Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

50259932 .. 50272167

Gene Structure 12236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGCCTCGTCTTGATTCTATTCTTGTTTTCTTCAACAATTTCTTTCTATCTTCCTTTCATTCTCAAGCTTCAGTTCCCAGCACTATTAGAAAGCCACCCAAACCCACTAATCTTGCGGTTGGGGATGGCTTAAGTTTGTTCAATGCGATGCTTCAAATGCGTCCTCTGCCTTGTGTTGTCCGTTTCAATCAAATCATGGGTCACATCGCAAAATTGAAACATTATCAGGCAGTCATTTCTCTGTATACCCAAATGGATCGGCTGCGAGTTGTTCCCGATGCTTACACTCTCAATATTATTATCAATTGCTTCTGTCATTTGAACCAAATGGGATTCAGTTTGTCTGTGTTGGGAAAATTCTTCAAATTTGGTATTCAACCAAATATCACAACCCTCAACACTCTTATCAAGGGCTTTTTCCTTGAAGGGAAAGTTTCTCAGGCGGCACTACTTTTCAGCACAATGGTGGAGCAAGGTTGTAAGCCAAACGATGTTACTTTCGGAACGCTAATAAAGGGCTATTGCATGATGGGAAATAATACTGCAGCTATTCAATTGCTTAGGAAGATGGAACAACAATCTCGAGATTGTAAGCCTAATGTGGTTGTCTATAATATCATCATTGACAGTCTCTGTAAGGATACACTAGTTCCTGATGCAGTTAAGCTCTTTTCAGAAATGATTAGTAGGGGTATCGCCCCTGACGTCATTACTTATACCTCTTTGATTCATGGAGTTTGCAAACTAGGCCACTGGAAAGAAGCTACAAGATTGTTGAATGAGATGGTCGGTAAAGATATCTTCCCGAATTTAGTAACCTTCAGTATCCTGGTCGATACACTTTGTAAGGAGGGGATGGTTGTGGAAGCACAAAGTGTGCTTGAAATGATGATTCAAAGAGGTATCAAACCTGATACAGTCACCTACAGTTCACTTATGGATGGCTACTGTCTGCGAGGAGACATGGAGAAAGCTAAAGAGGTTTTTGATCTTATGATTAGCAAGGGCTCCGTTGTTAATGCTTATAGTTATACCATACTGATAAATGGATATTGTAGGTGTAAAAGGATGAATGAGGCCATCAGGCTTTTTCACGAAATGTCTGATAGGGGACTGGTTCCAAATACCGTCACATATACTGCTCTTATGGATGGTTTTTGCAAAGTGGGAAGAATACTAGATGCCCAGAGATTGTTCAGTAAGTTGCAAGCTTGTGGCCAAGTTCTTGATGTTCAAACTTATGCCGTTCTACTGGATGGCCTATTTAAAAACCAACAACTTGCTATGGCAATGGAGTTGTTCAGGGAGTTGGAATGCATGAAGCTGGATTTGAATATAGTAATATACAGTACTCTTATTGAAGGTTTGTGTATAGCTGGAAAAATTGCATCTGCAAGGGACCATTTTTACGGTTTATCATCAAAAGGACTCGAACCTGATGCAAGGACGTACACTATAATGATCAAGGGACTTTGTGACAGAGGCTTAATAACTGAAGCGGAAAAGTTGCTTAGAGAAATGGAAGATAAATGCCATTCTCCAAATGACTGCACATATAACACAATTATCCGAGGGTTTCTCAATAATGACGAGACAGTAAAGGCAGTGGGACTTGTTCACGAAATGATGGACAGGGGTTTCTCTGCAGATGCATGGACTATGGAATTAATCATTGGTTTATTGTCTAAAGATAAGGTAGATCCTGGTTTGTTGTCATTGATAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

576

Amino Acids

64.56

Weight (kDa)

7.99

Isoelectric Point (pI)

