AT5G67630

Belongs to the RuvB family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
26967378 .. 26969400
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67630.1

Sequence Viewer

Length: 1410 bp
ATGGCGGAACTAAAGCTATCAGAGAGTCGGGACTTAACCAGAGTCGAGCGAATCGGCGCACACTCACACATCAGAGGACTAGGTCTCGACTCTGCCCTCGAGCCGCGAGCTGTTTCCGAAGGTATGGTCGGTCAAGTGAAGGCGCGTAAAGCCGCCGGTGTAATCCTTCAGATGATTAGAGAAGGGAAAATCGCGGGTCGGGCTATTCTAATAGCGGGTCAACCCGGAACGGGTAAGACAGCGATTGCAATGGGTATGGCGAAATCTCTTGGCTTGGAAACTCCTTTTGCGATGATTGCAGGAAGTGAAATTTTCTCATTAGAGATGTCAAAGACAGAAGCTTTGACTCAGTCTTTTCGTAAAGCGATTGGTGTTAGGATCAAAGAAGAGACAGAGGTTATTGAAGGAGAAGTTGTTGAGGTTCAGATTGATAGGCCTGCTTCTTCTGGTGTTGCTTCCAAGTCAGGGAAGATGACTATGAAAACGACTGATATGGAAACTGTGTATGATATGGGAGCTAAGATGATTGAGGCTTTGAACAAGGAGAAAGTGCAGAGTGGTGATGTTATTGCCATTGATAAAGCTACTGGGAAGATTACTAAGCTTGGAAGATCGTTTTCGAGGTCTCGTGATTATGATGCTATGGGTGCGCAGACCAAGTTTGTGCAGTGCCCTGAAGGTGAGTTGCAGAAGAGGAAAGAGGTTGTACATTGTGTCACTCTTCACGAGATTGATGTTATCAACAGCAGGACACAAGGGTTTCTTGCCCTTTTCACTGGCGATACTGGAGAAATCCGATCAGAAGTCCGGGAACAAATTGATACAAAAGTAGCTGAATGGAGAGAAGAAGGAAAAGCAGAGATAGTTCCCGGAGTTCTCTTCATTGATGAAGTCCACATGCTCGACATCGAATGCTTCTCATTCCTTAACCGAGCTCTAGAAAACGAAATGTCACCAATCCTTGTGGTGGCAACAAACCGAGGAGTGACGACAATCCGTGGCACAAACCAGAAATCACCACACGGGATCCCGATTGATCTCCTTGACCGTCTTCTCATCATCACTACCCAACCTTACACAGACGATGACATAAGGAAGATATTAGAAATCCGTTGCCAAGAGGAAGACGTTGAGATGAACGAAGAGGCCAAACAGCTTTTGACATTGATCGGACGTGATACATCTCTAAGGTATGCGATTCATCTTATAACCGCAGCTGCATTGTCATGCCAGAAACGGAAAGGGAAAGTCGTGGAGGTTGAGGATATTCAGAGAGTTTACAGACTGTTCTTGGATGTGAGGAGATCGATGCAGTATCTTGTTGAGTATCAGAGTCAGTATATGTTCAGTGAACCAATCAAAAACGATGAAGCTGCTGCAGAAGACGAACAAGATGCTATGCAGATCTGA

Protein Analysis

469

Amino Acids

52.11

Weight (kDa)

