Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006952.1

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

162001 .. 163182

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006952.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgatgcggagagctgctgctgctgcttcttcttcttattgcaacaacagaggtagaggaggaggaggtatgccttgtcttcattctattcttgtttcccttcattctcaagcttcagtggccagcactattagaaacccacccaagctcactaatcttggggttggggacggcgtaagtttgttcaatgagatgcttcaaatgcgtcctctgccttgtgttgtccgtttcaatcaaatcatgggtcacatcgcaaaattgaaacattatcaggcagtcatttctctgtatacccaaatggataggttaagagttgttcccgatgcttacactctcaatattatcatcaattgcttttgtcatttgaaccaaatgggattcagtttgtctgtgttgggaaaattcttcaaatttggtattcaaccaaatatcacaaccctcaacactcttgtcaagggctttttcattcaagggaaagtgtctcaggcagcactacttttcagcacaatggtggagcaaggttgtaagccaaatgatgttactttcagaacgctaataaagggctattgcatgatgggaaataatactgcagctgttcaattgcttaggaagatggaacaacaatctcgagattgtaagcctagtgtggttgtctataatatcatcattgacagtctctgtaaggatacactagttcctgatgcagttaagctcttctcagaaatgatttgtaggggtatagcccctgacgtcattacttatacctctttgattcatggagtttgcaaattaggccagtggaaagaagctacaagattgttgaatgagatggtcagtaaagatatcttcccgaatttagtaacctacagtatcctggtcgatacactttgtaaggaggggatggttgtggaagcacaaagtgtgcttgaaatgatgattcaaagaggtatcaaacctgatacagtcacctacagttcacttatggatggctactgtctgcgaggagaaatggagaaagctaaagaggtttttgatatgatgaatagcaagggctccgttgttaatgcttatagttataccatactgataaatggatattgtaggcgtaaaaggatgaatgaggccatcaggctttttcatgaaatgtctgataggggactggttccaaataccgtcacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

393

Amino Acids

43.82

Weight (kDa)