25.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	57 - 106	1.1e-09	PPR repeat family
PPR_3	PF13812	122 - 174	3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	124 - 156	1.6e-06	PPR repeat
PPR_2	PF13041	127 - 175	3.3e-14	PPR repeat family
PPR_1	PF12854	159 - 191	8.9e-11	PPR repeat
PPR_3	PF13812	165 - 209	4.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	169 - 213	1.6e-09	PPR repeat family
PPR_long	PF17177	182 - 320	1.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	195 - 227	1.1e-11	PPR repeat
PPR_2	PF13041	199 - 248	1.4e-18	PPR repeat family
PPR	PF01535	202 - 232	2.5e-06	PPR repeat
PPR_3	PF13812	222 - 281	1.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	230 - 263	1.4e-12	PPR repeat
PPR_2	PF13041	235 - 283	9.8e-16	PPR repeat family
PPR	PF01535	237 - 266	6.2e-07	PPR repeat
PPR_1	PF12854	265 - 297	2e-09	PPR repeat
PPR_2	PF13041	278 - 317	9.4e-11	PPR repeat family
PPR_1	PF12854	300 - 332	5.9e-12	PPR repeat
PPR_2	PF13041	306 - 353	1.4e-14	PPR repeat family
PPR	PF01535	307 - 336	4.4e-09	PPR repeat
TPR_24	PF23276	320 - 436	3.2e-11	Fungal tetratrico peptide repeats
PPR_1	PF12854	335 - 368	2.5e-11	PPR repeat
PPR	PF01535	342 - 372	3.8e-09	PPR repeat
PPR_2	PF13041	343 - 388	8.4e-19	PPR repeat family
PPR_1	PF12854	370 - 401	1.1e-10	PPR repeat
PPR_2	PF13041	374 - 423	3.4e-12	PPR repeat family
PPR_2	PF13041	410 - 457	6.7e-08	PPR repeat family
PPR_2	PF13041	445 - 493	2e-12	PPR repeat family
PPR_1	PF12854	475 - 508	9.6e-13	PPR repeat
PPR	PF01535	483 - 510	1.1e-06	PPR repeat
PPR_2	PF13041	490 - 527	4.8e-08	PPR repeat family
PPR_2	PF13041	514 - 559	2.5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	3 cut(s)	116, 443, 1499
AclWI	GGATC	2 cut(s)	264, 1694
AcoI	YGGCCR	1 cut(s)	1216
AcsI	RAATTY	3 cut(s)	356, 365, 808
AcuI	CTGAAG	3 cut(s)	54, 805, 1515
AcyI	GRCGYC	1 cut(s)	705
AdeI	CACNNNGTG	1 cut(s)	875
AfaI	GTAC	2 cut(s)	1351, 1451
AflII	CTTAAG	1 cut(s)	130
AhlI	ACTAGT	1 cut(s)	646
AjnI	CCWGG	2 cut(s)	828, 1702
AjuI	GAANNNNNNNTTGG	2 cut(s)	1656, 1688
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	8 cut(s)	68, 548, 667, 764, 974, 1211, 1324, 1376
AluI	AGCT	8 cut(s)	68, 548, 667, 764, 974, 1211, 1324, 1376
Alw26I	GTCTC	3 cut(s)	635, 954, 1586
AlwI	GGATC	2 cut(s)	264, 1694
AlwNI	CAGNNNCTG	1 cut(s)	633
Ama87I	CYCGRG	1 cut(s)	582
AoxI	GGCC	4 cut(s)	748, 1077, 1216, 1258
ApeKI	GCWGC	2 cut(s)	262, 545
ApoI	RAATTY	3 cut(s)	356, 365, 808
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
AseI	ATTAAT	1 cut(s)	1667
AspS9I	GGNCC	1 cut(s)	1399
AsuHPI	GGTGA	1 cut(s)	913
AvaI	CYCGRG	1 cut(s)	582
AvaII	GGWCC	1 cut(s)	1399
BaeI	ACNNNNGTAYC	2 cut(s)	633, 666
BalI	TGGCCA	1 cut(s)	1218
BanII	GRGCYC	1 cut(s)	1010
BbvI	GCAGC	2 cut(s)	249, 557
BceAI	ACGGC	1 cut(s)	1229
BcgI	CGANNNNNNTGC	2 cut(s)	1421, 1455
BciT130I	CCWGG	2 cut(s)	830, 1704
BciVI	GTATCC	2 cut(s)	634, 836
