AT3G49830

Belongs to the RuvB family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18482249 .. 18483980
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49830.1

Sequence Viewer

Length: 1422 bp
ATGGCAGAACTAAGGTTATCAGAAACTCGAGACTTAACTAGGATCGAAAGAATCGGAGCACACTCACACATACGAGGTTTAGGTCTCGACTCAGTACTCGAGCCACGAGCCGTATCCGAAGGAATGGTTGGTCAAATCAAAGCACGTAAAGCCGCCGGAGTAACCCTCGAGTTGATCAGAGACGGCAAAATCTCGGGTCGGGCTATACTTATAGCGGGTCAACCCGGAACGGGTAAAATCGCAATAGCAATGGGTATAGCAAAATCACTTGGACAAGAAACACCATTCACTATGATTGCAGGAAGTGAGATCTTTTCTTTAGAGATGTCAAAGACTGAAGCTTTAACTCAAGCTTTTCGTAAAGCTATTGGTGTTAGGATCAAAGAAGAGACTGACGTGATAGAAGGAGAAGTTGTGACGATTTCGATTGATAGACCTGCTTCTTCTGGTGGTTCTGTGAAGAAGACTGGGAAGATAACAATGAAGACGACTGATATGGAATCTAATTTTGATTTGGGATGGAAATTGATTGAGCCATTGGATAAGGAGAAAGTACAGAGTGGTGATGTTATTGTTTTGGATAGGTTTTGTGGGAAGATTACTAAGCTTGGAAGATCTTTTACGAGGTCTAGAGATTTTGATGTTATGGGTTCAAAGACTAAGTTTGTGCAGTGCCCTGAAGGTGAGCTTGAGAAGAGGAAGGAGGTTTTGCATTCTGTCACACTTCATGAGATTGATGTTATTAATAGCAGGACTCAAGGGTATCTAGCCCTCTTCACAGGTGATACAGGCGAGATTCGTTCAGAAACCCGAGAGCAAAGCGATACTAAAGTGGCAGAGTGGAGAGAAGAAGGGAAAGCTGAAATAGTACCTGGTGTTCTCTTCATTGATGAAGTCCATATGCTTGATATCGAATGCTTCTCTTTCCTGAATAGAGCTCTCGAAAACGATATGTCACCAATCCTGGTCGTGGCTACAAACAGAGGAATGACAACAATCCGAGGAACAAACCAGATATCAGCACATGGGATCCCAATCGATTTTCTTGACCGTCTTCTTATTATCACAACACAGCCTTACACACAAGACGAGATCAGAAATATTTTAGAGATCCGTTGCCAAGAAGAGGATGTGGAGATGAACGAGGAAGCGAAACAGCTTCTGACTTTGATCGGATGTAATACCTCGCTTAGGTACGCGATTCATCTAATCAATGCAGCTGCCCTAGCTTGCCTGAAACGTAAAGGGAAAGTCGTAGAGATTCAGGACATTGAGAGAGTTTATAGATTGTTTTTAGACACCAAGAGATCGATGCAGTACTTGGTTGAGCATGAGAGCGAGTACTTGTTTAGCGTGCCTATAAAAAACACACAGGAGGCTACTGCAGGAGAAGAAACAGAACACGAGGCCATGGAAGTTTGA

Protein Analysis

473

Amino Acids

52.7

Weight (kDa)

