Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

2676275 .. 2679256

Gene Structure 2982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0021300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCTTCCCATTGGTGTAAAGGAATCTGGTCATCAGATCTGAGGAAGAATGTGCATCTGGTGTTGAAGAAGTGTGAGAGCCCATCACCACGGTCACCTCCTCGGACTCGACCTTGGCCGCAATGGTCGTCGCCCATTTCCTCATCTCCGCCTGTGCAGACATTGATTTTCTGTGCCATGATTTGCAAGAAGGAAGATATCTTGCCGAACTATGATTTCCAGCCCATCCGTCCCATCACTGGAGCCTCTTCGCAATCCCCAAGTTTTGATGCTACACCTAATCTCGGAGGTGGAGGAGGATCAACTAGGGCTTGGAACTCCCAAGAGTCCAAGTCCAACACCAATACTCCCATCAGAAATTATGGTTCTGTGGATTCCTTCGAACGTTCAAAAGATGTTGTGGAGAAGGACCGAAATGTTCCTGATGCTACAATTATATCAGAGATTGACCACACCATGAAGAAGTATGCTGATAATTTACTTCAAGTTATGGAAGGTATTAGTGCACGACTAACACAACTTGAGAGCAGAACCCGCCACCTTGAGAATTCTGTTGATGATTTGAAGGTATCTGTGGGAAACAATCATGGAAATGCTGATGGAAAGATGAGACAAATGGAGAATATTCTTAGAGATGTGCAAACAGGTGTTCAGGATTTGAAGGATAAGCAATCAATAGTAGAGGCTCAGAAATCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

233

Amino Acids

25.99

Weight (kDa)

8.64

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	119, 149, 535
AclI	AACGTT	1 cut(s)	385
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	239, 284
AgsI	TTSAA	5 cut(s)	67, 390, 485, 565, 661
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	1 cut(s)	604
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	1 cut(s)	116
ApaLI	GTGCAC	1 cut(s)	504
ApoI	RAATTY	1 cut(s)	547
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	78, 87
AsuII	TTCGAA	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	508
BccI	CCATC	5 cut(s)	91, 233, 242, 359, 593
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	2 cut(s)	306, 700
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	244
BmsI	GCATC	3 cut(s)	64, 259, 415
BpmI	CTGGAG	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	542, 563
BsaJI	CCNNGG	3 cut(s)	89, 101, 113
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 284
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	128
BseDI	CCNNGG	3 cut(s)	89, 101, 113
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	239, 284
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	32, 701
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	2 cut(s)	90, 309
BseSI	GKGCMC	1 cut(s)	508
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	239, 284
BsmAI	GTCTC	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	118
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	83, 508
Bsp143I	GATC	2 cut(s)	37, 299
BspACI	CCGC	3 cut(s)	119, 149, 535
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	2 cut(s)	33, 700
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	3 cut(s)	89, 101, 113
BssMI	GATC	2 cut(s)	37, 299
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	41, 629, 687
BstDSI	CCRYGG	1 cut(s)	89
BstEII	GGTNACC	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	2 cut(s)	40, 302
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	2 cut(s)	37, 299
BstMWI	GCNNNNNNNGC	1 cut(s)	534
BstPI	GGTNACC	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	409
CviAII	CATG	3 cut(s)	178, 457, 587
CviJI	RGCY	6 cut(s)	81, 118, 223, 245, 311, 686
CviKI_1	RGCY	6 cut(s)	81, 118, 223, 245, 311, 686
DdeI	CTNAG	3 cut(s)	41, 629, 687
DpnI	GATC	2 cut(s)	39, 301
DpnII	GATC	2 cut(s)	37, 299
EaeI	YGGCCR	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	409
Eco91I	GGTNACC	1 cut(s)	93
EcoO65I	GGTNACC	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	3 cut(s)	181, 460, 590
FaiI	YATR	8 cut(s)	179, 213, 363, 437, 458, 468, 491, 588
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	3 cut(s)	177, 456, 586
FauI	CCCGC	1 cut(s)	542
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	306, 700
GluI	GCNGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	181, 460, 590
HinfI	GANTC	4 cut(s)	24, 106, 326, 374
HphI	GGTGA	2 cut(s)	78, 87
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	7 cut(s)	37, 42, 105, 287, 356, 442, 690
Hpy188III	TCNNGA	2 cut(s)	422, 653
Hpy8I	GTNNAC	1 cut(s)	506
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	7 cut(s)	15, 184, 388, 400, 488, 559, 655
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	5 cut(s)	55, 157, 186, 506, 640
HpyF10VI	GCNNNNNNNGC	1 cut(s)	534
HpyF3I	CTNAG	3 cut(s)	41, 629, 687
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	3 cut(s)	181, 460, 590
Kzo9I	GATC	2 cut(s)	37, 299
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	8 cut(s)	13, 44, 165, 225, 233, 435, 630, 638
LweI	GCATC	3 cut(s)	64, 259, 415
MaeI	CTAG	2 cut(s)	306, 700
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	2 cut(s)	39, 301
MboI	GATC	2 cut(s)	37, 299
MboII	GAAGA	5 cut(s)	58, 79, 206, 240, 472
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	83, 508
MluCI	AATT	4 cut(s)	358, 432, 475, 547
MlyI	GAGTC	2 cut(s)	100, 335
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	9 cut(s)	36, 108, 111, 151, 256, 281, 287, 290, 676
MslI	CAYNNNNRTG	1 cut(s)	591
MwoI	GCNNNNNNNGC	1 cut(s)	534
NdeII	GATC	2 cut(s)	37, 299
NlaIII	CATG	3 cut(s)	181, 460, 590
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	93
NspV	TTCGAA	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	24, 374
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	100, 334
PpsI	GAGTC	2 cut(s)	100, 334
Psp1406I	AACGTT	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	591
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	37, 299
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	2 cut(s)	100, 335
SduI	GDGCHC	2 cut(s)	83, 508
SetI	ASST	9 cut(s)	100, 115, 280, 292, 388, 499, 543, 570, 649
SfaNI	GCATC	3 cut(s)	64, 259, 415
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	2 cut(s)	521, 542
SmoI	CTYRAG	2 cut(s)	521, 542
Sse9I	AATT	4 cut(s)	358, 432, 475, 547
SsiI	CCGC	3 cut(s)	119, 149, 535
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	2 cut(s)	306, 700
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	2 cut(s)	109, 381
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	4 cut(s)	358, 432, 475, 547
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	24, 374
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	244
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	547
XspI	CTAG	2 cut(s)	306, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.