Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

21920345 .. 21923459

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGCGGAGAACTGCCTCTTCTTGTTATTGCAACAACACTAGAGGTATGCCTCGTCTTCAGTCTACTCTTGTTTCCTTCAACCATTACTCCTTTGCACTTTTTCATTCCCAAGCTTCAAAGCCTAGGAACACCCAGATTGTAAGAGACCCACCCAAAGTCACTAGTCTCCAGGATGGTTTAAGCTTGTTCAATACTATGCTTCAAATGCGTCCTCTGCCTTCTATTGTCTGTTTCAATAAAATCTTGGGTCAAATTGCTCAATTGAAACATCATTCGGCACCCATCTCTTTGTTTCACCAAATGTGTCTGCTGCGAGTTGTTCCTGATGTTTATACTTTGAACATCATGATCAACTGCTTTTGTCATTTGAACCATATGGGATTCAGCTTGTCTGTGTTGGGAAAGTTCTTCAAATTTGGTTATGAACCAGATGCTACCACCCTCAACACTCTTATCAAGGGTTTTTTCCTTGAGAGTAAAGTCTCTGAGGCAGCAGCACTTTTCGGCAAAATGCTGCTTCAAGGTTGTAAGCCGAATGAGTTTACTTTTGGAACGCTGATAAAGGGCTATTGCATGATGGGAAATAATACTGCAGCTATTCAATTGCTTAGAAAGATGGAACAACAATCTCGAGATTGTAAGCCTAATGTGGTTGTCTATAATATCATCATTGATAGTCTTTGTAAGGACACACTACTTCCTGATGCATTTAAGCTCTTCTCAGAAATGATTAGTAGGGGTATTGCCCCTGATGTCATTACTTATACCTCTTTGATTCATGGAGTTTGCAAATTAGGCCAGTGGAAAGAAGGTACGAGATTGTTGAATGAGATGGTCAGTAAAGATATCTTCCCAAATTTAGTAACCTACAATATCCTGGTCGATACACTTTGTAAGGAGGGGATGGTTGTGGGAGCACAAAGTGTGCTTGAAATGATGATTCAAAGAGGTATCAAACCTGATACAGTCACCTACAGTTCACTTATGGATGGCTACTGTCTACGAGGAGAAATGGAAAAAGCTAAAGAGGTTTTTGATCTTATGATTAGCAAAGGCTCCGGTGTTAATGTTCATAGTTATAACATACTGATGAATGGATATTGTAAGCAAAAACAGATAGATGATGCCACCAGGGTTTTTCAGGAAATGTCTGATAGTGGACTGCTTCCAAATACCATTACATATACTGCTCTTATGGATGGTCTTTGCAAAGTAGGAAGAATACAAGATGCACAGAAATTGTTCAGTAAGATGCAAGCTTGTGGCCAACTTCCAAATATTCAAACTTATGCTGTTTTACTGGATGGCCTGTGTAAAAACCAACAACTTGCAATGGCATTGGAGTTGTTTAGAGAGATGGAATGCATGAAGCTGGATTTGGATTTAGTAATTTACGATATTCTTATTGAAGGTTTGTGTATAGCTGGAAAAATTGCATCTGCAAGGGACCATTTTTATGGTTTATCATCAAAAGGACTTGAACCTGATGCAAGGACGTACACTATAATGATCAAGGGACTTTGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

509

Amino Acids

57.04

Weight (kDa)

8.48

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	73 - 122	1.1e-08	PPR repeat family
PPR_1	PF12854	140 - 171	2.8e-06	PPR repeat
PPR_2	PF13041	143 - 191	8.4e-13	PPR repeat family
PPR_1	PF12854	175 - 207	8e-11	PPR repeat
PPR_3	PF13812	182 - 225	7.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	182 - 229	4.8e-10	PPR repeat family
PPR_1	PF12854	211 - 243	6e-12	PPR repeat
PPR_2	PF13041	215 - 264	6.2e-19	PPR repeat family
PPR	PF01535	218 - 248	1.9e-06	PPR repeat
PPR_long	PF17177	231 - 330	1.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	238 - 297	1.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	246 - 279	1.2e-10	PPR repeat
PPR_2	PF13041	250 - 299	7e-17	PPR repeat family
PPR	PF01535	253 - 283	1.5e-06	PPR repeat
PPR_1	PF12854	281 - 313	1.3e-09	PPR repeat