BclI	TGATCA	1 cut(s)	1461
BcoDI	GTCTC	3 cut(s)	635, 954, 1586
BcuI	ACTAGT	1 cut(s)	646
BfaI	CTAG	3 cut(s)	647, 746, 1178
BfmI	CTRYAG	3 cut(s)	543, 925, 1644
BfrI	CTTAAG	1 cut(s)	130
BfuI	GTATCC	2 cut(s)	634, 836
BisI	GCNGC	3 cut(s)	263, 444, 546
BlsI	GCNGC	3 cut(s)	264, 445, 547
BmcAI	AGTACT	1 cut(s)	1351
Bme1390I	CCNGG	2 cut(s)	830, 1704
Bme18I	GGWCC	1 cut(s)	1399
BmeT110I	CYCGRG	1 cut(s)	582
BmgT120I	GGNCC	1 cut(s)	1399
BmiI	GGNNCC	3 cut(s)	1009, 1119, 1400
BmrFI	CCNGG	2 cut(s)	830, 1704
BmsI	GCATC	7 cut(s)	138, 268, 646, 1171, 1397, 1429, 1639
BplI	GAGNNNNNCTC	2 cut(s)	1563, 1595
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	705
BsaJI	CCNNGG	1 cut(s)	1570
Bse1I	ACTGG	3 cut(s)	758, 1119, 1257
Bse3DI	GCAATG	1 cut(s)	1296
BseBI	CCWGG	2 cut(s)	830, 1704
BseDI	CCNNGG	1 cut(s)	1570
BseGI	GGATG	6 cut(s)	130, 861, 946, 1074, 1156, 1261
BseMI	GCAATG	1 cut(s)	1296
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	3 cut(s)	758, 1119, 1257
BseRI	GAGGAG	1 cut(s)	972
BseXI	GCAGC	2 cut(s)	249, 557
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	1534
BshFI	GGCC	4 cut(s)	750, 1079, 1218, 1260
BsiHKCI	CYCGRG	1 cut(s)	582
BslFI	GGGAC	4 cut(s)	1125, 1412, 1482, 1623
BsmAI	GTCTC	3 cut(s)	635, 954, 1586
BsmFI	GGGAC	4 cut(s)	1125, 1412, 1482, 1623
BsmI	GAATGC	1 cut(s)	1319
BsnI	GGCC	4 cut(s)	750, 1079, 1218, 1260
BsoBI	CYCGRG	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	1010
Bsp143I	GATC	4 cut(s)	256, 988, 1461, 1699
BspACI	CCGC	3 cut(s)	116, 443, 1499
BspANI	GGCC	4 cut(s)	750, 1079, 1218, 1260
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	3 cut(s)	1009, 1119, 1400
BspMAI	CTGCAG	2 cut(s)	547, 1648
BspPI	GGATC	2 cut(s)	264, 1694
BspTI	CTTAAG	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	1296
BsrI	ACTGG	3 cut(s)	758, 1119, 1257
BssECI	CCNNGG	1 cut(s)	1570
BssMI	GATC	4 cut(s)	256, 988, 1461, 1699
BssNAI	GTATAC	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	705
Bst1107I	GTATAC	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	830, 1704
Bst4CI	ACNGT	8 cut(s)	629, 919, 929, 950, 1129, 1349, 1412, 1597
BstACI	GRCGYC	1 cut(s)	705
BstAFI	CTTAAG	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	1209
BstDEI	CTNAG	3 cut(s)	438, 560, 1511
BstF5I	GGATG	6 cut(s)	130, 861, 946, 1074, 1156, 1261
BstKTI	GATC	4 cut(s)	259, 991, 1464, 1702
BstMAI	GTCTC	3 cut(s)	635, 954, 1586
BstMBI	GATC	4 cut(s)	256, 988, 1461, 1699
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 166, 747
BstNI	CCWGG	2 cut(s)	830, 1704
BstSCI	CCNGG	2 cut(s)	828, 1702
BstSFI	CTRYAG	3 cut(s)	543, 925, 1644
BstV1I	GCAGC	2 cut(s)	249, 557
BstX2I	RGATCY	1 cut(s)	1699
BstYI	RGATCY	1 cut(s)	1699
BstZ17I	GTATAC	1 cut(s)	246
BsuI	GTATCC	2 cut(s)	634, 836
BsuRI	GGCC	4 cut(s)	750, 1079, 1218, 1260
BtgZI	GCGATG	2 cut(s)	161, 190
BtsCI	GGATG	6 cut(s)	130, 861, 946, 1074, 1156, 1261