9.18

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	753
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	3 cut(s)	401, 410, 853
AcuI	CTGAAG	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	750
AdeI	CACNNNGTG	1 cut(s)	920
AhlI	ACTAGT	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	873
AleI	CACNNNNGTG	1 cut(s)	509
AluBI	AGCT	7 cut(s)	14, 113, 148, 593, 712, 809, 1019
AluI	AGCT	7 cut(s)	14, 113, 148, 593, 712, 809, 1019
Alw26I	GTCTC	2 cut(s)	486, 680
AlwNI	CAGNNNCTG	1 cut(s)	678
Ama87I	CYCGRG	1 cut(s)	627
AoxI	GGCC	3 cut(s)	120, 793, 1122
ApeKI	GCWGC	6 cut(s)	14, 17, 20, 23, 488, 590
ApoI	RAATTY	3 cut(s)	401, 410, 853
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AsuHPI	GGTGA	1 cut(s)	958
AvaI	CYCGRG	1 cut(s)	627
BaeI	ACNNNNGTAYC	2 cut(s)	678, 711
BalI	TGGCCA	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	1055
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	5 cut(s)	4, 7, 10, 500, 602
BccI	CCATC	6 cut(s)	568, 607, 823, 895, 980, 1133
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	875
BciVI	GTATCC	2 cut(s)	679, 881
BcoDI	GTCTC	2 cut(s)	486, 680
BcuI	ACTAGT	1 cut(s)	691
BfaI	CTAG	2 cut(s)	642, 692
BfmI	CTRYAG	3 cut(s)	588, 865, 970
BfuI	GTATCC	2 cut(s)	679, 881
BisI	GCNGC	6 cut(s)	15, 18, 21, 24, 489, 591
BlsI	GCNGC	6 cut(s)	16, 19, 22, 25, 490, 592
Bme1390I	CCNGG	1 cut(s)	875
BmeT110I	CYCGRG	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	1054, 1164
BmrFI	CCNGG	1 cut(s)	875
BmsI	GCATC	3 cut(s)	183, 313, 691
BpiI	GAAGAC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	750
Bse1I	ACTGG	2 cut(s)	796, 1164
BseBI	CCWGG	1 cut(s)	875
BseGI	GGATG	3 cut(s)	906, 991, 1119
BseMII	CTCAG	2 cut(s)	497, 732
BseNI	ACTGG	2 cut(s)	796, 1164
BseRI	GAGGAG	4 cut(s)	72, 75, 78, 1017
BseXI	GCAGC	5 cut(s)	4, 7, 10, 500, 602
BshFI	GGCC	3 cut(s)	122, 795, 1124
BsiHKCI	CYCGRG	1 cut(s)	627
BslFI	GGGAC	2 cut(s)	182, 1170
BsmAI	GTCTC	2 cut(s)	486, 680
BsmFI	GGGAC	2 cut(s)	182, 1170
BsnI	GGCC	3 cut(s)	122, 795, 1124
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	1055
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	3 cut(s)	122, 795, 1124
BspCNI	CTCAG	2 cut(s)	496, 731
BspHI	TCATGA	1 cut(s)	1138
BspLI	GGNNCC	2 cut(s)	1054, 1164
BspMAI	CTGCAG	1 cut(s)	592
BspQI	GCTCTTC	1 cut(s)	719
BsrI	ACTGG	2 cut(s)	796, 1164
BssNAI	GTATAC	1 cut(s)	291
BssNI	GRCGYC	1 cut(s)	750
Bst1107I	GTATAC	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	875
Bst4CI	ACNGT	6 cut(s)	674, 869, 964, 974, 995, 1174
Bst6I	CTCTTC	1 cut(s)	719
BstACI	GRCGYC	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	483, 605, 718
BstF5I	GGATG	3 cut(s)	906, 991, 1119
BstMAI	GTCTC	2 cut(s)	486, 680
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 23, 119, 202, 211, 792
BstNI	CCWGG	1 cut(s)	875
BstSCI	CCNGG	1 cut(s)	873
BstSFI	CTRYAG	3 cut(s)	588, 865, 970
BstV1I	GCAGC	5 cut(s)	4, 7, 10, 500, 602
BstV2I	GAAGAC	1 cut(s)	71
BstZ17I	GTATAC	1 cut(s)	291
BsuI	GTATCC	2 cut(s)	679, 881
BsuRI	GGCC	3 cut(s)	122, 795, 1124
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	906, 991, 1119
BtsIMutI	CAGTG	2 cut(s)	123, 803
Cac8I	GCNNGC	1 cut(s)	124
CaiI	CAGNNNCTG	1 cut(s)	678
CciI	TCATGA	1 cut(s)	1138
CseI	GACGC	1 cut(s)	194
CviAII	CATG	4 cut(s)	241, 571, 776, 1139
DdeI	CTNAG	3 cut(s)	483, 605, 718
DraIII	CACNNNGTG	1 cut(s)	920
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	1055
Eco32I	GATATC	1 cut(s)	844
Eco57I	CTGAAG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	873
EcoRV	GATATC	1 cut(s)	844
EcoT38I	GRGCYC	1 cut(s)	1055
FaeI	CATG	4 cut(s)	244, 574, 779, 1142
FaqI	GGGAC	2 cut(s)	182, 1170
FatI	CATG	4 cut(s)	240, 570, 775, 1138
