Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000149.1

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

52725 .. 53378

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000149.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggaggaagatcttggtgatgatttagaaaaagtggtgtttatgcattcttcaccgagtcgacttattggtaccagactcatttctgatggtgtaaactcagtccctggtaaagggatatttcaagaccccggacggccggtacaagcttcatttggagaagatgcggccgacgaatctgctaccctattcgtatgccaagacaatctcgcaggtacgcaaaaacgcgtttatgaatttcgatttcaggttcccaaacacggcctccggcgctctattgactctgaattagcatttgattcagaagccaaggatgggcatgacttgcttattggattgatctctggagatttttattccgcgtctttgagacaccaattgcaagattctgggaagaagcttgttggtgccctgcattataacaaagagcactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

145

Amino Acids

16.04

Weight (kDa)

5.27

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
Acc36I	ACCTGC	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	71
AccB1I	GGYRCC	2 cut(s)	71, 407
AccI	GTMKAC	1 cut(s)	61
AccII	CGCG	2 cut(s)	228, 362
AciI	CCGC	2 cut(s)	167, 360
AcoI	YGGCCR	2 cut(s)	137, 168
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	3 cut(s)	73, 144, 217
AfiI	CCNNNNNNNGG	3 cut(s)	113, 260, 315
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	2 cut(s)	149, 400
AluI	AGCT	2 cut(s)	149, 400
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	364
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	3 cut(s)	137, 168, 262
ApoI	RAATTY	1 cut(s)	236
Asp718I	GGTACC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	29, 45
BaeGI	GKGCMC	1 cut(s)	412
BanI	GGYRCC	2 cut(s)	71, 407
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	2 cut(s)	83, 308
BceAI	ACGGC	2 cut(s)	152, 277
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	108, 132
BmiI	GGNNCC	3 cut(s)	73, 252, 409
BmrFI	CCNGG	2 cut(s)	108, 132
BmsI	GCATC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	106, 130, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 260, 315
Bse118I	RCCGGY	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	106, 130, 309
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	3 cut(s)	113, 260, 315
BseMII	CTCAG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	412
BseX3I	CGGCCG	2 cut(s)	137, 168
Bsh1236I	CGCG	2 cut(s)	228, 362
Bsh1285I	CGRYCG	2 cut(s)	140, 171
BshFI	GGCC	3 cut(s)	139, 170, 264
BshNI	GGYRCC	2 cut(s)	71, 407
BsiEI	CGRYCG	2 cut(s)	140, 171
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	3 cut(s)	132, 140, 268
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	113, 260, 315
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	139, 170, 264
Bsp1286I	GDGCHC	2 cut(s)	412, 432
Bsp143I	GATC	2 cut(s)	10, 339
BspACI	CCGC	2 cut(s)	167, 360
BspANI	GGCC	3 cut(s)	139, 170, 264
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	2 cut(s)	228, 362
BspLI	GGNNCC	3 cut(s)	73, 252, 409
BspMI	ACCTGC	1 cut(s)	203
BspT107I	GGYRCC	2 cut(s)	71, 407
BsrFI	RCCGGY	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	106, 130, 309
BssMI	GATC	2 cut(s)	10, 339
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	2 cut(s)	228, 362
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	2 cut(s)	13, 342
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	2 cut(s)	10, 339
BstMCI	CGRYCG	2 cut(s)	140, 171
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 325
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	106, 130
BstSLI	GKGCMC	1 cut(s)	412
BstUI	CGCG	2 cut(s)	228, 362
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BstZI	CGGCCG	2 cut(s)	137, 168
BsuRI	GGCC	3 cut(s)	139, 170, 264
BtsCI	GGATG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	203
CaiI	CAGNNNCTG	1 cut(s)	107
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	139
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	72, 143, 216
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	6 cut(s)	139, 149, 170, 264, 308, 400
CviKI_1	RGCY	6 cut(s)	139, 149, 170, 264, 308, 400
CviQI	GTAC	3 cut(s)	72, 143, 216
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	2 cut(s)	12, 341
DpnII	GATC	2 cut(s)	10, 339
EaeI	YGGCCR	2 cut(s)	137, 168
EagI	CGGCCG	2 cut(s)	137, 168
EclXI	CGGCCG	2 cut(s)	137, 168
Eco130I	CCWWGG	1 cut(s)	309
Eco52I	CGGCCG	2 cut(s)	137, 168
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	1 cut(s)	323
FaiI	YATR	5 cut(s)	44, 196, 234, 321, 420
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	436
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	139, 170, 264
HapII	CCGG	3 cut(s)	132, 140, 268
HgaI	GACGC	1 cut(s)	351
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HindIII	AAGCTT	2 cut(s)	147, 398
HinfI	GANTC	6 cut(s)	58, 78, 176, 281, 299, 386
HpaII	CCGG	3 cut(s)	132, 140, 268
HphI	GGTGA	2 cut(s)	29, 45
Hpy166II	GTNNAC	2 cut(s)	62, 97
Hpy188I	TCNGA	3 cut(s)	88, 286, 304
Hpy188III	TCNNGA	2 cut(s)	125, 345
Hpy8I	GTNNAC	2 cut(s)	62, 97
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	46, 382, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 325
HpyF3I	CTNAG	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	10, 339
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	436
MalI	GATC	2 cut(s)	12, 341
MboI	GATC	2 cut(s)	10, 339
MboII	GAAGA	4 cut(s)	20, 42, 173, 406
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	412, 432
MluCI	AATT	3 cut(s)	236, 287, 377
MluI	ACGCGT	1 cut(s)	226
MlyI	GAGTC	3 cut(s)	67, 72, 275
MnlI	CCTC	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	48
MspI	CCGG	3 cut(s)	132, 140, 268
MspR9I	CCNGG	2 cut(s)	108, 132
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	228, 362
MwoI	GCNNNNNNNGC	2 cut(s)	270, 325
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	10, 339
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	3 cut(s)	73, 252, 409
NsiI	ATGCAT	1 cut(s)	48
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	176, 299, 386
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	3 cut(s)	66, 72, 275
PpsI	GAGTC	3 cut(s)	66, 72, 275
PsiI	TTATAA	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	73, 252, 409
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	3 cut(s)	73, 144, 217
RsaNI	GTAC	3 cut(s)	72, 143, 216
SalI	GTCGAC	1 cut(s)	60
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	10, 339
SchI	GAGTC	3 cut(s)	67, 72, 275
ScrFI	CCNGG	2 cut(s)	108, 132
SduI	GDGCHC	2 cut(s)	412, 432
SetI	ASST	4 cut(s)	151, 217, 252, 402
SfaNI	GCATC	1 cut(s)	154
Sse9I	AATT	3 cut(s)	236, 287, 377
SsiI	CCGC	2 cut(s)	167, 360
SspMI	CTAG	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	106, 130
StyI	CCWWGG	1 cut(s)	309
TaqI	TCGA	2 cut(s)	61, 241
TasI	AATT	3 cut(s)	236, 287, 377
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	3 cut(s)	176, 299, 386
TspDTI	ATGAA	2 cut(s)	141, 249
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	1 cut(s)	436
Zsp2I	ATGCAT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.