PPR_2	PF13041	285 - 333	1.2e-15	PPR repeat family
PPR	PF01535	288 - 318	4.8e-06	PPR repeat
PPR_3	PF13812	308 - 367	2.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	316 - 348	7.5e-12	PPR repeat
PPR_2	PF13041	320 - 368	5.3e-14	PPR repeat family
PPR	PF01535	323 - 352	8.2e-09	PPR repeat
PPR_long	PF17177	337 - 469	3.1e-11	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	338 - 453	3.6e-10	Fungal tetratrico peptide repeats
PPR_1	PF12854	355 - 384	7.9e-09	PPR repeat
PPR_2	PF13041	356 - 404	3e-19	PPR repeat family
PPR	PF01535	359 - 388	1.1e-07	PPR repeat
PPR_3	PF13812	378 - 435	1.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	387 - 419	7.2e-12	PPR repeat
PPR_2	PF13041	390 - 439	7.1e-17	PPR repeat family
PPR	PF01535	393 - 422	3e-07	PPR repeat
PPR_1	PF12854	422 - 454	5.4e-07	PPR repeat
PPR_2	PF13041	433 - 473	1.5e-07	PPR repeat family
PPR_2	PF13041	461 - 509	1.6e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1080
AccB1I	GGYRCC	1 cut(s)	277
AccI	GTMKAC	2 cut(s)	62, 1000
AciI	CCGC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	1264
AcsI	RAATTY	2 cut(s)	413, 856
AcuI	CTGAAG	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	923
AfaI	GTAC	2 cut(s)	814, 1499
AhlI	ACTAGT	1 cut(s)	161
AjnI	CCWGG	3 cut(s)	168, 876, 1130
AjuI	GAANNNNNNNTTGG	2 cut(s)	1361, 1393
AluBI	AGCT	9 cut(s)	113, 183, 387, 596, 715, 1022, 1259, 1372, 1424
AluI	AGCT	9 cut(s)	113, 183, 387, 596, 715, 1022, 1259, 1372, 1424
Alw21I	GWGCWC	1 cut(s)	919
Alw26I	GTCTC	3 cut(s)	138, 170, 487
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	3 cut(s)	796, 1264, 1306
ApeKI	GCWGC	5 cut(s)	310, 491, 494, 514, 593
ApoI	RAATTY	2 cut(s)	413, 856
Asp700I	GAANNNNTTC	1 cut(s)	1241
AspA2I	CCTAGG	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	1447
AsuHPI	GGTGA	2 cut(s)	287, 961
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	1447
AvrII	CCTAGG	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	1266
BanI	GGYRCC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	919
BbvI	GCAGC	5 cut(s)	297, 501, 503, 506, 605
BciT130I	CCWGG	3 cut(s)	170, 878, 1132
BclI	TGATCA	2 cut(s)	348, 1509
BcoDI	GTCTC	3 cut(s)	138, 170, 487
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	3 cut(s)	39, 123, 162
BfmI	CTRYAG	2 cut(s)	591, 973
BisI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
BlnI	CCTAGG	1 cut(s)	122
BlsI	GCNGC	5 cut(s)	312, 493, 496, 516, 595
Bme1390I	CCNGG	3 cut(s)	170, 878, 1132
Bme18I	GGWCC	1 cut(s)	1447
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	1447
BmiI	GGNNCC	3 cut(s)	279, 1057, 1448