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	6 cut(s)	15, 18, 21, 24, 489, 591
FokI	GGATG	3 cut(s)	913, 998, 1126
FriOI	GRGCYC	1 cut(s)	1055
Fsp4HI	GCNGC	6 cut(s)	15, 18, 21, 24, 489, 591
FspBI	CTAG	2 cut(s)	642, 692
GluI	GCNGC	6 cut(s)	15, 18, 21, 24, 489, 591
HaeIII	GGCC	3 cut(s)	122, 795, 1124
HgaI	GACGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	750
Hin1II	CATG	4 cut(s)	244, 574, 779, 1142
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	3 cut(s)	378, 772, 937
HphI	GGTGA	1 cut(s)	958
Hpy166II	GTNNAC	2 cut(s)	291, 977
Hpy188I	TCNGA	3 cut(s)	548, 721, 1150
Hpy188III	TCNNGA	6 cut(s)	320, 627, 629, 698, 850, 1139
Hpy8I	GTNNAC	2 cut(s)	291, 977
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	6 cut(s)	674, 869, 964, 974, 995, 1174
HpyCH4IV	ACGT	1 cut(s)	750
HpyCH4V	TGCA	5 cut(s)	42, 570, 590, 704, 786
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 23, 119, 202, 211, 792
HpyF3I	CTNAG	3 cut(s)	483, 605, 718
HpySE526I	ACGT	1 cut(s)	750
Hsp92I	GRCGYC	1 cut(s)	750
Hsp92II	CATG	4 cut(s)	244, 574, 779, 1142
LguI	GCTCTTC	1 cut(s)	719
LmnI	GCTCC	2 cut(s)	514, 1058
Lsp1109I	GCAGC	5 cut(s)	4, 7, 10, 500, 602
LweI	GCATC	3 cut(s)	183, 313, 691
MaeI	CTAG	2 cut(s)	642, 692
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	5 cut(s)	245, 538, 859, 964, 1174
MboII	GAAGA	7 cut(s)	21, 24, 71, 397, 622, 706, 838
MfeI	CAATTG	2 cut(s)	349, 599
MhlI	GDGCHC	1 cut(s)	1055
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	7 cut(s)	257, 349, 401, 410, 599, 788, 853
MluNI	TGGCCA	1 cut(s)	122
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	3 cut(s)	308, 708, 1062
MslI	CAYNNNNRTG	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	875
MunI	CAATTG	2 cut(s)	349, 599
MvaI	CCWGG	1 cut(s)	875
MwoI	GCNNNNNNNGC	6 cut(s)	20, 23, 119, 202, 211, 792
NlaIII	CATG	4 cut(s)	244, 574, 779, 1142
NlaIV	GGNNCC	2 cut(s)	1054, 1164
NmuCI	GTSAC	3 cut(s)	245, 964, 1174
OliI	CACNNNNGTG	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	627
PagI	TCATGA	1 cut(s)	1138
PciSI	GCTCTTC	1 cut(s)	719
PfeI	GAWTC	3 cut(s)	378, 772, 937
PkrI	GCNGC	6 cut(s)	16, 19, 22, 25, 490, 592
Psp6I	CCWGG	1 cut(s)	873
PspGI	CCWGG	1 cut(s)	873
PspN4I	GGNNCC	2 cut(s)	1054, 1164
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	593
RseI	CAYNNNNRTG	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	719
SaqAI	TTAA	3 cut(s)	308, 708, 1062
SatI	GCNGC	6 cut(s)	15, 18, 21, 24, 489, 591
ScrFI	CCNGG	1 cut(s)	875
SduI	GDGCHC	1 cut(s)	1055
SfaNI	GCATC	3 cut(s)	183, 313, 691
SfcI	CTRYAG	3 cut(s)	588, 865, 970
Sfr274I	CTCGAG	1 cut(s)	627
SlaI	CTCGAG	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	108, 627
SmoI	CTYRAG	2 cut(s)	108, 627
SpeI	ACTAGT	1 cut(s)	691
Sse9I	AATT	7 cut(s)	257, 349, 401, 410, 599, 788, 853
SsiI	CCGC	1 cut(s)	7
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	642, 692
StyD4I	CCNGG	1 cut(s)	873
TaaI	ACNGT	6 cut(s)	674, 869, 964, 974, 995, 1174
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	2 cut(s)	628, 879
TasI	AATT	7 cut(s)	257, 349, 401, 410, 599, 788, 853
TfiI	GAWTC	3 cut(s)	378, 772, 937
Tru1I	TTAA	3 cut(s)	308, 708, 1062
Tru9I	TTAA	3 cut(s)	308, 708, 1062
TscAI	CASTG	2 cut(s)	123, 803
TseFI	GTSAC	3 cut(s)	245, 964, 1174
TseI	GCWGC	6 cut(s)	14, 17, 20, 23, 488, 590
Tsp45I	GTSAC	3 cut(s)	245, 964, 1174
TspDTI	ATGAA	8 cut(s)	71, 92, 454, 764, 1055, 1127, 1130, 1155
TspGWI	ACGGA	2 cut(s)	215, 1045
TspRI	CASTG	2 cut(s)	123, 803
XapI	RAATTY	3 cut(s)	401, 410, 853
XhoI	CTCGAG	1 cut(s)	627
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	2 cut(s)	642, 692
ZraI	GACGTC	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.