Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Reverse (-)

22460229 .. 22462916

Gene Structure 2688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G012330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACACCATGGGACCCAGTGTTAAGTAAGTCCAGTGGTCCTGACAGGGAGTTGCAGATGTGTAAGGAGGTTGTGCATTGCGTCACACTTCATGAGATTGATGTCATCAACAGCAGAACACAAGGATTTCTGGCTCTCTTTATAGGAGATACTGGTGAAATTCATTCAGAAGTGAGAGAACAGATTGACACACAGGTAGCAGAGTGTGTTCTCTTTATAGATGAGGTGCATATGCTTGACATTGAGTGCTTTTCATTTTTGAATCGTGCTTTGGAGAATGAGATGGCTCCAATTTTAGTTATTGCTACGAAGAGAGGGATCACTACGATCAGAGGCACAAACTATAAATCCCCCCATGGGATTCCAATTGATCCCTTGATGCGCCTGCATATAATCACCGTTCAGCCTTATACAGAGGGTGAAATTCGCAAGATTCTTGATGCAAAGCATTTGTTGACCAAGATTGGTGTAGATGCATCCTTGAGATATGCCATCCATCTCATAACAGCTGCTGCATTGTCATGCCAAAAGCGGAAGGGAAAGATTGTTGAGATGGAGGATATTAACCATGTTTATCTGATGCCTGATGGAGCATCAGAATCAGTACATGTTCAACAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

207

Amino Acids

23.24

Weight (kDa)