5.43

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP49 PF06068 17 - 361 1.7e-167 TIP49 P-loop domain
DnaB_C PF03796 61 - 193 1.4e-07 DnaB-like helicase C terminal domain
TIP49_C PF17856 367 - 432 1.3e-26 TIP49 AAA-lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1208
Acc16I TGCGCA 1 cut(s) 651
AccII CGCG 3 cut(s) 106, 145, 194
AciI CCGC 6 cut(s) 5, 104, 153, 194, 215, 1212
AclWI GGATC 3 cut(s) 386, 1021, 1034
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 2 cut(s) 152, 696
AfaI GTAC 1 cut(s) 708
AfiI CCNNNNNNNGG 3 cut(s) 230, 465, 967
AgsI TTSAA 2 cut(s) 404, 538
AjiI CACGTC 1 cut(s) 1175
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 3 cut(s) 89, 383, 630
AlwI GGATC 3 cut(s) 386, 1021, 1034
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 2 cut(s) 434, 1146
ApeKI GCWGC 4 cut(s) 1214, 1217, 1373, 1376
ApoI RAATTY 1 cut(s) 309
ArsI GACNNNNNNTTYG 4 cut(s) 111, 143, 325, 357
AspLEI GCGC 3 cut(s) 59, 145, 652
AsuC2I CCSGG 3 cut(s) 225, 809, 870
AsuHPI GGTGA 4 cut(s) 572, 692, 945, 1008
AvaI CYCGRG 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 674
BaeI ACNNNNGTAYC 2 cut(s) 813, 846
BamHI GGATCC 1 cut(s) 1026
BanII GRGCYC 1 cut(s) 937
BauI CACGAG 2 cut(s) 627, 725
BbsI GAAGAC 3 cut(s) 1043, 1131, 1389
Bbv12I GWGCWC 1 cut(s) 937
BbvI GCAGC 4 cut(s) 1204, 1226, 1360, 1363
BcgI CGANNNNNNTGC 4 cut(s) 1355, 1376, 1389, 1410
BcnI CCSGG 3 cut(s) 225, 809, 870
BcoDI GTCTC 3 cut(s) 89, 383, 630
BfaI CTAG 2 cut(s) 80, 938
BfmI CTRYAG 1 cut(s) 1377
BglII AGATCT 1 cut(s) 1404
BisI GCNGC 6 cut(s) 104, 153, 1215, 1218, 1374, 1377
BlsI GCNGC 6 cut(s) 105, 154, 1216, 1219, 1375, 1378
Bme1390I CCNGG 3 cut(s) 225, 809, 870
BmeT110I CYCGRG 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 1175
BmiI GGNNCC 1 cut(s) 1028
BmrFI CCNGG 3 cut(s) 225, 809, 870
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 3 cut(s) 628, 1299, 1384
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 3 cut(s) 1043, 1131, 1389
BpmI CTGGAG 1 cut(s) 807
BpuMI CCSGG 3 cut(s) 225, 809, 870
Bsa29I ATCGAT 1 cut(s) 1307
BsaI GGTCTC 2 cut(s) 89, 630
BsaJI CCNNGG 2 cut(s) 979, 997
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 465, 967
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 592, 781, 790
Bse3DI GCAATG 1 cut(s) 255
BseCI ATCGAT 1 cut(s) 1307
BseDI CCNNGG 2 cut(s) 979, 997
BseGI GGATG 1 cut(s) 1300
BseLI CCNNNNNNNGG 3 cut(s) 230, 465, 967
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 3 cut(s) 592, 781, 790
BseRI GAGGAG 2 cut(s) 996, 1315
BseSI GKGCMC 1 cut(s) 674
BseXI GCAGC 4 cut(s) 1204, 1226, 1360, 1363
