Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

48191059 .. 48196041

Gene Structure 4983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1956 bp

ATGGAGAGGCTAAGAGTTGTTCCCGATGCTTACACGCTCAACATTATCATCAATTGCTTTTGTCACTTGAACCAAATGGGATTCAGTTTGTCTGTGTTGGGAAAATTCTTCAAATTTGGTATTCAACCAAATATCACAACCCTCAACACTCTTATCAAGGGCTTTTTCCTTGAAGGGAAAGTTTCTCAGGCAGCACTGCTTTTCAGCACAATGGTGGAGCAAGGTTGTAAGCCGAATGATGTTACTTTCGGAACGCTAATAAAGGGCTATTGCATGATGGGAAATAATACTGCAGCTATTCAATTGCTTAGGAAGATGGAACTACAATCTCGAGATTGTAAGCCTAATGTGGTTGTCTATAATATTATCATTGACAGTCTCTGTAAGGATGCACTAGTTCCTGATGCAGTCAAGCTCTTTTCAGAAATGATTAGTAGGGGTATAGCCCCTGACGTCATTACTTATACCTCTTTGATTCATGGAGTTTGCAAATTAGGCCAGTGGAAAGAAGCTACAAGATTGTTGAATGAGATGGTCAGTAAAGATATCTTCCCGAATTTAGTAACCTTCAGTATCCTGGTTGATACACTTTGTAAGGAGGGGATGGTTGTGGAAGCACAAAGTGTGCTTGAAATGATGATTCAAAGAGGTATCAAACCTGATACGGTCACCTACAGTTCACTTATGGATGGCTACTGTCTGCGAGGAGAAATGGAGAAAGCTAAAGAGGTTTTTGATATGATGAATAGCAAGGGCTCCATTGTTAATGCTTATAGTTATACCATACTGATAAATGGATATTGTAGGCGTAAAAGGATGAATGAGGCCATCAGGCTTTTTCACGAAATGTCTGATAGGGGACTGGTTCCAAATACCGTCACATATACTGCTCTTATGGATGGTTTTTGCAAAGTGGGAAGAATACTAGATGCCCAGAGATTGTTCAGTAAGTTGCAAGCTTGTGGCCAAGTTCTTGATGTTCAAACTTATGCCGTTCTACTGGATGGCCTGTTTAAAAATCAACAACTTGCTATGGCAATGGAGTTGTTCGGGGAGTTGGAATGCATGAAGCTGGATTTTAATATAGTACTATACAGTACTCTTATTGAAGGTTTGTGTATAGCTGGAAAAATTGAATCTGCAAAGGACCACTTTTACGGTTTATCATCAAAAGGACTTGAACCTGATGCGAGGACGTACACTATAATGATCAAGGGACTTTGTGATGGAGGCTTAATTAGTGAAGCAGAAAAGTTGCTTAGGGAAATGGAACAGAAAAGCATCGCTCCTGATGATTGCACATATAACACAATTATCCGAGGGTTTCTCAATAATGACGAGACAGTAAAGGCAGTGGGACTTGTTCACGAAATGATGGACAGGGGCTTCTCTGCAGATGCATGGACGATGGAATTAATCATTGGTTTATTGTCTAAAGATAAAGTAGATCCTGCTTTGTTGTCATTGATAGAAAAGGTCGCCATTGACAAAGCATATGGGAAGATCACCAAGGTCAGTAGGTCATTTTCCAGGCCATGGGACCCAGTGTTAAGTTTGTGCAGTGGTCCTGATGGGGAGTTGCAGAAGCATAAGGAGGTTGTGCATTGCGTTACACTTCATGAGATTGATGCCATCAACAGCAGAATACAAGGATTTCTGGCTCACTTTACAGGAGATACTGGTGAAATTCATTCAGAAGTGAGAGAACAGATTGACACACAGGTAGCAGTGTGGAGGGAGGAAGGGAATGCAGAAGTTGTGCCAGGTGTTCTCTTTATAGATGAGGTGCATATGCTTGACATTGAGTGCTTTTCATTTTTGAATCGTGCTTTGGAGAATGAGATGGCTCCAATTTTAGTTATTGCTACGAACAGAGGGATCACTACGATCAGAGGCACAAACTATAAATCCCCCCATATGGGATTCCAATTGATCTCCTTGATTGCCTGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

652

Amino Acids

72.7

Weight (kDa)

5.61

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	39 - 90	3.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	40 - 72	1.8e-06	PPR repeat