BmrFI	CCNGG	3 cut(s)	170, 878, 1132
BmsI	GCATC	7 cut(s)	421, 694, 1114, 1219, 1242, 1445, 1477
BpiI	GAAGAC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	122, 1131
BsaWI	WCCGGW	1 cut(s)	1058
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse1I	ACTGG	2 cut(s)	799, 1305
Bse3DI	GCAATG	1 cut(s)	1338
BseBI	CCWGG	3 cut(s)	170, 878, 1132
BseDI	CCNNGG	2 cut(s)	122, 1131
BseGI	GGATG	5 cut(s)	178, 909, 994, 1204, 1309
BseMI	GCAATG	1 cut(s)	1338
BseMII	CTCAG	2 cut(s)	477, 735
BseNI	ACTGG	2 cut(s)	799, 1305
BseRI	GAGGAG	1 cut(s)	1020
BseXI	GCAGC	5 cut(s)	297, 501, 503, 506, 605
BshFI	GGCC	3 cut(s)	798, 1266, 1308
BshNI	GGYRCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	919
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	1059
BslFI	GGGAC	1 cut(s)	1460
BsmAI	GTCTC	3 cut(s)	138, 170, 487
BsmFI	GGGAC	1 cut(s)	1460
BsmI	GAATGC	1 cut(s)	1367
BsnI	GGCC	3 cut(s)	798, 1266, 1308
Bso31I	GGTCTC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	630
Bsp1286I	GDGCHC	1 cut(s)	919
Bsp143I	GATC	3 cut(s)	348, 1036, 1509
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	3 cut(s)	798, 1266, 1308
BspCNI	CTCAG	2 cut(s)	478, 734
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	279, 1057, 1448
BspMAI	CTGCAG	1 cut(s)	595
BspQI	GCTCTTC	1 cut(s)	722
BspT107I	GGYRCC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	1338
BsrI	ACTGG	2 cut(s)	799, 1305
BssECI	CCNNGG	2 cut(s)	122, 1131
BssMI	GATC	3 cut(s)	348, 1036, 1509
BssT1I	CCWWGG	1 cut(s)	122
Bst2UI	CCWGG	3 cut(s)	170, 878, 1132
Bst4CI	ACNGT	3 cut(s)	967, 977, 998
Bst6I	CTCTTC	2 cut(s)	22, 722
BstC8I	GCNNGC	1 cut(s)	1257
BstDEI	CTNAG	3 cut(s)	486, 608, 721
BstF5I	GGATG	5 cut(s)	178, 909, 994, 1204, 1309
BstKTI	GATC	3 cut(s)	351, 1039, 1512
BstMAI	GTCTC	3 cut(s)	138, 170, 487
BstMBI	GATC	3 cut(s)	348, 1036, 1509
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 214, 795
BstNI	CCWGG	3 cut(s)	170, 878, 1132
BstSCI	CCNGG	3 cut(s)	168, 876, 1130
BstSFI	CTRYAG	2 cut(s)	591, 973
BstV1I	GCAGC	5 cut(s)	297, 501, 503, 506, 605
BstV2I	GAAGAC	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	1457
BsuRI	GGCC	3 cut(s)	798, 1266, 1308
BtsCI	GGATG	5 cut(s)	178, 909, 994, 1204, 1309
BtsIMutI	CAGTG	1 cut(s)	806
Cac8I	GCNNGC	1 cut(s)	1257
CciI	TCATGA	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	1447
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	813, 1498
CviAII	CATG	4 cut(s)	346, 574, 779, 1366
CviQI	GTAC	2 cut(s)	813, 1498
DdeI	CTNAG	3 cut(s)	486, 608, 721
DpnI	GATC	3 cut(s)	350, 1038, 1511
DpnII	GATC	3 cut(s)	348, 1036, 1509
