Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

21897654 .. 21900199

Gene Structure 2546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGACACCATGGGACCCAGTGTTAAGTAAGTCCAGTGGTCCTGACAGGGAGTTGCAGGAGTGTAAGGAGGTTGTGCATTGCGTCACACTTCATGAGATTGATGTCATCAACAGCAAAACACAAGGATTTCTGGCTCTCTTTACAGGAGATACTGGTGAAATTCATTCAGAAGTGAGAGAACAGATTGACACACAGGTAGCAGAGTGTAGAGGAAGGGAAGGCAGAAATTGTGCCAGGTGTTCTCTTCATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

84

Amino Acids

9.45

Weight (kDa)

5.47

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	14 - 70	1.7e-16	TIP49 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	13, 38
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	13, 38
BciT130I	CCWGG	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	2 cut(s)	13, 38
BmgT120I	GGNCC	2 cut(s)	13, 38
BmiI	GGNNCC	2 cut(s)	14, 15
BmrFI	CCNGG	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	11
BmuI	ACTGGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	8
Bse1I	ACTGG	3 cut(s)	17, 33, 157
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	76
BseNI	ACTGG	3 cut(s)	17, 33, 157
BslFI	GGGAC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	14, 15
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	17, 33, 157
BssECI	CCNNGG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	8
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	8
BtsIMutI	CAGTG	2 cut(s)	24, 40
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	13, 38
CseI	GACGC	1 cut(s)	70
CviAII	CATG	2 cut(s)	9, 92
CviJI	RGCY	1 cut(s)	134
CviKI_1	RGCY	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	13, 38
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	2 cut(s)	12, 95
FaiI	YATR	3 cut(s)	10, 93, 249
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	8, 91
HgaI	GACGC	1 cut(s)	70
Hin1II	CATG	2 cut(s)	12, 95
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	41, 92
HpyAV	CCTTC	2 cut(s)	207, 212
HpyCH4V	TGCA	2 cut(s)	55, 76
Hsp92II	CATG	2 cut(s)	12, 95
KflI	GGGWCCC	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	236
MluCI	AATT	2 cut(s)	159, 226
MnlI	CCTC	2 cut(s)	61, 203
MseI	TTAA	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	8
NlaIII	CATG	2 cut(s)	12, 95
NlaIV	GGNNCC	2 cut(s)	14, 15
NmuCI	GTSAC	1 cut(s)	82
PagI	TCATGA	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	14, 15
PspPI	GGNCC	2 cut(s)	13, 38
PspPPI	RGGWCCY	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	23
Sau96I	GGNCC	2 cut(s)	13, 38
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	3 cut(s)	72, 198, 239
SinI	GGWCC	2 cut(s)	13, 38
Sse9I	AATT	2 cut(s)	159, 226
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	8
TasI	AATT	2 cut(s)	159, 226
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	2 cut(s)	24, 40
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	80, 152, 236
TspRI	CASTG	2 cut(s)	24, 40
VpaK11BI	GGWCC	2 cut(s)	13, 38
XapI	RAATTY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.