PPR_2	PF13041	43 - 91	3.8e-14	PPR repeat family
PPR_1	PF12854	75 - 107	1e-10	PPR repeat
PPR_2	PF13041	81 - 129	3.4e-10	PPR repeat family
PPR_long	PF17177	99 - 230	5.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	111 - 143	1.8e-11	PPR repeat
PPR_2	PF13041	115 - 164	1.7e-18	PPR repeat family
PPR	PF01535	118 - 148	3.2e-06	PPR repeat
PPR_3	PF13812	138 - 197	6.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	146 - 179	2.2e-12	PPR repeat
PPR_2	PF13041	151 - 199	2e-16	PPR repeat family
PPR	PF01535	153 - 183	1.8e-07	PPR repeat
PPR_1	PF12854	181 - 213	2.3e-09	PPR repeat
PPR_2	PF13041	194 - 233	1.1e-10	PPR repeat family
PPR_1	PF12854	216 - 248	6.7e-12	PPR repeat
PPR_2	PF13041	221 - 269	5.5e-15	PPR repeat family
PPR	PF01535	223 - 252	3.9e-08	PPR repeat
TPR_24	PF23276	238 - 352	1.4e-11	Fungal tetratrico peptide repeats
PPR_3	PF13812	244 - 300	5.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	253 - 284	1.4e-10	PPR repeat
PPR_2	PF13041	256 - 304	9.7e-20	PPR repeat family
PPR	PF01535	258 - 288	8.5e-09	PPR repeat
PPR_1	PF12854	286 - 317	1.3e-10	PPR repeat
PPR_2	PF13041	290 - 339	3.9e-12	PPR repeat family
PPR_2	PF13041	326 - 373	4.4e-07	PPR repeat family
PPR_2	PF13041	361 - 409	1.2e-12	PPR repeat family
PPR_3	PF13812	389 - 442	1.7e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	391 - 424	1.5e-12	PPR repeat
PPR	PF01535	399 - 427	5.7e-07	PPR repeat
PPR_2	PF13041	411 - 443	2.7e-07	PPR repeat family
PPR_2	PF13041	430 - 475	3e-08	PPR repeat family
TIP49	PF06068	492 - 639	3.2e-59	TIP49 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	1536
AclWI	GGATC	2 cut(s)	1442, 1886
AcoI	YGGCCR	1 cut(s)	964
AcsI	RAATTY	4 cut(s)	104, 113, 556, 1686
AcuI	CTGAAG	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	453
AdeI	CACNNNGTG	1 cut(s)	623
AfaI	GTAC	3 cut(s)	1089, 1099, 1199
AfiI	CCNNNNNNNGG	3 cut(s)	1536, 1918, 1919
AhlI	ACTAGT	1 cut(s)	394
AjnI	CCWGG	3 cut(s)	576, 1529, 1762
AjuI	GAANNNNNNNTTGG	4 cut(s)	1404, 1436, 1814, 1846
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	7 cut(s)	296, 415, 512, 722, 959, 1072, 1124
AluI	AGCT	7 cut(s)	296, 415, 512, 722, 959, 1072, 1124
Alw26I	GTCTC	2 cut(s)	383, 1334
AlwI	GGATC	2 cut(s)	1442, 1886
AlwNI	CAGNNNCTG	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	5 cut(s)	496, 825, 964, 1006, 1532
ApeKI	GCWGC	2 cut(s)	191, 293
ApoI	RAATTY	4 cut(s)	104, 113, 556, 1686
AseI	ATTAAT	1 cut(s)	1415
