Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

48107267 .. 48109024

Gene Structure 1758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGATGCGGAGAAGTGCCTCTTCTTGTTATTGCAACAACACTAGAGGTATGCCTTGTCTTGAGTCTACTCTTGCACTTTTTCATTCCCAAGCTTCAAAGCCTAGGAACACCCAGATTACGAGAGACCCACCCAAAGTCACTAGTCTCCAGGATGGTTTAAGCTTGTTCAATACTATGCTTCAAATGCGTCCTCTGCCTTCTATTGTCTGTTTCAATAAAATCTTGGGTCAAATTGCTCAATTGAAACATCATTCGGCACCCATCTCTCTGTTTCACCAAGTGTGTCTGCTGCGAGTTGTTCCTGATGTTTATACTTTGAACATCATGATCAACTGCTTTTGTCATTTGAACCAAATGGGATTCAGTTTGTCTGTGTTGGGAAAGTTCTTTAAATTTGGTTATGAACCAGATGCTACCACCCTCAACACTCTGATCAAGGGTTTTTTCCTTGAGAATAAAGTCTCCGAGGCAGCAGCACTTTTCGGCAAAATGCTGCTCCAAGGTTGTAAGCCGAATGCGTTTACTTTTGGAACACTAATAAAGGGCTATTGCATGATGGGAAATAATACTGCAGCTATTCAATTGCTTAGAAAGATGGAACAACAATCTCGAGATTGTAAGCCTAATGTGGTTGTCTATAATATCATCATTGATAGTCTTTGTAAGGACACACTACTTCCTGATGCATTTAAGCTCTTCTCAGAAATGATTAGTAGGGGTATTGCCCCGGACGTCATTACTTATACCTCTTTGATTCATGGAGTTTGCAAATTAGGCCAGTGGAAAGAAGCTACAAGATTGTTGAATGAGATGGTCAGTAAAGATATCTTCCCGAATTTAGTAACCTTCAGTATCCTGGTCGATACACTTTGTAAGGAGGGGATGGTTGTGGAAGCACAAAGTGTGCTTGAAATGATGATTCAAAGAGGTATCAAACCTGATACAGTCACCTACAGTTCACTTATGGATGGCTACTGTCTACAAGGAGAAATGGAGAAAGCTAAAGAGGTTTTTGATCTTATGATTAGCAAAGGCTTCGGTGTTAATGTTCATAGTTATAACATACTGATGAATGGATACTGTAAGCATAAACGGATGGATGATGCCACCAGGGTTTTTCAGGAAATGTCTGATAGTGGACTGCTTCCAAATACCATTACATATACTGCTCTTATGGATGGTTTTTGCAAAGTAGGAAGAATACAAGATGCACAGAAATTGTTCAGTAAGATGCAAGCTTGTGGCCAACTTCCAAATATTCAAACTTATGCTGTTTTACTGGATGGCCTGTGTAAAAACCAACAACTTGCAATGGCATTGGAGTTGTTTAGAGAGATGGAATGCATGAAGCTGGATTTGGATATAGTAATTTACAATATTCTTATTGAAGGTTTGTGTATAGCTGGAAAAATTGCATCTGCAAGGGACCATTTTTACGGTTTATCATCAAAAGGACTTGAACCTGATGCAAGGACGTATAATATAATGATCAAGGGACTTTGTGATGGAGGCTTAATAAATGAAGCAGAAAAGTTGCTTAGAGAAATGGAAGATAAATGCCATTCTCCAAATGATTGCACATATAACACAATTATCCGAGGGTTTCTCAATAATGACGAGACAGTAAAGGCAGTGGGACTTGTTCACGAAATGATGGACAGCGGTTTCTCTGCAGATGCATGGACGATGGAATTAATCATTGGTTTATTGTCTAAAGAAAAAGTAGATCCTGCTTTGTTGTCATTGATAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

586

Amino Acids

65.43

Weight (kDa)

