Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

22790358 .. 22796799

Gene Structure 6442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACACCATGGGACCCAGTGTTAAGTAAGTCCAGTGGTCCTGACAGGGAGTTGCAGAAGTGTAAGGAGGTTGTGCATTGCGTCACACTTCATGATATTGATGTCATCAACAGCAGAACACAAGGATTTCTGGCTCTCTTTACAGGAGATACTGATGAAATTCATTCAGAAGTGAGAGAACAGATTGACACACAGGAGAAAATCCTTCGCGTCCATCAGGAGGTGGAGGTCCTCTATTTCTGCGAGAAGCTTCCAGAAGCTCAACAGTCAGTGGCGGCTTTTTCGACTCGACGCGGCAGTTCAAGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

103

Amino Acids

11.64

Weight (kDa)

5.09

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	14 - 65	5.9e-16	TIP49 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	210, 294
AciI	CCGC	2 cut(s)	275, 294
AcsI	RAATTY	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	303
AluBI	AGCT	2 cut(s)	250, 260
AluI	AGCT	2 cut(s)	250, 260
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	13, 38, 229
AvaII	GGWCC	3 cut(s)	13, 38, 229
BccI	CCATC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	276, 295
BlsI	GCNGC	2 cut(s)	277, 296
Bme18I	GGWCC	3 cut(s)	13, 38, 229
BmgT120I	GGNCC	3 cut(s)	13, 38, 229
BmiI	GGNNCC	2 cut(s)	14, 15
BmrI	ACTGGG	1 cut(s)	11
BmuI	ACTGGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	2 cut(s)	17, 33
Bse3DI	GCAATG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	76
BseNI	ACTGG	2 cut(s)	17, 33
Bsh1236I	CGCG	2 cut(s)	210, 294
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	2 cut(s)	275, 294
BspFNI	CGCG	2 cut(s)	210, 294
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	14, 15
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	17, 33
BssECI	CCNNGG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	8
BstFNI	CGCG	2 cut(s)	210, 294
BstUI	CGCG	2 cut(s)	210, 294
BtgI	CCRYGG	1 cut(s)	8
BtsIMutI	CAGTG	3 cut(s)	24, 40, 276
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	3 cut(s)	13, 38, 229
CseI	GACGC	3 cut(s)	70, 199, 300
CviAII	CATG	2 cut(s)	9, 92
CviJI	RGCY	4 cut(s)	134, 250, 260, 278
CviKI_1	RGCY	4 cut(s)	134, 250, 260, 278
Eco130I	CCWWGG	1 cut(s)	8
Eco47I	GGWCC	3 cut(s)	13, 38, 229
EcoO109I	RGGNCCY	2 cut(s)	13, 229
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	2 cut(s)	12, 95
FaiI	YATR	2 cut(s)	10, 93
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	8, 91
Fnu4HI	GCNGC	2 cut(s)	276, 295
Fsp4HI	GCNGC	2 cut(s)	276, 295
GluI	GCNGC	2 cut(s)	276, 295
HgaI	GACGC	3 cut(s)	70, 199, 300
Hin1II	CATG	2 cut(s)	12, 95
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	286
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	4 cut(s)	41, 92, 218, 254
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	55, 76
Hsp92II	CATG	2 cut(s)	12, 95
KflI	GGGWCCC	1 cut(s)	13
LpnPI	CCDG	9 cut(s)	30, 31, 46, 54, 116, 129, 179, 203, 267
MaeIII	GTNAC	1 cut(s)	82
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	4 cut(s)	61, 214, 220, 242
MseI	TTAA	1 cut(s)	23
MvnI	CGCG	2 cut(s)	210, 294
NcoI	CCATGG	1 cut(s)	8
NlaIII	CATG	2 cut(s)	12, 95
NlaIV	GGNNCC	2 cut(s)	14, 15
NmuCI	GTSAC	1 cut(s)	82
PagI	TCATGA	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	277, 296
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PpuMI	RGGWCCY	2 cut(s)	13, 229
Psp5II	RGGWCCY	2 cut(s)	13, 229
PspN4I	GGNNCC	2 cut(s)	14, 15
PspPI	GGNCC	3 cut(s)	13, 38, 229
PspPPI	RGGWCCY	2 cut(s)	13, 229
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	276, 295
Sau96I	GGNCC	3 cut(s)	13, 38, 229
SchI	GAGTC	1 cut(s)	280
SetI	ASST	5 cut(s)	72, 225, 231, 252, 262
SinI	GGWCC	3 cut(s)	13, 38, 229
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	2 cut(s)	275, 294
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	284, 289
TasI	AATT	1 cut(s)	159
TauI	GCSGC	2 cut(s)	278, 297
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	3 cut(s)	24, 40, 276
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	80, 152, 171
TspRI	CASTG	3 cut(s)	24, 40, 276
VpaK11BI	GGWCC	3 cut(s)	13, 38, 229
XapI	RAATTY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.