AspS9I	GGNCC	3 cut(s)	1147, 1540, 1565
AsuHPI	GGTGA	3 cut(s)	661, 1498, 1694
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	3 cut(s)	1147, 1540, 1565
BalI	TGGCCA	1 cut(s)	966
BanII	GRGCYC	1 cut(s)	758
BbvI	GCAGC	2 cut(s)	203, 305
BceAI	ACGGC	1 cut(s)	977
BciT130I	CCWGG	3 cut(s)	578, 1531, 1764
BciVI	GTATCC	1 cut(s)	584
BclI	TGATCA	1 cut(s)	1209
BcoDI	GTCTC	2 cut(s)	383, 1334
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	2 cut(s)	395, 926
BfmI	CTRYAG	3 cut(s)	291, 673, 1392
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	2 cut(s)	192, 294
BlsI	GCNGC	2 cut(s)	193, 295
BmcAI	AGTACT	2 cut(s)	1089, 1099
Bme1390I	CCNGG	3 cut(s)	578, 1531, 1764
Bme18I	GGWCC	3 cut(s)	1147, 1540, 1565
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	3 cut(s)	1147, 1540, 1565
BmiI	GGNNCC	5 cut(s)	757, 867, 1541, 1542, 1848
BmrFI	CCNGG	3 cut(s)	578, 1531, 1764
BmrI	ACTGGG	1 cut(s)	1538
BmsI	GCATC	8 cut(s)	16, 379, 394, 919, 1177, 1290, 1387, 1618
BmuI	ACTGGG	1 cut(s)	1538
BplI	GAGNNNNNCTC	2 cut(s)	1311, 1343
Bpu10I	CCTNAGC	2 cut(s)	308, 1259
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	1318, 1509, 1535
Bsc4I	CCNNNNNNNGG	3 cut(s)	1536, 1918, 1919
Bse1I	ACTGG	5 cut(s)	499, 867, 1005, 1544, 1684
Bse3DI	GCAATG	2 cut(s)	1044, 1603
BseBI	CCWGG	3 cut(s)	578, 1531, 1764
BseDI	CCNNGG	3 cut(s)	1318, 1509, 1535
BseGI	GGATG	6 cut(s)	394, 609, 694, 822, 904, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	1536, 1918, 1919
BseMI	GCAATG	2 cut(s)	1044, 1603
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	5 cut(s)	499, 867, 1005, 1544, 1684
BseRI	GAGGAG	1 cut(s)	720
BseXI	GCAGC	2 cut(s)	203, 305
BsgI	GTGCAG	1 cut(s)	1579
BshFI	GGCC	5 cut(s)	498, 827, 966, 1008, 1534
BsiHKCI	CYCGRG	1 cut(s)	330
BslFI	GGGAC	4 cut(s)	873, 1230, 1371, 1553
BslI	CCNNNNNNNGG	3 cut(s)	1536, 1918, 1919
BsmAI	GTCTC	2 cut(s)	383, 1334
BsmFI	GGGAC	4 cut(s)	873, 1230, 1371, 1553
BsmI	GAATGC	2 cut(s)	1067, 1753
BsnI	GGCC	5 cut(s)	498, 827, 966, 1008, 1534
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp143I	GATC	6 cut(s)	1209, 1447, 1503, 1878, 1887, 1932
Bsp19I	CCATGG	1 cut(s)	1535
BspANI	GGCC	5 cut(s)	498, 827, 966, 1008, 1534
BspCNI	CTCAG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	1618
BspLI	GGNNCC	5 cut(s)	757, 867, 1541, 1542, 1848
BspMAI	CTGCAG	2 cut(s)	295, 1396
BspPI	GGATC	2 cut(s)	1442, 1886
BsrDI	GCAATG	2 cut(s)	1044, 1603
BsrI	ACTGG	5 cut(s)	499, 867, 1005, 1544, 1684