5.41

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP49 PF06068 17 - 362 3.7e-166 TIP49 P-loop domain
TIP49_C PF17856 368 - 433 4.1e-27 TIP49 AAA-lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 445
AccII CGCG 1 cut(s) 1199
AciI CCGC 2 cut(s) 153, 215
AclWI GGATC 5 cut(s) 50, 386, 1024, 1037, 1105
AcuI CTGAAG 2 cut(s) 357, 699
AfaI GTAC 6 cut(s) 96, 555, 870, 1196, 1319, 1343
AfiI CCNNNNNNNGG 4 cut(s) 230, 970, 1126, 1191
AgsI TTSAA 1 cut(s) 654
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 2 cut(s) 871, 963
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
Alw21I GWGCWC 2 cut(s) 61, 940
Alw26I GTCTC 4 cut(s) 24, 89, 174, 383
AlwI GGATC 5 cut(s) 50, 386, 1024, 1037, 1105
AlwNI CAGNNNCTG 1 cut(s) 1162
Ama87I CYCGRG 5 cut(s) 27, 98, 167, 193, 810
AoxI GGCC 1 cut(s) 1407
ApeKI GCWGC 2 cut(s) 1217, 1220
AseI ATTAAT 1 cut(s) 744
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 4 cut(s) 575, 695, 794, 948
AvaI CYCGRG 5 cut(s) 27, 98, 167, 193, 810
BaeGI GKGCMC 1 cut(s) 677
BaeI ACNNNNGTAYC 2 cut(s) 816, 849
BamHI GGATCC 1 cut(s) 1029
BanII GRGCYC 1 cut(s) 940
BarI GAAGNNNNNNTAC 2 cut(s) 604, 636
BauI CACGAG 2 cut(s) 105, 1403
BbsI GAAGAC 3 cut(s) 470, 491, 1046
Bbv12I GWGCWC 2 cut(s) 61, 940
BbvI GCAGC 2 cut(s) 1207, 1229
BccI CCATC 1 cut(s) 513
BceAI ACGGC 2 cut(s) 95, 199
BciT130I CCWGG 2 cut(s) 873, 965
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 1 cut(s) 174
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 4 cut(s) 24, 89, 174, 383
BfaI CTAG 4 cut(s) 39, 630, 767, 1226
BfmI CTRYAG 1 cut(s) 1383
BfuAI ACCTGC 1 cut(s) 445
BfuI GTATCC 1 cut(s) 124
BglII AGATCT 2 cut(s) 309, 614
BisI GCNGC 3 cut(s) 153, 1218, 1221
BlsI GCNGC 3 cut(s) 154, 1219, 1222
BmcAI AGTACT 3 cut(s) 96, 1319, 1343
Bme1390I CCNGG 3 cut(s) 225, 873, 965
BmeT110I CYCGRG 5 cut(s) 27, 98, 167, 193, 810
BmgBI CACGTC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 1031
BmrFI CCNGG 3 cut(s) 225, 873, 965
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 1 cut(s) 1302
BmuI ACTGGG 1 cut(s) 477
BpiI GAAGAC 3 cut(s) 470, 491, 1046
BplI GAGNNNNNCTC 2 cut(s) 150, 182
Bpu10I CCTNAGC 1 cut(s) 1190
BpuEI CTTGAG 3 cut(s) 333, 710, 741
BpuMI CCSGG 1 cut(s) 225
Bsa29I ATCGAT 2 cut(s) 1038, 1310
BsaAI YACGTR 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 1034
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 1000, 1410
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 970, 1126, 1191
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 1034
BseBI CCWGG 2 cut(s) 873, 965