BsgI GTGCAG 2 cut(s) 572, 686
Bsh1236I CGCG 3 cut(s) 106, 145, 194
BshFI GGCC 2 cut(s) 436, 1148
BshVI ATCGAT 1 cut(s) 1307
BsiHKAI GWGCWC 1 cut(s) 937
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 4 cut(s) 156, 225, 808, 870
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 3 cut(s) 230, 465, 967
BsmAI GTCTC 3 cut(s) 89, 383, 630
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 917
BsnI GGCC 2 cut(s) 436, 1148
Bso31I GGTCTC 2 cut(s) 89, 630
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 674, 937
Bsp1407I TGTACA 1 cut(s) 706
Bsp143I GATC 8 cut(s) 378, 611, 797, 1026, 1036, 1167, 1304, 1404
BspACI CCGC 6 cut(s) 5, 104, 153, 194, 215, 1212
BspANI GGCC 2 cut(s) 436, 1148
BspCNI CTCAG 1 cut(s) 361
BspDI ATCGAT 1 cut(s) 1307
BspFNI CGCG 3 cut(s) 106, 145, 194
BspLI GGNNCC 1 cut(s) 1028
BspMAI CTGCAG 1 cut(s) 1381
BspPI GGATC 3 cut(s) 386, 1021, 1034
BspTNI GGTCTC 2 cut(s) 89, 630
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 706
BsrI ACTGG 3 cut(s) 592, 781, 790
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 979, 997
BssMI GATC 8 cut(s) 378, 611, 797, 1026, 1036, 1167, 1304, 1404
BssSI CACGAG 2 cut(s) 627, 725
Bst2BI CACGAG 2 cut(s) 627, 725
Bst4CI ACNGT 3 cut(s) 502, 1049, 1287
Bst6I CTCTTC 5 cut(s) 381, 686, 726, 884, 1137
BstAUI TGTACA 1 cut(s) 706
BstC8I GCNNGC 2 cut(s) 108, 438
BstDEI CTNAG 4 cut(s) 348, 519, 600, 1187
BstDSI CCRYGG 1 cut(s) 997
BstF5I GGATG 1 cut(s) 1300
BstFNI CGCG 3 cut(s) 106, 145, 194
BstHHI GCGC 3 cut(s) 59, 145, 652
BstKTI GATC 8 cut(s) 381, 614, 800, 1029, 1039, 1170, 1307, 1407
BstMAI GTCTC 3 cut(s) 89, 383, 630
BstMBI GATC 8 cut(s) 378, 611, 797, 1026, 1036, 1167, 1304, 1404
BstMWI GCNNNNNNNGC 4 cut(s) 149, 200, 296, 647
BstNSI RCATGY 1 cut(s) 901
BstSCI CCNGG 3 cut(s) 223, 807, 868
BstSFI CTRYAG 1 cut(s) 1377
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 3 cut(s) 106, 145, 194
BstV1I GCAGC 4 cut(s) 1204, 1226, 1360, 1363
BstV2I GAAGAC 3 cut(s) 1043, 1131, 1389
BstX2I RGATCY 2 cut(s) 1026, 1404
BstYI RGATCY 2 cut(s) 1026, 1404
Bsu15I ATCGAT 1 cut(s) 1307
BsuRI GGCC 2 cut(s) 436, 1148
BsuTUI ATCGAT 1 cut(s) 1307
BtgI CCRYGG 1 cut(s) 997
BtgZI GCGATG 1 cut(s) 305
BtrI CACGTC 1 cut(s) 1175
BtsCI GGATG 1 cut(s) 1300
BtsI GCAGTG 1 cut(s) 674
BtsIMutI CAGTG 3 cut(s) 674, 774, 1354
Cac8I GCNNGC 2 cut(s) 108, 438
CfoI GCGC 3 cut(s) 59, 145, 652
Cfr10I RCCGGY 1 cut(s) 155
ClaI ATCGAT 1 cut(s) 1307
Csp6I GTAC 1 cut(s) 707
CspCI CAANNNNNGTGG 2 cut(s) 945, 980
CviAII CATG 2 cut(s) 898, 1227
CviQI GTAC 1 cut(s) 707
DdeI CTNAG 4 cut(s) 348, 519, 600, 1187
