RLG00000030880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001576
Physical Location & Seq
Forward (+)
408855 .. 409629
775 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030880

Sequence Viewer

Length: 510 bp
ATGCTATCAATCGACTCAAGTCTTCAGACAAAAACTGAAGAGAAACCGCATCCGCCTCCCTCTCAAACTCTCAATCTCTTCCTTCAAACAGCAAAGTGCAAACCGTTAATCACGACCACCACCTCCGATTCCCAAGTCCTCTCTTCGTCTCAAAGCCCTCTCCGCGCCGGTACCACCACCACCTCCTTGGTCGGCGAGGCCTCCGTCTCGATCTGCGAGGCTTGGTGGACGGCTGCGTCTCGATCTGCAATGCTTGGTGGACGGCTACATCTCGATCTATTAGGCTTGGTGAATGAAGCAGTCTCGATCTACAAGGCTTGGGTTGTCTCAACAGCTTCGTGTTCAGCCGCCGGTTCAATCACCACCACCACTTCTGATGCTGAAGATCGAAGATTCTCAGAGCAAAAACAGAGACTGAAGATCTCCTCAGACTTCAGAGCTGTAAAAATGGTGACGTTGGCTTTAATCTACACCTATCCAGTTGGCGAGGTTCTTTGTTTGGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.13

Weight (kDa)

7.66

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 235
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AccII CGCG 1 cut(s) 165
AciI CCGC 4 cut(s) 47, 53, 163, 348
AcuI CTGAAG 5 cut(s) 8, 57, 402, 418, 437
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 2 cut(s) 86, 357
AluBI AGCT 2 cut(s) 335, 440
AluI AGCT 2 cut(s) 335, 440
Alw26I GTCTC 6 cut(s) 153, 211, 243, 307, 331, 406
AlwNI CAGNNNCTG 1 cut(s) 415
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 233
Asp718I GGTACC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 167
AsuHPI GGTGA 3 cut(s) 301, 352, 463
BanI GGYRCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 220
BceAI ACGGC 2 cut(s) 246, 278
BcoDI GTCTC 6 cut(s) 153, 211, 243, 307, 331, 406
BglII AGATCT 1 cut(s) 420
BisI GCNGC 2 cut(s) 234, 348
BlsI GCNGC 2 cut(s) 235, 349
BmiI GGNNCC 1 cut(s) 172
BmsI GCATC 2 cut(s) 58, 367
BoxI GACNNNNGTC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 186
Bse118I RCCGGY 2 cut(s) 167, 350
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 411, 441
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 415
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 200
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 2 cut(s) 168, 351
BsmAI GTCTC 6 cut(s) 153, 211, 243, 307, 331, 406
BsmBI CGTCTC 3 cut(s) 153, 211, 243
BsnI GGCC 1 cut(s) 200
Bsp143I GATC 6 cut(s) 210, 242, 274, 306, 385, 420
BspACI CCGC 4 cut(s) 47, 53, 163, 348
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 410, 440
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 2 cut(s) 167, 350
BsrI ACTGG 1 cut(s) 479
BssAI RCCGGY 2 cut(s) 167, 350
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 6 cut(s) 210, 242, 274, 306, 385, 420
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 3 cut(s) 33, 83, 148
BstDEI CTNAG 2 cut(s) 397, 427
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 6 cut(s) 213, 245, 277, 309, 388, 423
BstMAI GTCTC 6 cut(s) 153, 211, 243, 307, 331, 406
BstMBI GATC 6 cut(s) 210, 242, 274, 306, 385, 420
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstPAI GACNNNNGTC 1 cut(s) 18
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 420
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 420
BsuRI GGCC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 415
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 2 cut(s) 167, 350
CseI GACGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 171
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 2 cut(s) 397, 427
DpnI GATC 6 cut(s) 212, 244, 276, 308, 387, 422
DpnII GATC 6 cut(s) 210, 242, 274, 306, 385, 420
DrdI GACNNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 33, 83, 148
EarI CTCTTC 3 cut(s) 33, 83, 148
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 200
Eco57I CTGAAG 5 cut(s) 8, 57, 402, 418, 437
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 3 cut(s) 153, 211, 243
Fnu4HI GCNGC 2 cut(s) 234, 348
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 2 cut(s) 234, 348
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 234, 348
HaeIII GGCC 1 cut(s) 200
HapII CCGG 2 cut(s) 168, 351
HgaI GACGC 1 cut(s) 225
HhaI GCGC 1 cut(s) 167
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 3 cut(s) 14, 128, 393
HpaII CCGG 2 cut(s) 168, 351
HphI GGTGA 3 cut(s) 301, 352, 463
Hpy166II GTNNAC 2 cut(s) 228, 260
Hpy188I TCNGA 6 cut(s) 27, 127, 376, 400, 430, 437
Hpy188III TCNNGA 5 cut(s) 112, 208, 240, 272, 304
Hpy8I GTNNAC 2 cut(s) 228, 260
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 2 cut(s) 99, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 397, 427
HpySE526I ACGT 1 cut(s) 455
HspAI GCGC 1 cut(s) 165
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 6 cut(s) 210, 242, 274, 306, 385, 420
LpnPI CCDG 3 cut(s) 181, 364, 492
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 58, 367
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 451
MalI GATC 6 cut(s) 212, 244, 276, 308, 387, 422
MboI GATC 6 cut(s) 210, 242, 274, 306, 385, 420
MboII GAAGA 7 cut(s) 14, 50, 70, 135, 395, 402, 430
MflI RGATCY 1 cut(s) 420
MlyI GAGTC 1 cut(s) 8
MseI TTAA 2 cut(s) 107, 464
MspI CCGG 2 cut(s) 168, 351
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 6 cut(s) 210, 242, 274, 306, 385, 420
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 451
PceI AGGCCT 1 cut(s) 200
PfeI GAWTC 2 cut(s) 128, 393
PkrI GCNGC 2 cut(s) 235, 349
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PshAI GACNNNNGTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 107, 464
SatI GCNGC 2 cut(s) 234, 348
Sau3AI GATC 6 cut(s) 210, 242, 274, 306, 385, 420
SchI GAGTC 1 cut(s) 8
SetI ASST 7 cut(s) 125, 185, 337, 442, 458, 476, 492
SfaNI GCATC 2 cut(s) 58, 367
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 4 cut(s) 47, 53, 163, 348
StuI AGGCCT 1 cut(s) 200
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 1 cut(s) 458
TaqI TCGA 6 cut(s) 12, 209, 241, 273, 305, 388
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 128, 393
Tru1I TTAA 2 cut(s) 107, 464
Tru9I TTAA 2 cut(s) 107, 464
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.