Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

16782424 .. 16783043

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1184700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGGAGCTCAAGCTCTCAGAGAGTCGAGACCTGACCCGAATAGAGCGCATAGGCGCACACTCCCACATCCGTGGTCTCGGCCTTGACTCTGCTCTAGAAGCACGCGACGTCTCCGAGGGCATGGTGGGCCAGACTTCCGCCCGAAAGGCCGCTGGCGTCATTCTCCAGATGATCAAGGAAGGAAAAATCGCGGGTCGGGCCGTTCTTCTGGCGGGTCAGCCCGGAACCGGCAAGACCGCCATCGCCATGGGCATGGCGAAGTCGCTCGGCCTCGAATCCCCGTTCGCGATGATGGCCGGAAGCGAGCTCTTTTCTCTGGAGATGTCGAAGACCGAAGCCCTAATGCAAGCTTTTAGGAAAGCTATTGGGGTTAGAATCAAGGAAGAGACTGAGATTATCGAAGGCGAGGTCGTGGAGGTTCAAATTGACCGGCCTGCGGTGGCCGGAGCGGCTTCGAAGACCGGGAAATTGACGTTGAAGACGACGGAGATGGAGACCGTAGTGGCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

172

Amino Acids

18.07

Weight (kDa)

6.77

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	17 - 169	4.3e-64	TIP49 P-loop domain
DnaB_C	PF03796	61 - 143	5e-07	DnaB-like helicase C terminal domain
AAA	PF00004	69 - 121	1.2e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	452
AccII	CGCG	3 cut(s)	108, 194, 290
AciI	CCGC	8 cut(s)	5, 141, 153, 194, 215, 240, 440, 452
AcoI	YGGCCR	2 cut(s)	297, 444
AcyI	GRCGYC	2 cut(s)	111, 159
AfiI	CCNNNNNNNGG	2 cut(s)	230, 439
AgsI	TTSAA	2 cut(s)	425, 481
AleI	CACNNNNGTG	1 cut(s)	72
AluBI	AGCT	5 cut(s)	10, 16, 310, 353, 365
AluI	AGCT	5 cut(s)	10, 16, 310, 353, 365
Alw21I	GWGCWC	2 cut(s)	12, 312
Alw26I	GTCTC	5 cut(s)	24, 83, 118, 383, 491
AoxI	GGCC	8 cut(s)	82, 130, 150, 201, 271, 297, 434, 444
ArsI	GACNNNNNNTTYG	2 cut(s)	396, 428
AspLEI	GCGC	2 cut(s)	51, 59
AspS9I	GGNCC	2 cut(s)	130, 201
AsuC2I	CCSGG	2 cut(s)	225, 466
AsuII	TTCGAA	1 cut(s)	458
BanII	GRGCYC	2 cut(s)	12, 312
BbsI	GAAGAC	3 cut(s)	338, 467, 488
Bbv12I	GWGCWC	2 cut(s)	12, 312
BccI	CCATC	3 cut(s)	251, 289, 487
BceAI	ACGGC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	225, 466
BcoDI	GTCTC	5 cut(s)	24, 83, 118, 383, 491
BfaI	CTAG	1 cut(s)	98
BglI	GCCNNNNNGGC	2 cut(s)	149, 452
BisI	GCNGC	2 cut(s)	153, 453
BlsI	GCNGC	2 cut(s)	154, 454
Bme1390I	CCNGG	2 cut(s)	225, 466
BmgT120I	GGNCC	2 cut(s)	130, 201
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	225, 466
BpiI	GAAGAC	3 cut(s)	338, 467, 488
BpmI	CTGGAG	2 cut(s)	152, 341
Bpu14I	TTCGAA	1 cut(s)	458
BpuMI	CCSGG	2 cut(s)	225, 466
BsaHI	GRCGYC	2 cut(s)	111, 159
BsaI	GGTCTC	3 cut(s)	24, 83, 491
BsaJI	CCNNGG	3 cut(s)	73, 117, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 439
Bse118I	RCCGGY	2 cut(s)	230, 432
BseDI	CCNNGG	3 cut(s)	73, 117, 249
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	230, 439
BseMII	CTCAG	2 cut(s)	33, 384
Bsh1236I	CGCG	3 cut(s)	108, 194, 290
BshFI	GGCC	8 cut(s)	84, 132, 152, 203, 273, 299, 436, 446
BsiHKAI	GWGCWC	2 cut(s)	12, 312
BsiSI	CCGG	6 cut(s)	225, 231, 300, 433, 447, 465
BslI	CCNNNNNNNGG	2 cut(s)	230, 439
BsmAI	GTCTC	5 cut(s)	24, 83, 118, 383, 491