BtsI	GCAGTG	1 cut(s)	1611
BtsIMutI	CAGTG	2 cut(s)	751, 1611
Cac8I	GCNNGC	1 cut(s)	1209
CaiI	CAGNNNCTG	1 cut(s)	633
Cfr13I	GGNCC	1 cut(s)	1399
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	1350, 1450
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	6 cut(s)	196, 526, 731, 964, 1318, 1653
CviQI	GTAC	2 cut(s)	1350, 1450
DdeI	CTNAG	3 cut(s)	438, 560, 1511
DpnI	GATC	4 cut(s)	258, 990, 1463, 1701
DpnII	GATC	4 cut(s)	256, 988, 1461, 1699
DraI	TTTAAA	1 cut(s)	1267
DraIII	CACNNNGTG	1 cut(s)	875
EaeI	YGGCCR	1 cut(s)	1216
Eco24I	GRGCYC	1 cut(s)	1010
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	1 cut(s)	1399
Eco57I	CTGAAG	3 cut(s)	54, 805, 1515
Eco88I	CYCGRG	1 cut(s)	582
EcoRII	CCWGG	2 cut(s)	828, 1702
EcoRV	GATATC	1 cut(s)	799
EcoT22I	ATGCAT	2 cut(s)	1319, 1654
EcoT38I	GRGCYC	1 cut(s)	1010
FaeI	CATG	6 cut(s)	199, 529, 734, 967, 1321, 1656
FaqI	GGGAC	4 cut(s)	1125, 1412, 1482, 1623
FatI	CATG	6 cut(s)	195, 525, 730, 963, 1317, 1652
FbaI	TGATCA	1 cut(s)	1461
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	3 cut(s)	263, 444, 546
FokI	GGATG	6 cut(s)	137, 868, 953, 1081, 1163, 1268
FriOI	GRGCYC	1 cut(s)	1010
Fsp4HI	GCNGC	3 cut(s)	263, 444, 546
FspBI	CTAG	3 cut(s)	647, 746, 1178
GluI	GCNGC	3 cut(s)	263, 444, 546
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	750, 1079, 1218, 1260
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	705
Hin1II	CATG	6 cut(s)	199, 529, 734, 967, 1321, 1656
HindIII	AAGCTT	2 cut(s)	66, 1209
HinfI	GANTC	5 cut(s)	14, 333, 727, 892, 1428
HphI	GGTGA	1 cut(s)	913
Hpy166II	GTNNAC	4 cut(s)	246, 932, 1452, 1618
Hpy188I	TCNGA	4 cut(s)	503, 676, 1105, 1571
Hpy188III	TCNNGA	9 cut(s)	11, 275, 582, 584, 653, 805, 1094, 1226, 1619
Hpy8I	GTNNAC	4 cut(s)	246, 932, 1452, 1618
HpyAV	CCTTC	3 cut(s)	419, 829, 1355
HpyCH4III	ACNGT	8 cut(s)	629, 919, 929, 950, 1129, 1349, 1412, 1597
HpyCH4IV	ACGT	2 cut(s)	705, 1448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 166, 747
HpyF3I	CTNAG	3 cut(s)	438, 560, 1511
HpySE526I	ACGT	2 cut(s)	705, 1448
Hsp92I	GRCGYC	1 cut(s)	705
Hsp92II	CATG	6 cut(s)	199, 529, 734, 967, 1321, 1656
Ksp22I	TGATCA	1 cut(s)	1461
Kzo9I	GATC	4 cut(s)	256, 988, 1461, 1699
LmnI	GCTCC	2 cut(s)	469, 1013
Lsp1109I	GCAGC	2 cut(s)	249, 557
LweI	GCATC	7 cut(s)	138, 268, 646, 1171, 1397, 1429, 1639
MaeI	CTAG	3 cut(s)	647, 746, 1178
MaeII	ACGT	2 cut(s)	705, 1448
MaeIII	GTNAC	6 cut(s)	200, 493, 814, 919, 1129, 1475
MalI	GATC	4 cut(s)	258, 990, 1463, 1701
MboI	GATC	4 cut(s)	256, 988, 1461, 1699
MboII	GAAGA	7 cut(s)	22, 42, 352, 577, 793, 1182, 1535
MfeI	CAATTG	2 cut(s)	304, 554
MflI	RGATCY	1 cut(s)	1699
MhlI	GDGCHC	1 cut(s)	1010
MlsI	TGGCCA	1 cut(s)	1218
MluNI	TGGCCA	1 cut(s)	1218
MlyI	GAGTC	1 cut(s)	1422
MmeI	TCCRAC	1 cut(s)	1290
Mox20I	TGGCCA	1 cut(s)	1218
Mph1103I	ATGCAT	2 cut(s)	1319, 1654
MscI	TGGCCA	1 cut(s)	1218
MseI	TTAA	6 cut(s)	131, 663, 1017, 1266, 1487, 1667