BssECI	CCNNGG	3 cut(s)	1318, 1509, 1535
BssMI	GATC	6 cut(s)	1209, 1447, 1503, 1878, 1887, 1932
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	1509, 1535
Bst2UI	CCWGG	3 cut(s)	578, 1531, 1764
Bst4CI	ACNGT	8 cut(s)	377, 667, 677, 698, 877, 1097, 1160, 1345
BstACI	GRCGYC	1 cut(s)	453
BstC8I	GCNNGC	2 cut(s)	957, 1948
BstDEI	CTNAG	4 cut(s)	11, 186, 308, 1259
BstDSI	CCRYGG	1 cut(s)	1535
BstEII	GGTNACC	1 cut(s)	667
BstF5I	GGATG	6 cut(s)	394, 609, 694, 822, 904, 1009
BstKTI	GATC	6 cut(s)	1212, 1450, 1506, 1881, 1890, 1935
BstMAI	GTCTC	2 cut(s)	383, 1334
BstMBI	GATC	6 cut(s)	1209, 1447, 1503, 1878, 1887, 1932
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	3 cut(s)	578, 1531, 1764
BstPI	GGTNACC	1 cut(s)	667
BstSCI	CCNGG	3 cut(s)	576, 1529, 1762
BstSFI	CTRYAG	3 cut(s)	291, 673, 1392
BstV1I	GCAGC	2 cut(s)	203, 305
BstX2I	RGATCY	1 cut(s)	1447
BstYI	RGATCY	1 cut(s)	1447
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	5 cut(s)	498, 827, 966, 1008, 1534
BtgI	CCRYGG	1 cut(s)	1535
BtgZI	GCGATG	1 cut(s)	1267
BtsCI	GGATG	6 cut(s)	394, 609, 694, 822, 904, 1009
BtsI	GCAGTG	4 cut(s)	194, 1359, 1567, 1734
BtsIMutI	CAGTG	6 cut(s)	194, 506, 1359, 1551, 1567, 1734
Cac8I	GCNNGC	2 cut(s)	957, 1948
CaiI	CAGNNNCTG	1 cut(s)	381
CciI	TCATGA	1 cut(s)	1618
Cfr13I	GGNCC	3 cut(s)	1147, 1540, 1565
Csp6I	GTAC	3 cut(s)	1088, 1098, 1198
CviAII	CATG	6 cut(s)	274, 479, 1066, 1401, 1536, 1619
CviQI	GTAC	3 cut(s)	1088, 1098, 1198
DdeI	CTNAG	4 cut(s)	11, 186, 308, 1259
DpnI	GATC	6 cut(s)	1211, 1449, 1505, 1880, 1889, 1934
DpnII	GATC	6 cut(s)	1209, 1447, 1503, 1878, 1887, 1932
DraI	TTTAAA	1 cut(s)	1015
DraIII	CACNNNGTG	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	964
Eco130I	CCWWGG	2 cut(s)	1509, 1535
Eco24I	GRGCYC	1 cut(s)	758
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	3 cut(s)	1147, 1540, 1565
Eco57I	CTGAAG	1 cut(s)	553
Eco88I	CYCGRG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	1540
EcoO65I	GGTNACC	1 cut(s)	667
EcoRII	CCWGG	3 cut(s)	576, 1529, 1762
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	1509, 1535
EcoT22I	ATGCAT	2 cut(s)	1067, 1402
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	2 cut(s)	1509, 1535
FaeI	CATG	6 cut(s)	277, 482, 1069, 1404, 1539, 1622
FalI	AAGNNNNNCTT	2 cut(s)	1136, 1168
FaqI	GGGAC	4 cut(s)	873, 1230, 1371, 1553
FatI	CATG	6 cut(s)	273, 478, 1065, 1400, 1535, 1618