5.65

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49	PF06068	14 - 139	2.1e-49	TIP49 P-loop domain
TIP49_C	PF17856	147 - 193	7.4e-14	TIP49 AAA-lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	2 cut(s)	326, 365
AcsI	RAATTY	2 cut(s)	159, 423
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	2 cut(s)	262, 614
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
AlwI	GGATC	2 cut(s)	326, 365
AlwNI	CAGNNNCTG	1 cut(s)	512
ApeKI	GCWGC	2 cut(s)	509, 512
ApoI	RAATTY	2 cut(s)	159, 423
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	2 cut(s)	13, 38
AsuHPI	GGTGA	3 cut(s)	167, 388, 431
AvaII	GGWCC	2 cut(s)	13, 38
BbvI	GCAGC	2 cut(s)	496, 499
BccI	CCATC	5 cut(s)	277, 500, 504, 547, 581
BisI	GCNGC	2 cut(s)	510, 513
BlsI	GCNGC	2 cut(s)	511, 514
Bme18I	GGWCC	2 cut(s)	13, 38
BmgT120I	GGNCC	2 cut(s)	13, 38
BmiI	GGNNCC	3 cut(s)	14, 15, 288
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	6 cut(s)	369, 430, 463, 485, 570, 602
BmuI	ACTGGG	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	8, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	3 cut(s)	17, 33, 157
Bse3DI	GCAATG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	8, 355
BseGI	GGATG	2 cut(s)	476, 492
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	76
BseNI	ACTGG	3 cut(s)	17, 33, 157
BseXI	GCAGC	2 cut(s)	496, 499
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	318, 327, 370
Bsp19I	CCATGG	2 cut(s)	8, 355
BspACI	CCGC	1 cut(s)	532
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	14, 15, 288
BspPI	GGATC	2 cut(s)	326, 365
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	17, 33, 157
BssECI	CCNNGG	2 cut(s)	8, 355
BssMI	GATC	3 cut(s)	318, 327, 370
BssT1I	CCWWGG	2 cut(s)	8, 355
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	386
BstDSI	CCRYGG	2 cut(s)	8, 355
BstF5I	GGATG	2 cut(s)	476, 492
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	3 cut(s)	321, 330, 373
BstMBI	GATC	3 cut(s)	318, 327, 370
BstNSI	RCATGY	1 cut(s)	611
BstV1I	GCAGC	2 cut(s)	496, 499
BtgI	CCRYGG	2 cut(s)	8, 355
BtsCI	GGATG	2 cut(s)	476, 492
BtsIMutI	CAGTG	2 cut(s)	24, 40
Cac8I	GCNNGC	1 cut(s)	386
CaiI	CAGNNNCTG	1 cut(s)	512
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	13, 38
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	6 cut(s)	9, 92, 356, 522, 569, 608
CviJI	RGCY	4 cut(s)	134, 287, 406, 509
CviKI_1	RGCY	4 cut(s)	134, 287, 406, 509
CviQI	GTAC	1 cut(s)	605
DpnI	GATC	3 cut(s)	320, 329, 372
DpnII	GATC	3 cut(s)	318, 327, 370
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	2 cut(s)	8, 355
Eco47I	GGWCC	2 cut(s)	13, 38
EcoO109I	RGGNCCY	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	8, 355
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	8, 355
FaeI	CATG	6 cut(s)	12, 95, 359, 525, 572, 611
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	6 cut(s)	8, 91, 355, 521, 568, 607
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	510, 513
FokI	GGATG	2 cut(s)	463, 479
Fsp4HI	GCNGC	2 cut(s)	510, 513
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	2 cut(s)	510, 513
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	6 cut(s)	12, 95, 359, 525, 572, 611
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HinfI	GANTC	4 cut(s)	262, 361, 433, 599
HphI	GGTGA	3 cut(s)	167, 388, 431
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	4 cut(s)	169, 332, 579, 598
Hpy188III	TCNNGA	3 cut(s)	41, 92, 437
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4V	TGCA	7 cut(s)	55, 76, 229, 388, 443, 476, 515
Hsp92II	CATG	6 cut(s)	12, 95, 359, 525, 572, 611
HspAI	GCGC	1 cut(s)	382
KflI	GGGWCCC	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	318, 327, 370
LmnI	GCTCC	2 cut(s)	292, 590
LpnPI	CCDG	9 cut(s)	30, 31, 46, 54, 116, 138, 179, 398, 597
Lsp1109I	GCAGC	2 cut(s)	496, 499
LweI	GCATC	6 cut(s)	369, 430, 463, 485, 570, 602
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	320, 329, 372
MboI	GATC	3 cut(s)	318, 327, 370
MboII	GAAGA	1 cut(s)	322
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	4 cut(s)	159, 291, 366, 423
MnlI	CCTC	6 cut(s)	61, 217, 308, 326, 409, 550
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	2 cut(s)	23, 564
MslI	CAYNNNNRTG	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	509
MunI	CAATTG	1 cut(s)	366
NcoI	CCATGG	2 cut(s)	8, 355
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	3 cut(s)	318, 327, 370
NlaIII	CATG	6 cut(s)	12, 95, 359, 525, 572, 611
NlaIV	GGNNCC	3 cut(s)	14, 15, 288
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	611
PagI	TCATGA	1 cut(s)	91
PciI	ACATGT	1 cut(s)	607
PfeI	GAWTC	4 cut(s)	262, 361, 433, 599
PkrI	GCNGC	2 cut(s)	511, 514
PpuMI	RGGWCCY	1 cut(s)	13
PscI	ACATGT	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	14, 15, 288
PspPI	GGNCC	2 cut(s)	13, 38
PspPPI	RGGWCCY	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	2 cut(s)	23, 564
SatI	GCNGC	2 cut(s)	510, 513
Sau3AI	GATC	3 cut(s)	318, 327, 370
Sau96I	GGNCC	2 cut(s)	13, 38
SetI	ASST	4 cut(s)	72, 198, 228, 511
SfaNI	GCATC	6 cut(s)	369, 430, 463, 485, 570, 602
SinI	GGWCC	2 cut(s)	13, 38
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	4 cut(s)	159, 291, 366, 423
SsiI	CCGC	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	8, 355
TaaI	ACNGT	1 cut(s)	400
TasI	AATT	4 cut(s)	159, 291, 366, 423
TatI	WGTACW	1 cut(s)	604
TfiI	GAWTC	4 cut(s)	262, 361, 433, 599
Tru1I	TTAA	2 cut(s)	23, 564
Tru9I	TTAA	2 cut(s)	23, 564
TscAI	CASTG	2 cut(s)	24, 40
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	509, 512
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	80, 152, 243
TspRI	CASTG	2 cut(s)	24, 40
VpaK11BI	GGWCC	2 cut(s)	13, 38
XapI	RAATTY	2 cut(s)	159, 423
XceI	RCATGY	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.