MslI	CAYNNNNRTG	2 cut(s)	464, 1457
Msp20I	TGGCCA	1 cut(s)	1218
MspCI	CTTAAG	1 cut(s)	130
MspR9I	CCNGG	2 cut(s)	830, 1704
MunI	CAATTG	2 cut(s)	304, 554
Mva1269I	GAATGC	1 cut(s)	1319
MvaI	CCWGG	2 cut(s)	830, 1704
MwoI	GCNNNNNNNGC	3 cut(s)	157, 166, 747
NdeII	GATC	4 cut(s)	256, 988, 1461, 1699
NlaIII	CATG	6 cut(s)	199, 529, 734, 967, 1321, 1656
NlaIV	GGNNCC	3 cut(s)	1009, 1119, 1400
NmuCI	GTSAC	4 cut(s)	200, 919, 1129, 1475
NsiI	ATGCAT	2 cut(s)	1319, 1654
OliI	CACNNNNGTG	1 cut(s)	464
PaeR7I	CTCGAG	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	1 cut(s)	702
PctI	GAATGC	1 cut(s)	1319
PfeI	GAWTC	4 cut(s)	14, 333, 727, 892
PkrI	GCNGC	3 cut(s)	264, 445, 547
PleI	GAGTC	1 cut(s)	1422
PpsI	GAGTC	1 cut(s)	1422
PshBI	ATTAAT	1 cut(s)	1667
Psp6I	CCWGG	2 cut(s)	828, 1702
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	828, 1702
PspN4I	GGNNCC	3 cut(s)	1009, 1119, 1400
PspPI	GGNCC	1 cut(s)	1399
PstI	CTGCAG	2 cut(s)	547, 1648
PstNI	CAGNNNCTG	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	1699
RsaI	GTAC	2 cut(s)	1351, 1451
RsaNI	GTAC	2 cut(s)	1350, 1450
RseI	CAYNNNNRTG	2 cut(s)	464, 1457
SaqAI	TTAA	6 cut(s)	131, 663, 1017, 1266, 1487, 1667
SatI	GCNGC	3 cut(s)	263, 444, 546
Sau3AI	GATC	4 cut(s)	256, 988, 1461, 1699
Sau96I	GGNCC	1 cut(s)	1399
ScaI	AGTACT	1 cut(s)	1351
SchI	GAGTC	1 cut(s)	1422
ScrFI	CCNGG	2 cut(s)	830, 1704
SduI	GDGCHC	1 cut(s)	1010
SfaNI	GCATC	7 cut(s)	138, 268, 646, 1171, 1397, 1429, 1639
SfcI	CTRYAG	3 cut(s)	543, 925, 1644
Sfr274I	CTCGAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	1399
SlaI	CTCGAG	1 cut(s)	582
SmiMI	CAYNNNNRTG	2 cut(s)	464, 1457
SmlI	CTYRAG	3 cut(s)	63, 130, 582
SmoI	CTYRAG	3 cut(s)	63, 130, 582
SpeI	ACTAGT	1 cut(s)	646
SsiI	CCGC	3 cut(s)	116, 443, 1499
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	3 cut(s)	647, 746, 1178
StyD4I	CCNGG	2 cut(s)	828, 1702
TaaI	ACNGT	8 cut(s)	629, 919, 929, 950, 1129, 1349, 1412, 1597
TaiI	ACGT	2 cut(s)	708, 1451
TaqI	TCGA	3 cut(s)	583, 834, 1431
TatI	WGTACW	1 cut(s)	1349
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	4 cut(s)	14, 333, 727, 892
Tru1I	TTAA	6 cut(s)	131, 663, 1017, 1266, 1487, 1667
Tru9I	TTAA	6 cut(s)	131, 663, 1017, 1266, 1487, 1667
TscAI	CASTG	2 cut(s)	758, 1611
TseFI	GTSAC	4 cut(s)	200, 919, 1129, 1475
TseI	GCWGC	2 cut(s)	262, 545
Tsp45I	GTSAC	4 cut(s)	200, 919, 1129, 1475
TspDTI	ATGAA	4 cut(s)	47, 719, 1085, 1334
TspGWI	ACGGA	2 cut(s)	170, 1000
TspRI	CASTG	2 cut(s)	758, 1611
Vha464I	CTTAAG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	1399
VspI	ATTAAT	1 cut(s)	1667
XapI	RAATTY	3 cut(s)	356, 365, 808
XhoI	CTCGAG	1 cut(s)	582
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	3 cut(s)	647, 746, 1178
ZraI	GACGTC	1 cut(s)	706
ZrmI	AGTACT	1 cut(s)	1351
Zsp2I	ATGCAT	2 cut(s)	1319, 1654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.