307 - 431	2.9e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	311 - 423	1.7e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	325 - 354	6e-09	PPR repeat
PPR_2	PF13041	326 - 374	7.6e-19	PPR repeat family
PPR	PF01535	329 - 358	3.8e-08	PPR repeat
PPR_3	PF13812	348 - 405	2.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	357 - 389	4.9e-12	PPR repeat
PPR_2	PF13041	360 - 409	2.2e-17	PPR repeat family
PPR	PF01535	363 - 392	5.4e-08	PPR repeat
PPR_1	PF12854	392 - 424	6.4e-07	PPR repeat
PPR_2	PF13041	403 - 443	9e-08	PPR repeat family
PPR_2	PF13041	431 - 479	1.3e-11	PPR repeat family
PPR_1	PF12854	461 - 494	6.5e-11	PPR repeat
PPR	PF01535	469 - 496	2.5e-06	PPR repeat
PPR_2	PF13041	478 - 513	8.9e-06	PPR repeat family
PPR_2	PF13041	524 - 569	2.9e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	990
AatII	GACGTC	1 cut(s)	666
AccB1I	GGYRCC	1 cut(s)	277
AccI	GTMKAC	3 cut(s)	62, 332, 910
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	1724
AcoI	YGGCCR	1 cut(s)	1174
AcsI	RAATTY	2 cut(s)	413, 766
AcuI	CTGAAG	1 cut(s)	41
AcvI	CACGTG	1 cut(s)	1565
AcyI	GRCGYC	1 cut(s)	663
AdeI	CACNNNGTG	1 cut(s)	833
AfaI	GTAC	1 cut(s)	1409
AhlI	ACTAGT	1 cut(s)	161
AjnI	CCWGG	3 cut(s)	168, 786, 1040
AjuI	GAANNNNNNNTTGG	4 cut(s)	1271, 1303, 1686, 1718
AluBI	AGCT	9 cut(s)	113, 183, 596, 722, 932, 1169, 1180, 1282, 1334
AluI	AGCT	9 cut(s)	113, 183, 596, 722, 932, 1169, 1180, 1282, 1334
Alw21I	GWGCWC	1 cut(s)	1570
Alw26I	GTCTC	5 cut(s)	138, 170, 487, 1544, 1616
AlwI	GGATC	1 cut(s)	1724
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	3 cut(s)	706, 1174, 1216
ApeKI	GCWGC	5 cut(s)	310, 491, 494, 514, 593
ApoI	RAATTY	2 cut(s)	413, 766
AseI	ATTAAT	1 cut(s)	1697
Asp700I	GAANNNNTTC	1 cut(s)	1151
AspA2I	CCTAGG	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	1357
AsuHPI	GGTGA	2 cut(s)	287, 871
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	1357
AvrII	CCTAGG	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	1176
BanI	GGYRCC	1 cut(s)	277
BbrPI	CACGTG	1 cut(s)	1565
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	1570
BbvI	GCAGC	5 cut(s)	297, 501, 503, 506, 605
BccI	CCATC	9 cut(s)	167, 290, 571, 610, 808, 893, 1103, 1208, 1261
BciT130I	CCWGG	3 cut(s)	170, 788, 1042
BclI	TGATCA	3 cut(s)	348, 744, 1419
BcoDI	GTCTC	5 cut(s)	138, 170, 487, 1544, 1616
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	3 cut(s)	39, 123, 162
BfmI	CTRYAG	3 cut(s)	591, 883, 1674
BisI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
BlnI	CCTAGG	1 cut(s)	122
BlsI	GCNGC	5 cut(s)	312, 493, 496, 516, 595
Bme1390I	CCNGG	3 cut(s)	170, 788, 1042
Bme18I	GGWCC	1 cut(s)	1357
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	1357
BmiI	GGNNCC	3 cut(s)	279, 967, 1358
BmrFI	CCNGG	3 cut(s)	170, 788, 1042
