Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

21896912 .. 21897652

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGCTTGCCATTGAGTGCTTTTCATTTTTCAATAGTGCTTTGGAGAATGAGATGGCTCCAATTTTAGTTATTGCTACGAAGAGAGGGATCACTACGATCAGAGGCACAAACTATAAATCCCCCCATGGGATTCCAATTGATCCCTTGATCGCCTGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

53

Amino Acids

5.79

Weight (kDa)

6.52

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	1 - 49	7.8e-20	TIP49 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	95, 134
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	31
AlwI	GGATC	2 cut(s)	95, 134
BccI	CCATC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	126
Bsp143I	GATC	4 cut(s)	87, 96, 139, 147
Bsp19I	CCATGG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	95, 134
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	4 cut(s)	87, 96, 139, 147
BssT1I	CCWWGG	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	6, 154
BstDSI	CCRYGG	1 cut(s)	124
BstKTI	GATC	4 cut(s)	90, 99, 142, 150
BstMBI	GATC	4 cut(s)	87, 96, 139, 147
BtgI	CCRYGG	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	6, 154
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	1 cut(s)	56
CviKI_1	RGCY	1 cut(s)	56
DpnI	GATC	4 cut(s)	89, 98, 141, 149
DpnII	GATC	4 cut(s)	87, 96, 139, 147
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	128
FaiI	YATR	4 cut(s)	114, 126, 158, 160
FatI	CATG	1 cut(s)	124
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	4 cut(s)	87, 96, 139, 147
LmnI	GCTCC	1 cut(s)	61
MalI	GATC	4 cut(s)	89, 98, 141, 149
MboI	GATC	4 cut(s)	87, 96, 139, 147
MboII	GAAGA	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	135
MluCI	AATT	2 cut(s)	60, 135
MnlI	CCTC	2 cut(s)	77, 95
MunI	CAATTG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	124
NdeII	GATC	4 cut(s)	87, 96, 139, 147
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	87, 96, 139, 147
SgeI	CNNG	3 cut(s)	17, 137, 157
Sse9I	AATT	2 cut(s)	60, 135
StyI	CCWWGG	1 cut(s)	124
TasI	AATT	2 cut(s)	60, 135
TfiI	GAWTC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.