BsmBI	CGTCTC	1 cut(s)	118
BsnI	GGCC	8 cut(s)	84, 132, 152, 203, 273, 299, 436, 446
Bso31I	GGTCTC	3 cut(s)	24, 83, 491
Bsp119I	TTCGAA	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	12, 312
Bsp143I	GATC	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	249
Bsp68I	TCGCGA	1 cut(s)	290
BspACI	CCGC	8 cut(s)	5, 141, 153, 194, 215, 240, 440, 452
BspANI	GGCC	8 cut(s)	84, 132, 152, 203, 273, 299, 436, 446
BspCNI	CTCAG	2 cut(s)	32, 385
BspFNI	CGCG	3 cut(s)	108, 194, 290
BspLI	GGNNCC	1 cut(s)	229
BspT104I	TTCGAA	1 cut(s)	458
BspTNI	GGTCTC	3 cut(s)	24, 83, 491
BsrBI	CCGCTC	1 cut(s)	452
BsrFI	RCCGGY	2 cut(s)	230, 432
BssAI	RCCGGY	2 cut(s)	230, 432
BssECI	CCNNGG	3 cut(s)	73, 117, 249
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	2 cut(s)	111, 159
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	381
BstACI	GRCGYC	2 cut(s)	111, 159
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	5 cut(s)	106, 157, 308, 351, 438
BstDEI	CTNAG	2 cut(s)	19, 393
BstDSI	CCRYGG	2 cut(s)	73, 249
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	3 cut(s)	108, 194, 290
BstHHI	GCGC	2 cut(s)	51, 59
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	5 cut(s)	24, 83, 118, 383, 491
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 129, 149, 200, 296, 452
BstSCI	CCNGG	2 cut(s)	223, 464
BstUI	CGCG	3 cut(s)	108, 194, 290
BstV2I	GAAGAC	3 cut(s)	338, 467, 488
BstXI	CCANNNNNNTGG	3 cut(s)	74, 250, 256
BsuRI	GGCC	8 cut(s)	84, 132, 152, 203, 273, 299, 436, 446
BtgI	CCRYGG	2 cut(s)	73, 249
BtgZI	GCGATG	2 cut(s)	229, 305
BtsCI	GGATG	1 cut(s)	69
BtuMI	TCGCGA	1 cut(s)	290
Cac8I	GCNNGC	5 cut(s)	106, 157, 308, 351, 438
CfoI	GCGC	2 cut(s)	51, 59
Cfr10I	RCCGGY	2 cut(s)	230, 432
Cfr13I	GGNCC	2 cut(s)	130, 201
CseI	GACGC	1 cut(s)	148
CviAII	CATG	3 cut(s)	124, 250, 256
DdeI	CTNAG	2 cut(s)	19, 393
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	2 cut(s)	297, 444
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	2 cut(s)	20, 130
Ecl136II	GAGCTC	2 cut(s)	10, 310
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	2 cut(s)	12, 312
Eco31I	GGTCTC	3 cut(s)	24, 83, 491
Eco53kI	GAGCTC	2 cut(s)	10, 310
EcoICRI	GAGCTC	2 cut(s)	10, 310
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	2 cut(s)	12, 312
ErhI	CCWWGG	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	3 cut(s)	127, 253, 259
FaiI	YATR	4 cut(s)	53, 125, 251, 257
FatI	CATG	3 cut(s)	123, 249, 255
FauI	CCCGC	2 cut(s)	187, 208
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	153, 453
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	2 cut(s)	12, 312
Fsp4HI	GCNGC	2 cut(s)	153, 453
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	2 cut(s)	50, 58
GluI	GCNGC	2 cut(s)	153, 453
GsuI	CTGGAG	2 cut(s)	152, 341
HaeIII	GGCC	8 cut(s)	84, 132, 152, 203, 273, 299, 436, 446
HapII	CCGG	6 cut(s)	225, 231, 300, 433, 447, 465