FauNDI	CATATG	3 cut(s)	1495, 1791, 1917
FbaI	TGATCA	1 cut(s)	1209
Fnu4HI	GCNGC	2 cut(s)	192, 294
FokI	GGATG	6 cut(s)	401, 616, 701, 829, 911, 1016
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	2 cut(s)	192, 294
FspBI	CTAG	2 cut(s)	395, 926
GluI	GCNGC	2 cut(s)	192, 294
HaeIII	GGCC	5 cut(s)	498, 827, 966, 1008, 1534
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	6 cut(s)	277, 482, 1069, 1404, 1539, 1622
HindIII	AAGCTT	1 cut(s)	957
HinfI	GANTC	6 cut(s)	81, 475, 640, 1136, 1822, 1923
HphI	GGTGA	3 cut(s)	661, 1498, 1694
Hpy166II	GTNNAC	3 cut(s)	680, 1200, 1366
Hpy188I	TCNGA	6 cut(s)	251, 424, 853, 1319, 1696, 1892
Hpy8I	GTNNAC	3 cut(s)	680, 1200, 1366
HpyAV	CCTTC	4 cut(s)	167, 577, 1103, 1736
HpyCH4III	ACNGT	8 cut(s)	377, 667, 677, 698, 877, 1097, 1160, 1345
HpyCH4IV	ACGT	2 cut(s)	453, 1196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	4 cut(s)	11, 186, 308, 1259
HpySE526I	ACGT	2 cut(s)	453, 1196
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	6 cut(s)	277, 482, 1069, 1404, 1539, 1622
KflI	GGGWCCC	1 cut(s)	1540
Ksp22I	TGATCA	1 cut(s)	1209
Kzo9I	GATC	6 cut(s)	1209, 1447, 1503, 1878, 1887, 1932
LmnI	GCTCC	4 cut(s)	217, 761, 1291, 1852
Lsp1109I	GCAGC	2 cut(s)	203, 305
LweI	GCATC	8 cut(s)	16, 379, 394, 919, 1177, 1290, 1387, 1618
MaeI	CTAG	2 cut(s)	395, 926
MaeII	ACGT	2 cut(s)	453, 1196
MaeIII	GTNAC	6 cut(s)	62, 241, 562, 667, 877, 1609
MalI	GATC	6 cut(s)	1211, 1449, 1505, 1880, 1889, 1934
MboI	GATC	6 cut(s)	1209, 1447, 1503, 1878, 1887, 1932
MboII	GAAGA	5 cut(s)	100, 325, 541, 930, 1513
MfeI	CAATTG	3 cut(s)	52, 302, 1928
MflI	RGATCY	1 cut(s)	1447
MhlI	GDGCHC	1 cut(s)	758
MlsI	TGGCCA	1 cut(s)	966
MluNI	TGGCCA	1 cut(s)	966
MmeI	TCCRAC	1 cut(s)	1038
Mox20I	TGGCCA	1 cut(s)	966
Mph1103I	ATGCAT	2 cut(s)	1067, 1402
MscI	TGGCCA	1 cut(s)	966
MseI	TTAA	6 cut(s)	765, 1014, 1080, 1235, 1415, 1550
MslI	CAYNNNNRTG	2 cut(s)	212, 1205
Msp20I	TGGCCA	1 cut(s)	966
MspR9I	CCNGG	3 cut(s)	578, 1531, 1764
MunI	CAATTG	3 cut(s)	52, 302, 1928
Mva1269I	GAATGC	2 cut(s)	1067, 1753
MvaI	CCWGG	3 cut(s)	578, 1531, 1764
MwoI	GCNNNNNNNGC	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	1535
NdeI	CATATG	3 cut(s)	1495, 1791, 1917
NdeII	GATC	6 cut(s)	1209, 1447, 1503, 1878, 1887, 1932
NlaIII	CATG	6 cut(s)	277, 482, 1069, 1404, 1539, 1622
NlaIV	GGNNCC	5 cut(s)	757, 867, 1541, 1542, 1848
NmuCI	GTSAC	3 cut(s)	62, 667, 877
NsiI	ATGCAT	2 cut(s)	1067, 1402