BmsI	GCATC	7 cut(s)	421, 1024, 1129, 1152, 1355, 1387, 1669
BpiI	GAAGAC	1 cut(s)	47
BplI	GAGNNNNNCTC	4 cut(s)	1521, 1553, 1593, 1625
BpmI	CTGGAG	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	491
BsaAI	YACGTR	1 cut(s)	1565
BsaHI	GRCGYC	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	122, 1041, 1528, 1600
BsaWI	WCCGGW	1 cut(s)	968
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse1I	ACTGG	2 cut(s)	709, 1215
Bse3DI	GCAATG	1 cut(s)	1248
BseBI	CCWGG	3 cut(s)	170, 788, 1042
BseDI	CCNNGG	4 cut(s)	122, 1041, 1528, 1600
BseGI	GGATG	5 cut(s)	178, 819, 904, 1114, 1219
BseMI	GCAATG	1 cut(s)	1248
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	709, 1215
BseRI	GAGGAG	2 cut(s)	79, 930
BseXI	GCAGC	5 cut(s)	297, 501, 503, 506, 605
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	708, 1176, 1218
BshNI	GGYRCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	1570
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	969
BslFI	GGGAC	3 cut(s)	1370, 1440, 1653
BsmAI	GTCTC	5 cut(s)	138, 170, 487, 1544, 1616
BsmFI	GGGAC	3 cut(s)	1370, 1440, 1653
BsmI	GAATGC	1 cut(s)	1277
BsnI	GGCC	3 cut(s)	708, 1176, 1218
Bso31I	GGTCTC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	630
Bsp1286I	GDGCHC	1 cut(s)	1570
Bsp143I	GATC	5 cut(s)	348, 744, 946, 1419, 1729
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	3 cut(s)	708, 1176, 1218
BspCNI	CTCAG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	279, 967, 1358
BspMAI	CTGCAG	2 cut(s)	595, 1678
BspPI	GGATC	1 cut(s)	1724
BspT107I	GGYRCC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	1248
BsrI	ACTGG	2 cut(s)	709, 1215
BssECI	CCNNGG	4 cut(s)	122, 1041, 1528, 1600
BssMI	GATC	5 cut(s)	348, 744, 946, 1419, 1729
BssNAI	GTATAC	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	663
BssT1I	CCWWGG	1 cut(s)	122
Bst1107I	GTATAC	1 cut(s)	333
Bst2UI	CCWGG	3 cut(s)	170, 788, 1042
Bst4CI	ACNGT	8 cut(s)	877, 887, 908, 1307, 1370, 1555, 1627, 1690
Bst6I	CTCTTC	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	663
BstBAI	YACGTR	1 cut(s)	1565
BstC8I	GCNNGC	2 cut(s)	1167, 1178
BstDEI	CTNAG	3 cut(s)	486, 608, 1469
BstF5I	GGATG	5 cut(s)	178, 819, 904, 1114, 1219
BstKTI	GATC	5 cut(s)	351, 747, 949, 1422, 1732
BstMAI	GTCTC	5 cut(s)	138, 170, 487, 1544, 1616
BstMBI	GATC	5 cut(s)	348, 744, 946, 1419, 1729
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 214, 705
BstNI	CCWGG	3 cut(s)	170, 788, 1042
BstSCI	CCNGG	3 cut(s)	168, 786, 1040
BstSFI	CTRYAG	3 cut(s)	591, 883, 1674
BstV1I	GCAGC	5 cut(s)	297, 501, 503, 506, 605
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	1729
BstYI	RGATCY	1 cut(s)	1729
BstZ17I	GTATAC	1 cut(s)	333
BsuRI	GGCC	3 cut(s)	708, 1176, 1218
BtsCI	GGATG	5 cut(s)	178, 819, 904, 1114, 1219
BtsI	GCAGTG	1 cut(s)	1641
BtsIMutI	CAGTG	2 cut(s)	716, 1641