DpnI GATC 8 cut(s) 380, 613, 799, 1028, 1038, 1169, 1306, 1406
DpnII GATC 8 cut(s) 378, 611, 797, 1026, 1036, 1167, 1304, 1404
Eam1104I CTCTTC 5 cut(s) 381, 686, 726, 884, 1137
EarI CTCTTC 5 cut(s) 381, 686, 726, 884, 1137
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 935
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 937
Eco31I GGTCTC 2 cut(s) 89, 630
Eco53kI GAGCTC 1 cut(s) 935
Eco57I CTGAAG 2 cut(s) 152, 696
Eco88I CYCGRG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 935
EcoT38I GRGCYC 1 cut(s) 937
FaeI CATG 2 cut(s) 901, 1230
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 897, 1226
FauI CCCGC 2 cut(s) 187, 208
Fnu4HI GCNGC 6 cut(s) 104, 153, 1215, 1218, 1374, 1377
FokI GGATG 1 cut(s) 1307
FriOI GRGCYC 1 cut(s) 937
Fsp4HI GCNGC 6 cut(s) 104, 153, 1215, 1218, 1374, 1377
FspBI CTAG 2 cut(s) 80, 938
FspI TGCGCA 1 cut(s) 651
GlaI GCGC 3 cut(s) 58, 144, 651
GluI GCNGC 6 cut(s) 104, 153, 1215, 1218, 1374, 1377
GsuI CTGGAG 1 cut(s) 807
HaeIII GGCC 2 cut(s) 436, 1148
HapII CCGG 4 cut(s) 156, 225, 808, 870
HhaI GCGC 3 cut(s) 59, 145, 652
Hin1II CATG 2 cut(s) 901, 1230
Hin6I GCGC 3 cut(s) 57, 143, 650
HinP1I GCGC 3 cut(s) 57, 143, 650
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HindIII AAGCTT 2 cut(s) 339, 602
HinfI GANTC 7 cut(s) 25, 42, 51, 89, 346, 1198, 1333
HpaII CCGG 4 cut(s) 156, 225, 808, 870
HphI GGTGA 4 cut(s) 572, 692, 945, 1008
Hpy166II GTNNAC 4 cut(s) 221, 895, 1279, 1352
Hpy188III TCNNGA 6 cut(s) 29, 86, 629, 725, 938, 1030
Hpy8I GTNNAC 4 cut(s) 221, 895, 1279, 1352
HpyAV CCTTC 7 cut(s) 113, 133, 176, 176, 398, 671, 842
HpyCH4III ACNGT 3 cut(s) 502, 1049, 1287
HpyCH4IV ACGT 2 cut(s) 1128, 1174
HpyCH4V TGCA 9 cut(s) 248, 299, 553, 667, 688, 1220, 1312, 1379, 1402
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 200, 296, 647
HpyF3I CTNAG 4 cut(s) 348, 519, 600, 1187
HpySE526I ACGT 2 cut(s) 1128, 1174
Hsp92II CATG 2 cut(s) 901, 1230
HspAI GCGC 3 cut(s) 57, 143, 650
Kzo9I GATC 8 cut(s) 378, 611, 797, 1026, 1036, 1167, 1304, 1404
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 4 cut(s) 1204, 1226, 1360, 1363
LweI GCATC 3 cut(s) 628, 1299, 1384
MaeI CTAG 2 cut(s) 80, 938
MaeII ACGT 2 cut(s) 1128, 1174
MaeIII GTNAC 3 cut(s) 715, 951, 985
MalI GATC 8 cut(s) 380, 613, 799, 1028, 1038, 1169, 1306, 1406
MboI GATC 8 cut(s) 378, 611, 797, 1026, 1036, 1167, 1304, 1404
MflI RGATCY 2 cut(s) 1026, 1404
MhlI GDGCHC 2 cut(s) 674, 937
MluCI AATT 2 cut(s) 309, 816
MlyI GAGTC 5 cut(s) 34, 51, 83, 340, 1342
MseI TTAA 2 cut(s) 35, 927
MslI CAYNNNNRTG 1 cut(s) 1225
MspA1I CMGCKG 1 cut(s) 1217
MspI CCGG 4 cut(s) 156, 225, 808, 870