BseCI ATCGAT 2 cut(s) 1038, 1310
BseDI CCNNGG 2 cut(s) 1000, 1410
BseGI GGATG 3 cut(s) 524, 1135, 1181
BseJI GATNNNNATC 1 cut(s) 1034
BseLI CCNNNNNNNGG 4 cut(s) 230, 970, 1126, 1191
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 472
BseSI GKGCMC 1 cut(s) 677
BseXI GCAGC 2 cut(s) 1207, 1229
BsgI GTGCAG 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 1199
BshFI GGCC 1 cut(s) 1409
BshVI ATCGAT 2 cut(s) 1038, 1310
BsiHKAI GWGCWC 2 cut(s) 61, 940
BsiHKCI CYCGRG 5 cut(s) 27, 98, 167, 193, 810
BsiSI CCGG 2 cut(s) 156, 225
BslI CCNNNNNNNGG 4 cut(s) 230, 970, 1126, 1191
BsmAI GTCTC 4 cut(s) 24, 89, 174, 383
BsmBI CGTCTC 1 cut(s) 174
BsmI GAATGC 2 cut(s) 712, 920
BsnI GGCC 1 cut(s) 1409
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 5 cut(s) 27, 98, 167, 193, 810
Bsp1286I GDGCHC 3 cut(s) 61, 677, 940
Bsp19I CCATGG 1 cut(s) 1410
BspACI CCGC 2 cut(s) 153, 215
BspANI GGCC 1 cut(s) 1409
BspCNI CTCAG 1 cut(s) 104
BspDI ATCGAT 2 cut(s) 1038, 1310
BspFNI CGCG 1 cut(s) 1199
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 1 cut(s) 1031
BspMAI CTGCAG 1 cut(s) 1387
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 5 cut(s) 50, 386, 1024, 1037, 1105
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 2 cut(s) 1000, 1410
BssSI CACGAG 2 cut(s) 105, 1403
BssT1I CCWWGG 1 cut(s) 1410
Bst2BI CACGAG 2 cut(s) 105, 1403
Bst2UI CCWGG 2 cut(s) 873, 965
Bst4CI ACNGT 1 cut(s) 1052
Bst6I CTCTTC 5 cut(s) 381, 689, 779, 887, 1119
BstBAI YACGTR 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 1231, 1355
BstDEI CTNAG 5 cut(s) 11, 91, 603, 660, 1190
BstDSI CCRYGG 1 cut(s) 1410
BstENI CCTNNNNNAGG 1 cut(s) 1189
BstF5I GGATG 3 cut(s) 524, 1135, 1181
BstFNI CGCG 1 cut(s) 1199
BstMAI GTCTC 4 cut(s) 24, 89, 174, 383
BstMWI GCNNNNNNNGC 2 cut(s) 149, 1226
BstNI CCWGG 2 cut(s) 873, 965
BstSCI CCNGG 3 cut(s) 223, 871, 963
BstSFI CTRYAG 1 cut(s) 1383
BstSLI GKGCMC 1 cut(s) 677
BstUI CGCG 1 cut(s) 1199
BstV1I GCAGC 2 cut(s) 1207, 1229
BstV2I GAAGAC 3 cut(s) 470, 491, 1046
BstX2I RGATCY 4 cut(s) 309, 614, 1029, 1110
BstYI RGATCY 4 cut(s) 309, 614, 1029, 1110
Bsu15I ATCGAT 2 cut(s) 1038, 1310
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 1409
BsuTUI ATCGAT 2 cut(s) 1038, 1310
BtgI CCRYGG 1 cut(s) 1410
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 3 cut(s) 524, 1135, 1181
BtsI GCAGTG 1 cut(s) 677
BtsIMutI CAGTG 1 cut(s) 677
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 1231, 1355
CaiI CAGNNNCTG 1 cut(s) 1162
CciI TCATGA 1 cut(s) 727
ClaI ATCGAT 2 cut(s) 1038, 1310