Cac8I	GCNNGC	2 cut(s)	1167, 1178
CciI	TCATGA	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	1357
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	1408
CviAII	CATG	6 cut(s)	346, 574, 689, 1276, 1683, 1746
CviQI	GTAC	1 cut(s)	1408
DdeI	CTNAG	3 cut(s)	486, 608, 1469
DpnI	GATC	5 cut(s)	350, 746, 948, 1421, 1731
DpnII	GATC	5 cut(s)	348, 744, 946, 1419, 1729
DraIII	CACNNNGTG	1 cut(s)	833
EaeI	YGGCCR	1 cut(s)	1174
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	1357
Eco57I	CTGAAG	1 cut(s)	41
Eco72I	CACGTG	1 cut(s)	1565
Eco88I	CYCGRG	1 cut(s)	630
EcoRII	CCWGG	3 cut(s)	168, 786, 1040
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	122
EcoT22I	ATGCAT	2 cut(s)	1277, 1684
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	6 cut(s)	349, 577, 692, 1279, 1686, 1749
FaqI	GGGAC	3 cut(s)	1370, 1440, 1653
FatI	CATG	6 cut(s)	345, 573, 688, 1275, 1682, 1745
FbaI	TGATCA	3 cut(s)	348, 744, 1419
FblI	GTMKAC	3 cut(s)	62, 332, 910
Fnu4HI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
FokI	GGATG	5 cut(s)	185, 826, 911, 1121, 1226
Fsp4HI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
FspBI	CTAG	3 cut(s)	39, 123, 162
GluI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	708, 1176, 1218
HapII	CCGG	1 cut(s)	969
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	663
Hin1II	CATG	6 cut(s)	349, 577, 692, 1279, 1686, 1749
HindIII	AAGCTT	3 cut(s)	111, 181, 1167
HinfI	GANTC	3 cut(s)	381, 685, 850
HpaII	CCGG	1 cut(s)	969
HphI	GGTGA	2 cut(s)	287, 871
Hpy166II	GTNNAC	7 cut(s)	63, 333, 543, 890, 911, 1070, 1648
Hpy188I	TCNGA	4 cut(s)	487, 1063, 1529, 1601
Hpy188III	TCNNGA	7 cut(s)	323, 346, 630, 632, 1052, 1571, 1649
Hpy8I	GTNNAC	7 cut(s)	63, 333, 543, 890, 911, 1070, 1648
HpyAV	CCTTC	4 cut(s)	85, 228, 787, 1313
HpyCH4III	ACNGT	8 cut(s)	877, 887, 908, 1307, 1370, 1555, 1627, 1690
HpyCH4IV	ACGT	3 cut(s)	663, 1406, 1564
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 214, 705
HpyF3I	CTNAG	3 cut(s)	486, 608, 1469
HpySE526I	ACGT	3 cut(s)	663, 1406, 1564
Hsp92I	GRCGYC	1 cut(s)	663
Hsp92II	CATG	6 cut(s)	349, 577, 692, 1279, 1686, 1749
Ksp22I	TGATCA	3 cut(s)	348, 744, 1419
Kzo9I	GATC	5 cut(s)	348, 744, 946, 1419, 1729
LmnI	GCTCC	2 cut(s)	971, 1573
Lsp1109I	GCAGC	5 cut(s)	297, 501, 503, 506, 605
LweI	GCATC	7 cut(s)	421, 1024, 1129, 1152, 1355, 1387, 1669
MaeI	CTAG	3 cut(s)	39, 123, 162
MaeII	ACGT	3 cut(s)	663, 1406, 1564
MaeIII	GTNAC	4 cut(s)	157, 772, 877, 1433
MalI	GATC	5 cut(s)	350, 746, 948, 1421, 1731
MboI	GATC	5 cut(s)	348, 744, 946, 1419, 1729
MboII	GAAGA	6 cut(s)	9, 47, 400, 751, 1140, 1493
MfeI	CAATTG	2 cut(s)	260, 602
MflI	RGATCY	1 cut(s)	1729
MhlI	GDGCHC	1 cut(s)	1570
MlsI	TGGCCA	1 cut(s)	1176
MluNI	TGGCCA	1 cut(s)	1176
Mox20I	TGGCCA	1 cut(s)	1176
Mph1103I	ATGCAT	2 cut(s)	1277, 1684
