Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

50251826 .. 50254984

Gene Structure 3159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTACTTCAAATTTCCAAGAAAAAGCACAGCAAAGTACCAACAATAACAACAACTGTAAGAACCTCCCTAATCCTTTTGATTGCTAACACACCCTTCTTATGTGACTTGAATCGTCTTAGAGACGGGTCCCGTGCCAAGAGCTGCAGACCTTATACAGAGGGTGAAATTCACAAGATTCTTGACCTTAGATACCAGGAAGAAGAAGTTGAGATGTCTGAAGAGGCAAAGCATTTGTTGACCAAGATTGCTGCTGCATTGGCATGCCAAAAACGGAAGGGAAAGACTGTTGAGATGGAGGATTTTAACCATGTTTATCTGTTTTTGAATGTGAAGGGATCAACACAATACTTGATGGAGTATCAGAATCAGTACATGTTCAACAATGCTGATGAAGATGATACCAATGCCATGCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

140

Amino Acids

16.19

Weight (kDa)

6.9

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	12, 168
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	39, 374
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	4 cut(s)	11, 112, 328, 382
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	346
ApeKI	GCWGC	3 cut(s)	144, 251, 254
ApoI	RAATTY	2 cut(s)	12, 168
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	131, 238, 241
BccI	CCATC	2 cut(s)	289, 349
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	145
BisI	GCNGC	3 cut(s)	145, 252, 255
BlsI	GCNGC	3 cut(s)	146, 253, 256
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	130, 131
BmrFI	CCNGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	197
BseXI	GCAGC	3 cut(s)	131, 238, 241
BslFI	GGGAC	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	338
BspLI	GGNNCC	2 cut(s)	130, 131
BspMAI	CTGCAG	1 cut(s)	149
BspPI	GGATC	1 cut(s)	346
BssMI	GATC	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	58, 289
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	119, 188
BstKTI	GATC	1 cut(s)	341
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	267, 379
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	131, 238, 241
Cac8I	GCNNGC	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	38, 373
CviAII	CATG	4 cut(s)	264, 311, 376, 412
CviJI	RGCY	1 cut(s)	144
CviKI_1	RGCY	1 cut(s)	144
CviQI	GTAC	2 cut(s)	38, 373
DdeI	CTNAG	2 cut(s)	119, 188
DpnI	GATC	1 cut(s)	340
DpnII	GATC	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	4 cut(s)	267, 314, 379, 415
FaiI	YATR	6 cut(s)	103, 156, 265, 312, 377, 413
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	263, 310, 375, 411
Fnu4HI	GCNGC	3 cut(s)	145, 252, 255
Fsp4HI	GCNGC	3 cut(s)	145, 252, 255
GluI	GCNGC	3 cut(s)	145, 252, 255
Hin1II	CATG	4 cut(s)	267, 314, 379, 415
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	3 cut(s)	112, 178, 367
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	220, 366
Hpy188III	TCNNGA	2 cut(s)	182, 420
Hpy8I	GTNNAC	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	106, 271, 328
HpyCH4III	ACNGT	2 cut(s)	58, 289
HpyCH4V	TGCA	3 cut(s)	147, 257, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	119, 188
Hsp92II	CATG	4 cut(s)	267, 314, 379, 415
KflI	GGGWCCC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	338
LpnPI	CCDG	2 cut(s)	182, 209
Lsp1109I	GCAGC	3 cut(s)	131, 238, 241
MaeIII	GTNAC	2 cut(s)	3, 104
MalI	GATC	1 cut(s)	340
MboI	GATC	1 cut(s)	338
MboII	GAAGA	4 cut(s)	212, 215, 233, 407
MluCI	AATT	2 cut(s)	12, 168
MnlI	CCTC	4 cut(s)	76, 154, 217, 292
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	1 cut(s)	338
NlaIII	CATG	4 cut(s)	267, 314, 379, 415
NlaIV	GGNNCC	2 cut(s)	130, 131
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	2 cut(s)	267, 379
PaeI	GCATGC	1 cut(s)	267
PciI	ACATGT	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	112, 178, 367
PkrI	GCNGC	3 cut(s)	146, 253, 256
PpuMI	RGGWCCY	1 cut(s)	129
PscI	ACATGT	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	130, 131
PspPI	GGNCC	1 cut(s)	129
PspPPI	RGGWCCY	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	39, 374
RsaNI	GTAC	2 cut(s)	38, 373
RseI	CAYNNNNRTG	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	145, 252, 255
Sau3AI	GATC	1 cut(s)	338
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	4 cut(s)	68, 146, 154, 189
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	262
SphI	GCATGC	1 cut(s)	267
Sse9I	AATT	2 cut(s)	12, 168
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	58, 289
TasI	AATT	2 cut(s)	12, 168
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	3 cut(s)	112, 178, 367
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	3 cut(s)	144, 251, 254
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	2 cut(s)	12, 168
XceI	RCATGY	2 cut(s)	267, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.