OliI	CACNNNNGTG	1 cut(s)	212
PaeR7I	CTCGAG	1 cut(s)	330
PagI	TCATGA	1 cut(s)	1618
PctI	GAATGC	2 cut(s)	1067, 1753
PfeI	GAWTC	6 cut(s)	81, 475, 640, 1136, 1822, 1923
PflMI	CCANNNNNTGG	1 cut(s)	1536
PkrI	GCNGC	2 cut(s)	193, 295
PpuMI	RGGWCCY	1 cut(s)	1540
PshBI	ATTAAT	1 cut(s)	1415
Psp5II	RGGWCCY	1 cut(s)	1540
Psp6I	CCWGG	3 cut(s)	576, 1529, 1762
PspEI	GGTNACC	1 cut(s)	667
PspGI	CCWGG	3 cut(s)	576, 1529, 1762
PspN4I	GGNNCC	5 cut(s)	757, 867, 1541, 1542, 1848
PspPI	GGNCC	3 cut(s)	1147, 1540, 1565
PspPPI	RGGWCCY	1 cut(s)	1540
PstI	CTGCAG	2 cut(s)	295, 1396
PstNI	CAGNNNCTG	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	1447
RsaI	GTAC	3 cut(s)	1089, 1099, 1199
RsaNI	GTAC	3 cut(s)	1088, 1098, 1198
RseI	CAYNNNNRTG	2 cut(s)	212, 1205
SaqAI	TTAA	6 cut(s)	765, 1014, 1080, 1235, 1415, 1550
SatI	GCNGC	2 cut(s)	192, 294
Sau3AI	GATC	6 cut(s)	1209, 1447, 1503, 1878, 1887, 1932
Sau96I	GGNCC	3 cut(s)	1147, 1540, 1565
ScaI	AGTACT	2 cut(s)	1089, 1099
ScrFI	CCNGG	3 cut(s)	578, 1531, 1764
SduI	GDGCHC	1 cut(s)	758
SfaNI	GCATC	8 cut(s)	16, 379, 394, 919, 1177, 1290, 1387, 1618
SfcI	CTRYAG	3 cut(s)	291, 673, 1392
Sfr274I	CTCGAG	1 cut(s)	330
SinI	GGWCC	3 cut(s)	1147, 1540, 1565
SlaI	CTCGAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	2 cut(s)	212, 1205
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SpeI	ACTAGT	1 cut(s)	394
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	395, 926
StyD4I	CCNGG	3 cut(s)	576, 1529, 1762
StyI	CCWWGG	2 cut(s)	1509, 1535
TaaI	ACNGT	8 cut(s)	377, 667, 677, 698, 877, 1097, 1160, 1345
TaiI	ACGT	2 cut(s)	456, 1199
TaqI	TCGA	1 cut(s)	331
TatI	WGTACW	2 cut(s)	1087, 1097
TfiI	GAWTC	6 cut(s)	81, 475, 640, 1136, 1822, 1923
Tru1I	TTAA	6 cut(s)	765, 1014, 1080, 1235, 1415, 1550
Tru9I	TTAA	6 cut(s)	765, 1014, 1080, 1235, 1415, 1550
TscAI	CASTG	6 cut(s)	201, 506, 1359, 1551, 1567, 1734
TseFI	GTSAC	3 cut(s)	62, 667, 877
TseI	GCWGC	2 cut(s)	191, 293
Tsp45I	GTSAC	3 cut(s)	62, 667, 877
TspDTI	ATGAA	7 cut(s)	467, 758, 833, 1082, 1607, 1679, 1803
TspRI	CASTG	6 cut(s)	201, 506, 1359, 1551, 1567, 1734
Van91I	CCANNNNNTGG	1 cut(s)	1536
VpaK11BI	GGWCC	3 cut(s)	1147, 1540, 1565
VspI	ATTAAT	1 cut(s)	1415
XapI	RAATTY	4 cut(s)	104, 113, 556, 1686
XhoI	CTCGAG	1 cut(s)	330
XspI	CTAG	2 cut(s)	395, 926
ZraI	GACGTC	1 cut(s)	454
ZrmI	AGTACT	2 cut(s)	1089, 1099
Zsp2I	ATGCAT	2 cut(s)	1067, 1402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.