DraIII	CACNNNGTG	1 cut(s)	923
EaeI	YGGCCR	1 cut(s)	1264
Eam1104I	CTCTTC	2 cut(s)	22, 722
EarI	CTCTTC	2 cut(s)	22, 722
Eco130I	CCWWGG	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	1 cut(s)	1447
Eco57I	CTGAAG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	630
EcoRII	CCWGG	3 cut(s)	168, 876, 1130
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	122
EcoT22I	ATGCAT	2 cut(s)	709, 1367
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	4 cut(s)	349, 577, 782, 1369
FaqI	GGGAC	1 cut(s)	1460
FatI	CATG	4 cut(s)	345, 573, 778, 1365
FauNDI	CATATG	1 cut(s)	375
FbaI	TGATCA	2 cut(s)	348, 1509
FblI	GTMKAC	2 cut(s)	62, 1000
Fnu4HI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
FokI	GGATG	5 cut(s)	185, 916, 1001, 1211, 1316
Fsp4HI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
FspBI	CTAG	3 cut(s)	39, 123, 162
GluI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	3 cut(s)	798, 1266, 1308
HapII	CCGG	1 cut(s)	1059
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	4 cut(s)	349, 577, 782, 1369
HindIII	AAGCTT	3 cut(s)	111, 181, 1257
HinfI	GANTC	3 cut(s)	381, 775, 940
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	2 cut(s)	287, 961
Hpy166II	GTNNAC	6 cut(s)	63, 543, 980, 1001, 1160, 1500
Hpy188I	TCNGA	3 cut(s)	487, 724, 1153
Hpy188III	TCNNGA	6 cut(s)	323, 346, 630, 632, 701, 1142
Hpy8I	GTNNAC	6 cut(s)	63, 543, 980, 1001, 1160, 1500
HpyAV	CCTTC	4 cut(s)	85, 228, 803, 1403
HpyCH4III	ACNGT	3 cut(s)	967, 977, 998
HpyCH4IV	ACGT	1 cut(s)	1496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 214, 795
HpyF3I	CTNAG	3 cut(s)	486, 608, 721
HpySE526I	ACGT	1 cut(s)	1496
Hsp92II	CATG	4 cut(s)	349, 577, 782, 1369
Ksp22I	TGATCA	2 cut(s)	348, 1509
Kzo9I	GATC	3 cut(s)	348, 1036, 1509
LguI	GCTCTTC	1 cut(s)	722
LmnI	GCTCC	2 cut(s)	914, 1061
Lsp1109I	GCAGC	5 cut(s)	297, 501, 503, 506, 605
LweI	GCATC	7 cut(s)	421, 694, 1114, 1219, 1242, 1445, 1477
MaeI	CTAG	3 cut(s)	39, 123, 162
MaeII	ACGT	1 cut(s)	1496
MaeIII	GTNAC	4 cut(s)	157, 862, 967, 1523
MalI	GATC	3 cut(s)	350, 1038, 1511
MboI	GATC	3 cut(s)	348, 1036, 1509
MboII	GAAGA	6 cut(s)	9, 47, 400, 709, 841, 1230
MfeI	CAATTG	2 cut(s)	260, 602
MhlI	GDGCHC	1 cut(s)	919
MlsI	TGGCCA	1 cut(s)	1266
MluCI	AATT	9 cut(s)	252, 260, 413, 602, 791, 856, 1238, 1389, 1431
MluNI	TGGCCA	1 cut(s)	1266
Mox20I	TGGCCA	1 cut(s)	1266
Mph1103I	ATGCAT	2 cut(s)	709, 1367
MroXI	GAANNNNTTC	1 cut(s)	1241
MscI	TGGCCA	1 cut(s)	1266
MseI	TTAA	3 cut(s)	179, 711, 1065
MslI	CAYNNNNRTG	3 cut(s)	1088, 1455, 1505
Msp20I	TGGCCA	1 cut(s)	1266