MroXI	GAANNNNTTC	1 cut(s)	1151
MscI	TGGCCA	1 cut(s)	1176
MseI	TTAA	3 cut(s)	179, 1445, 1697
MslI	CAYNNNNRTG	1 cut(s)	998
Msp20I	TGGCCA	1 cut(s)	1176
MspI	CCGG	1 cut(s)	969
MspR9I	CCNGG	3 cut(s)	170, 788, 1042
MunI	CAATTG	2 cut(s)	260, 602
Mva1269I	GAATGC	1 cut(s)	1277
MvaI	CCWGG	3 cut(s)	170, 788, 1042
MwoI	GCNNNNNNNGC	3 cut(s)	205, 214, 705
NdeII	GATC	5 cut(s)	348, 744, 946, 1419, 1729
NlaIII	CATG	6 cut(s)	349, 577, 692, 1279, 1686, 1749
NlaIV	GGNNCC	3 cut(s)	279, 967, 1358
NmuCI	GTSAC	3 cut(s)	157, 877, 1433
NsiI	ATGCAT	2 cut(s)	1277, 1684
PaeR7I	CTCGAG	1 cut(s)	630
PagI	TCATGA	1 cut(s)	345
PctI	GAATGC	1 cut(s)	1277
PdmI	GAANNNNTTC	1 cut(s)	1151
PfeI	GAWTC	3 cut(s)	381, 685, 850
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	5 cut(s)	312, 493, 496, 516, 595
PmaCI	CACGTG	1 cut(s)	1565
PmlI	CACGTG	1 cut(s)	1565
Ppu21I	YACGTR	1 cut(s)	1565
PshBI	ATTAAT	1 cut(s)	1697
PsiI	TTATAA	1 cut(s)	990
Psp6I	CCWGG	3 cut(s)	168, 786, 1040
PspCI	CACGTG	1 cut(s)	1565
PspGI	CCWGG	3 cut(s)	168, 786, 1040
PspN4I	GGNNCC	3 cut(s)	279, 967, 1358
PspPI	GGNCC	1 cut(s)	1357
PstI	CTGCAG	2 cut(s)	595, 1678
PsuI	RGATCY	1 cut(s)	1729
RsaI	GTAC	1 cut(s)	1409
RsaNI	GTAC	1 cut(s)	1408
RseI	CAYNNNNRTG	1 cut(s)	998
SaqAI	TTAA	3 cut(s)	179, 1445, 1697
SatI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
Sau3AI	GATC	5 cut(s)	348, 744, 946, 1419, 1729
Sau96I	GGNCC	1 cut(s)	1357
ScrFI	CCNGG	3 cut(s)	170, 788, 1042
SduI	GDGCHC	1 cut(s)	1570
SfaNI	GCATC	7 cut(s)	421, 1024, 1129, 1152, 1355, 1387, 1669
SfcI	CTRYAG	3 cut(s)	591, 883, 1674
Sfr274I	CTCGAG	1 cut(s)	630
SinI	GGWCC	1 cut(s)	1357
SlaI	CTCGAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	998
SmlI	CTYRAG	2 cut(s)	470, 630
SmoI	CTYRAG	2 cut(s)	470, 630
SpeI	ACTAGT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	1189
SspMI	CTAG	3 cut(s)	39, 123, 162
StyD4I	CCNGG	3 cut(s)	168, 786, 1040
StyI	CCWWGG	1 cut(s)	122
TaaI	ACNGT	8 cut(s)	877, 887, 908, 1307, 1370, 1555, 1627, 1690
TaiI	ACGT	3 cut(s)	666, 1409, 1567
TaqI	TCGA	2 cut(s)	631, 792
TfiI	GAWTC	3 cut(s)	381, 685, 850
Tru1I	TTAA	3 cut(s)	179, 1445, 1697
Tru9I	TTAA	3 cut(s)	179, 1445, 1697
TscAI	CASTG	2 cut(s)	716, 1641
TseFI	GTSAC	3 cut(s)	157, 877, 1433
TseI	GCWGC	5 cut(s)	310, 491, 494, 514, 593
Tsp45I	GTSAC	3 cut(s)	157, 877, 1433
TspDTI	ATGAA	7 cut(s)	92, 438, 677, 971, 1016, 1292, 1467
TspGWI	ACGGA	2 cut(s)	1452, 1673
TspRI	CASTG	2 cut(s)	716, 1641
VpaK11BI	GGWCC	1 cut(s)	1357
VspI	ATTAAT	1 cut(s)	1697
XapI	RAATTY	2 cut(s)	413, 766
XhoI	CTCGAG	1 cut(s)	630
XmaJI	CCTAGG	1 cut(s)	122
XmiI	GTMKAC	3 cut(s)	62, 332, 910
XmnI	GAANNNNTTC	1 cut(s)	1151
XspI	CTAG	3 cut(s)	39, 123, 162
ZraI	GACGTC	1 cut(s)	664
Zsp2I	ATGCAT	2 cut(s)	1277, 1684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.