CsiI ACCWGGT 1 cut(s) 871
Csp6I GTAC 6 cut(s) 95, 554, 869, 1195, 1318, 1342
CviAII CATG 4 cut(s) 728, 1025, 1331, 1411
CviQI GTAC 6 cut(s) 95, 554, 869, 1195, 1318, 1342
DdeI CTNAG 5 cut(s) 11, 91, 603, 660, 1190
Eam1104I CTCTTC 5 cut(s) 381, 689, 779, 887, 1119
EarI CTCTTC 5 cut(s) 381, 689, 779, 887, 1119
Ecl136II GAGCTC 1 cut(s) 938
Eco130I CCWWGG 1 cut(s) 1410
Eco24I GRGCYC 1 cut(s) 940
Eco31I GGTCTC 1 cut(s) 89
Eco32I GATATC 2 cut(s) 910, 1017
Eco53kI GAGCTC 1 cut(s) 938
Eco57I CTGAAG 2 cut(s) 357, 699
Eco88I CYCGRG 5 cut(s) 27, 98, 167, 193, 810
EcoICRI GAGCTC 1 cut(s) 938
EcoNI CCTNNNNNAGG 1 cut(s) 1189
EcoRII CCWGG 2 cut(s) 871, 963
EcoRV GATATC 2 cut(s) 910, 1017
EcoT14I CCWWGG 1 cut(s) 1410
EcoT38I GRGCYC 1 cut(s) 940
ErhI CCWWGG 1 cut(s) 1410
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 4 cut(s) 731, 1028, 1334, 1414
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FatI CATG 4 cut(s) 727, 1024, 1330, 1410
FauI CCCGC 1 cut(s) 208
FauNDI CATATG 1 cut(s) 900
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 153, 1218, 1221
FokI GGATG 3 cut(s) 531, 1142, 1188
FriOI GRGCYC 1 cut(s) 940
Fsp4HI GCNGC 3 cut(s) 153, 1218, 1221
FspBI CTAG 4 cut(s) 39, 630, 767, 1226
GluI GCNGC 3 cut(s) 153, 1218, 1221
HaeIII GGCC 1 cut(s) 1409
HapII CCGG 2 cut(s) 156, 225
Hin1II CATG 4 cut(s) 731, 1028, 1334, 1414
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HindIII AAGCTT 3 cut(s) 339, 351, 605
HinfI GANTC 7 cut(s) 51, 89, 500, 754, 796, 1201, 1261
HpaII CCGG 2 cut(s) 156, 225
HphI GGTGA 4 cut(s) 575, 695, 794, 948
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 9 cut(s) 22, 56, 118, 179, 805, 1001, 1097, 1164, 1175
Hpy188III TCNNGA 8 cut(s) 29, 86, 630, 728, 928, 941, 1046, 1265
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 5 cut(s) 113, 398, 674, 694, 845
HpyCH4III ACNGT 1 cut(s) 1052
HpyCH4IV ACGT 3 cut(s) 145, 396, 1240
HpyCH4V TGCA 6 cut(s) 299, 670, 712, 1217, 1315, 1385
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 1226
HpyF3I CTNAG 5 cut(s) 11, 91, 603, 660, 1190
HpySE526I ACGT 3 cut(s) 145, 396, 1240
Hsp92II CATG 4 cut(s) 731, 1028, 1334, 1414
Ksp22I TGATCA 1 cut(s) 174
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 1207, 1229
LweI GCATC 1 cut(s) 1302
MabI ACCWGGT 1 cut(s) 871
MaeI CTAG 4 cut(s) 39, 630, 767, 1226
MaeII ACGT 3 cut(s) 145, 396, 1240
MaeIII GTNAC 4 cut(s) 160, 415, 718, 954
MflI RGATCY 4 cut(s) 309, 614, 1029, 1110
MhlI GDGCHC 3 cut(s) 61, 677, 940
MluCI AATT 2 cut(s) 505, 524
MlyI GAGTC 2 cut(s) 83, 748
MseI TTAA 3 cut(s) 35, 344, 744