MspI	CCGG	1 cut(s)	1059
MspR9I	CCNGG	3 cut(s)	170, 878, 1132
MunI	CAATTG	2 cut(s)	260, 602
Mva1269I	GAATGC	1 cut(s)	1367
MvaI	CCWGG	3 cut(s)	170, 878, 1132
MwoI	GCNNNNNNNGC	3 cut(s)	205, 214, 795
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	3 cut(s)	348, 1036, 1509
NlaIII	CATG	4 cut(s)	349, 577, 782, 1369
NlaIV	GGNNCC	3 cut(s)	279, 1057, 1448
NmuCI	GTSAC	3 cut(s)	157, 967, 1523
NsiI	ATGCAT	2 cut(s)	709, 1367
PaeR7I	CTCGAG	1 cut(s)	630
PagI	TCATGA	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	722
PctI	GAATGC	1 cut(s)	1367
PdmI	GAANNNNTTC	1 cut(s)	1241
PfeI	GAWTC	3 cut(s)	381, 775, 940
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	5 cut(s)	312, 493, 496, 516, 595
PsiI	TTATAA	1 cut(s)	1080
Psp6I	CCWGG	3 cut(s)	168, 876, 1130
PspGI	CCWGG	3 cut(s)	168, 876, 1130
PspN4I	GGNNCC	3 cut(s)	279, 1057, 1448
PspPI	GGNCC	1 cut(s)	1447
PstI	CTGCAG	1 cut(s)	595
RsaI	GTAC	2 cut(s)	814, 1499
RsaNI	GTAC	2 cut(s)	813, 1498
RseI	CAYNNNNRTG	3 cut(s)	1088, 1455, 1505
SapI	GCTCTTC	1 cut(s)	722
SaqAI	TTAA	3 cut(s)	179, 711, 1065
SatI	GCNGC	5 cut(s)	311, 492, 495, 515, 594
Sau3AI	GATC	3 cut(s)	348, 1036, 1509
Sau96I	GGNCC	1 cut(s)	1447
ScrFI	CCNGG	3 cut(s)	170, 878, 1132
SduI	GDGCHC	1 cut(s)	919
SfaNI	GCATC	7 cut(s)	421, 694, 1114, 1219, 1242, 1445, 1477
SfcI	CTRYAG	2 cut(s)	591, 973
Sfr274I	CTCGAG	1 cut(s)	630
SinI	GGWCC	1 cut(s)	1447
SlaI	CTCGAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	3 cut(s)	1088, 1455, 1505
SmlI	CTYRAG	2 cut(s)	470, 630
SmoI	CTYRAG	2 cut(s)	470, 630
SpeI	ACTAGT	1 cut(s)	161
Sse9I	AATT	9 cut(s)	252, 260, 413, 602, 791, 856, 1238, 1389, 1431
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	1279
SspMI	CTAG	3 cut(s)	39, 123, 162
StyD4I	CCNGG	3 cut(s)	168, 876, 1130
StyI	CCWWGG	1 cut(s)	122
TaaI	ACNGT	3 cut(s)	967, 977, 998
TaiI	ACGT	1 cut(s)	1499
TaqI	TCGA	2 cut(s)	631, 882
TasI	AATT	9 cut(s)	252, 260, 413, 602, 791, 856, 1238, 1389, 1431
TfiI	GAWTC	3 cut(s)	381, 775, 940
Tru1I	TTAA	3 cut(s)	179, 711, 1065
Tru9I	TTAA	3 cut(s)	179, 711, 1065
TscAI	CASTG	1 cut(s)	806
TseFI	GTSAC	3 cut(s)	157, 967, 1523
TseI	GCWGC	5 cut(s)	310, 491, 494, 514, 593
Tsp45I	GTSAC	3 cut(s)	157, 967, 1523
TspDTI	ATGAA	6 cut(s)	92, 438, 767, 1061, 1106, 1382
TspRI	CASTG	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	1447
XapI	RAATTY	2 cut(s)	413, 856
XhoI	CTCGAG	1 cut(s)	630
XmaJI	CCTAGG	1 cut(s)	122
XmiI	GTMKAC	2 cut(s)	62, 1000
XmnI	GAANNNNTTC	1 cut(s)	1241
XspI	CTAG	3 cut(s)	39, 123, 162
Zsp2I	ATGCAT	2 cut(s)	709, 1367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.