MspR9I CCNGG 3 cut(s) 225, 809, 870
Mva1269I GAATGC 1 cut(s) 917
MvnI CGCG 3 cut(s) 106, 145, 194
MwoI GCNNNNNNNGC 4 cut(s) 149, 200, 296, 647
NciI CCSGG 3 cut(s) 225, 809, 870
NdeII GATC 8 cut(s) 378, 611, 797, 1026, 1036, 1167, 1304, 1404
NlaIII CATG 2 cut(s) 901, 1230
NlaIV GGNNCC 1 cut(s) 1028
NmuCI GTSAC 3 cut(s) 715, 951, 985
NsbI TGCGCA 1 cut(s) 651
NspI RCATGY 1 cut(s) 901
PaeR7I CTCGAG 1 cut(s) 98
PceI AGGCCT 1 cut(s) 436
PctI GAATGC 1 cut(s) 917
PfeI GAWTC 2 cut(s) 51, 1198
PflFI GACNNNGTC 2 cut(s) 81, 349
PfoI TCCNGGA 2 cut(s) 807, 868
PkrI GCNGC 6 cut(s) 105, 154, 1216, 1219, 1375, 1378
PleI GAGTC 5 cut(s) 33, 50, 83, 340, 1341
PpsI GAGTC 5 cut(s) 33, 50, 83, 340, 1341
PsiI TTATAA 1 cut(s) 1208
Psp124BI GAGCTC 1 cut(s) 937
PspN4I GGNNCC 1 cut(s) 1028
PspXI VCTCGAGB 1 cut(s) 98
PstI CTGCAG 1 cut(s) 1381
PsuI RGATCY 2 cut(s) 1026, 1404
PsyI GACNNNGTC 2 cut(s) 81, 349
PvuII CAGCTG 1 cut(s) 1217
RsaI GTAC 1 cut(s) 708
RsaNI GTAC 1 cut(s) 707
RseI CAYNNNNRTG 1 cut(s) 1225
SacI GAGCTC 1 cut(s) 937
SaqAI TTAA 2 cut(s) 35, 927
SatI GCNGC 6 cut(s) 104, 153, 1215, 1218, 1374, 1377
Sau3AI GATC 8 cut(s) 378, 611, 797, 1026, 1036, 1167, 1304, 1404
SchI GAGTC 5 cut(s) 34, 51, 83, 340, 1342
ScrFI CCNGG 3 cut(s) 225, 809, 870
SduI GDGCHC 2 cut(s) 674, 937
SfaNI GCATC 3 cut(s) 628, 1299, 1384
SfcI CTRYAG 1 cut(s) 1377
Sfr274I CTCGAG 1 cut(s) 98
SgrAI CRCCGGYG 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 1225
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 309, 816
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 6 cut(s) 5, 104, 153, 194, 215, 1212
SspMI CTAG 2 cut(s) 80, 938
SstI GAGCTC 1 cut(s) 937
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 3 cut(s) 223, 807, 868
TaaI ACNGT 3 cut(s) 502, 1049, 1287
TaiI ACGT 2 cut(s) 1131, 1177
TaqI TCGA 7 cut(s) 45, 87, 99, 620, 903, 909, 1307
TaqII GACCGA 1 cut(s) 119
TasI AATT 2 cut(s) 309, 816
TatI WGTACW 1 cut(s) 706
TauI GCSGC 2 cut(s) 106, 155
TfiI GAWTC 2 cut(s) 51, 1198
Tru1I TTAA 2 cut(s) 35, 927
Tru9I TTAA 2 cut(s) 35, 927
TscAI CASTG 3 cut(s) 674, 781, 1354
TseFI GTSAC 3 cut(s) 715, 951, 985
TseI GCWGC 4 cut(s) 1214, 1217, 1373, 1376
Tsp45I GTSAC 3 cut(s) 715, 951, 985
TspDTI ATGAA 6 cut(s) 494, 871, 903, 1151, 1190, 1383
TspGWI ACGGA 3 cut(s) 986, 1100, 1252
TspRI CASTG 3 cut(s) 674, 781, 1354
Tth111I GACNNNGTC 2 cut(s) 81, 349
XapI RAATTY 1 cut(s) 309
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 1 cut(s) 901
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 2 cut(s) 80, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.