MspA1I CMGCKG 1 cut(s) 1220
MspI CCGG 2 cut(s) 156, 225
MspR9I CCNGG 3 cut(s) 225, 873, 965
Mva1269I GAATGC 2 cut(s) 712, 920
MvaI CCWGG 2 cut(s) 873, 965
MvnI CGCG 1 cut(s) 1199
MwoI GCNNNNNNNGC 2 cut(s) 149, 1226
NciI CCSGG 1 cut(s) 225
NcoI CCATGG 1 cut(s) 1410
NdeI CATATG 1 cut(s) 900
NlaIII CATG 4 cut(s) 731, 1028, 1334, 1414
NlaIV GGNNCC 1 cut(s) 1031
NmuCI GTSAC 3 cut(s) 415, 718, 954
PaeR7I CTCGAG 3 cut(s) 27, 98, 167
PagI TCATGA 1 cut(s) 727
PctI GAATGC 2 cut(s) 712, 920
PfeI GAWTC 5 cut(s) 51, 500, 796, 1201, 1261
PkrI GCNGC 3 cut(s) 154, 1219, 1222
PleI GAGTC 2 cut(s) 83, 748
PpsI GAGTC 2 cut(s) 83, 748
Ppu21I YACGTR 1 cut(s) 146
PshBI ATTAAT 1 cut(s) 744
Psp124BI GAGCTC 1 cut(s) 940
Psp6I CCWGG 2 cut(s) 871, 963
PspGI CCWGG 2 cut(s) 871, 963
PspN4I GGNNCC 1 cut(s) 1031
PspXI VCTCGAGB 2 cut(s) 98, 167
PsrI GAACNNNNNNTAC 2 cut(s) 861, 893
PstI CTGCAG 1 cut(s) 1387
PstNI CAGNNNCTG 1 cut(s) 1162
PsuI RGATCY 4 cut(s) 309, 614, 1029, 1110
PvuII CAGCTG 1 cut(s) 1220
RsaI GTAC 6 cut(s) 96, 555, 870, 1196, 1319, 1343
RsaNI GTAC 6 cut(s) 95, 554, 869, 1195, 1318, 1342
SacI GAGCTC 1 cut(s) 940
SaqAI TTAA 3 cut(s) 35, 344, 744
SatI GCNGC 3 cut(s) 153, 1218, 1221
ScaI AGTACT 3 cut(s) 96, 1319, 1343
SchI GAGTC 2 cut(s) 83, 748
ScrFI CCNGG 3 cut(s) 225, 873, 965
SduI GDGCHC 3 cut(s) 61, 677, 940
SexAI ACCWGGT 1 cut(s) 871
SfaNI GCATC 1 cut(s) 1302
SfcI CTRYAG 1 cut(s) 1383
Sfr274I CTCGAG 3 cut(s) 27, 98, 167
SlaI CTCGAG 3 cut(s) 27, 98, 167
SmlI CTYRAG 6 cut(s) 27, 98, 167, 348, 689, 756
SmoI CTYRAG 6 cut(s) 27, 98, 167, 348, 689, 756
Sse9I AATT 2 cut(s) 505, 524
SsiI CCGC 2 cut(s) 153, 215
SspI AATATT 1 cut(s) 1102
SspMI CTAG 4 cut(s) 39, 630, 767, 1226
SstI GAGCTC 1 cut(s) 940
StyD4I CCNGG 3 cut(s) 223, 871, 963
StyI CCWWGG 1 cut(s) 1410
TaaI ACNGT 1 cut(s) 1052
TaiI ACGT 3 cut(s) 148, 399, 1243
TasI AATT 2 cut(s) 505, 524
TatI WGTACW 4 cut(s) 94, 553, 1317, 1341
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 5 cut(s) 51, 500, 796, 1201, 1261
Tru1I TTAA 3 cut(s) 35, 344, 744
Tru9I TTAA 3 cut(s) 35, 344, 744
TscAI CASTG 1 cut(s) 677
TseFI GTSAC 3 cut(s) 415, 718, 954
TseI GCWGC 2 cut(s) 1217, 1220
Tsp45I GTSAC 3 cut(s) 415, 718, 954
TspDTI ATGAA 6 cut(s) 497, 716, 874, 906, 1154, 1193
TspGWI ACGGA 1 cut(s) 1103
TspRI CASTG 1 cut(s) 677
VspI ATTAAT 1 cut(s) 744
XagI CCTNNNNNAGG 1 cut(s) 1189
XbaI TCTAGA 1 cut(s) 629
XhoI CTCGAG 3 cut(s) 27, 98, 167
XspI CTAG 4 cut(s) 39, 630, 767, 1226
ZrmI AGTACT 3 cut(s) 96, 1319, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.