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	51, 59
Hin1I	GRCGYC	2 cut(s)	111, 159
Hin1II	CATG	3 cut(s)	127, 253, 259
Hin6I	GCGC	2 cut(s)	49, 57
HinP1I	GCGC	2 cut(s)	49, 57
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	4 cut(s)	25, 89, 278, 378
HpaII	CCGG	6 cut(s)	225, 231, 300, 433, 447, 465
Hpy188I	TCNGA	2 cut(s)	22, 118
Hpy188III	TCNNGA	5 cut(s)	29, 98, 169, 289, 320
Hpy99I	CGWCG	2 cut(s)	113, 490
HpyAV	CCTTC	2 cut(s)	176, 398
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	2 cut(s)	111, 476
HpyCH4V	TGCA	1 cut(s)	349
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 129, 149, 200, 296, 452
HpyF3I	CTNAG	2 cut(s)	19, 393
HpySE526I	ACGT	2 cut(s)	111, 476
Hsp92I	GRCGYC	2 cut(s)	111, 159
Hsp92II	CATG	3 cut(s)	127, 253, 259
HspAI	GCGC	2 cut(s)	49, 57
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	7, 449
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	2 cut(s)	111, 476
MalI	GATC	1 cut(s)	176
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	1 cut(s)	174
MboII	GAAGA	5 cut(s)	200, 343, 398, 472, 493
MhlI	GDGCHC	2 cut(s)	12, 312
MluCI	AATT	2 cut(s)	426, 470
MlyI	GAGTC	2 cut(s)	34, 83
MnlI	CCTC	4 cut(s)	112, 284, 403, 412
MslI	CAYNNNNRTG	3 cut(s)	72, 248, 254
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	6 cut(s)	225, 231, 300, 433, 447, 465
MspR9I	CCNGG	2 cut(s)	225, 466
MvnI	CGCG	3 cut(s)	108, 194, 290
MwoI	GCNNNNNNNGC	6 cut(s)	101, 129, 149, 200, 296, 452
NciI	CCSGG	2 cut(s)	225, 466
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	3 cut(s)	127, 253, 259
NlaIV	GGNNCC	1 cut(s)	229
NmeAIII	GCCGAG	2 cut(s)	60, 249
NruI	TCGCGA	1 cut(s)	290
NspV	TTCGAA	1 cut(s)	458
OliI	CACNNNNGTG	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PfeI	GAWTC	2 cut(s)	278, 378
PkrI	GCNGC	2 cut(s)	154, 454
PleI	GAGTC	2 cut(s)	33, 83
PpsI	GAGTC	2 cut(s)	33, 83
Psp124BI	GAGCTC	2 cut(s)	12, 312
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	130, 201
RruI	TCGCGA	1 cut(s)	290
RseI	CAYNNNNRTG	3 cut(s)	72, 248, 254
SacI	GAGCTC	2 cut(s)	12, 312
SatI	GCNGC	2 cut(s)	153, 453
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	2 cut(s)	130, 201
SchI	GAGTC	2 cut(s)	34, 83
ScrFI	CCNGG	2 cut(s)	225, 466
SduI	GDGCHC	2 cut(s)	12, 312
SfuI	TTCGAA	1 cut(s)	458
SmiMI	CAYNNNNRTG	3 cut(s)	72, 248, 254
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	426, 470
SsiI	CCGC	8 cut(s)	5, 141, 153, 194, 215, 240, 440, 452
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	2 cut(s)	12, 312
StyD4I	CCNGG	2 cut(s)	223, 464
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	2 cut(s)	114, 479
TaqI	TCGA	5 cut(s)	28, 276, 329, 402, 458
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	2 cut(s)	426, 470
TauI	GCSGC	2 cut(s)	155, 455
TfiI	GAWTC	2 cut(s)	278, 378
TspGWI	ACGGA	2 cut(s)	62, 503
XbaI	TCTAGA	1 cut(s)	97
XspI	CTAG	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.