6.82

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	66 - 115	2.4e-06	PPR repeat family
PPR_1	PF12854	133 - 164	4e-07	PPR repeat
PPR_2	PF13041	136 - 184	2.7e-13	PPR repeat family
PPR_1	PF12854	168 - 200	7.9e-11	PPR repeat
PPR_3	PF13812	175 - 218	9.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	178 - 222	2.3e-09	PPR repeat family
PPR_long	PF17177	191 - 329	7.7e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	204 - 236	7.2e-12	PPR repeat
PPR_2	PF13041	208 - 257	7.4e-19	PPR repeat family
PPR	PF01535	211 - 241	2.3e-06	PPR repeat
PPR_3	PF13812	231 - 290	6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	239 - 272	1.9e-12	PPR repeat
PPR_2	PF13041	243 - 292	2.2e-17	PPR repeat family
PPR	PF01535	246 - 276	1.6e-07	PPR repeat
PPR_1	PF12854	274 - 306	2.1e-09	PPR repeat
PPR_2	PF13041	289 - 326	1.9e-10	PPR repeat family
PPR_3	PF13812	301 - 360	3.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	309 - 341	6.5e-12	PPR repeat
PPR_2	PF13041	316 - 362	1.2e-13	PPR repeat family
PPR	PF01535	316 - 346	4e-09	PPR repeat
TPR_24	PF23276	329 - 446	2e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	330 - 461	8.7e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	345 - 377	7.7e-10	PPR repeat
PPR_2	PF13041	349 - 397	3.3e-19	PPR repeat family
PPR	PF01535	352 - 381	1.3e-08	PPR repeat
TPR_24	PF23276	369 - 474	3.3e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	371 - 428	6.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	380 - 412	5.1e-12	PPR repeat
PPR_2	PF13041	383 - 432	7.3e-17	PPR repeat family
PPR	PF01535	386 - 415	2.3e-07	PPR repeat
PPR_1	PF12854	415 - 447	6.4e-07	PPR repeat
PPR_2	PF13041	454 - 502	1.4e-13	PPR repeat family
PPR_1	PF12854	484 - 517	1e-13	PPR repeat
PPR	PF01535	492 - 519	3.7e-07	PPR repeat
PPR_2	PF13041	500 - 536	3.4e-07	PPR repeat family
PPR_2	PF13041	523 - 568	8.8e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1059
AatII	GACGTC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	256
AccI	GTMKAC	2 cut(s)	65, 979
AciI	CCGC	2 cut(s)	7, 1662
AclWI	GGATC	1 cut(s)	1721
AcoI	YGGCCR	1 cut(s)	1243
AcsI	RAATTY	2 cut(s)	392, 835
AcuI	CTGAAG	1 cut(s)	832
AcyI	GRCGYC	1 cut(s)	732
AdeI	CACNNNGTG	2 cut(s)	280, 902
AhlI	ACTAGT	1 cut(s)	140
AjnI	CCWGG	3 cut(s)	147, 855, 1109
AjuI	GAANNNNNNNTTGG	4 cut(s)	1340, 1372, 1683, 1715
AluBI	AGCT	9 cut(s)	92, 162, 575, 694, 791, 1001, 1238, 1351, 1403
AluI	AGCT	9 cut(s)	92, 162, 575, 694, 791, 1001, 1238, 1351, 1403
Alw26I	GTCTC	4 cut(s)	117, 149, 466, 1613
AlwI	GGATC	1 cut(s)	1721
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	3 cut(s)	775, 1243, 1285
ApeKI	GCWGC	5 cut(s)	289, 470, 473, 493, 572
ApoI	RAATTY	2 cut(s)	392, 835
AseI	ATTAAT	1 cut(s)	1694
Asp700I	GAANNNNTTC	1 cut(s)	1220
AspA2I	CCTAGG	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	1426
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	2 cut(s)	266, 940
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	1426
AvrII	CCTAGG	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	1245
BanI	GGYRCC	1 cut(s)	256
BbvI	GCAGC	5 cut(s)	276, 480, 482, 485, 584
BcgI	CGANNNNNNTGC	2 cut(s)	1018, 1052
BciT130I	CCWGG	3 cut(s)	149, 857, 1111
BciVI	GTATCC	2 cut(s)	863, 1070
BclI	TGATCA	3 cut(s)	327, 432, 1488
BcnI	CCSGG	1 cut(s)	728
BcoDI	GTCTC	4 cut(s)	117, 149, 466, 1613
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	3 cut(s)	42, 102, 141
BfmI	CTRYAG	3 cut(s)	570, 952, 1671
BfuI	GTATCC	2 cut(s)	863, 1070
BisI	GCNGC	5 cut(s)	290, 471, 474, 494, 573
BlnI	CCTAGG	1 cut(s)	101
BlsI	GCNGC	5 cut(s)	291, 472, 475, 495, 574
Bme1390I	CCNGG	4 cut(s)	149, 728, 857, 1111
Bme18I	GGWCC	1 cut(s)	1426
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	1426
BmiI	GGNNCC	2 cut(s)	258, 1427
BmrFI	CCNGG	4 cut(s)	149, 728, 857, 1111
BmsI	GCATC	8 cut(s)	400, 673, 1093, 1198, 1221, 1424, 1456, 1666
BplI	GAGNNNNNCTC	2 cut(s)	1590, 1622
BpmI	CTGGAG	1 cut(s)	131
BpuEI	CTTGAG	2 cut(s)	80, 470
BpuMI	CCSGG	1 cut(s)	728
BsaHI	GRCGYC	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	6 cut(s)	101, 465, 499, 726, 1110, 1597
Bse1I	ACTGG	2 cut(s)	778, 1284
Bse3DI	GCAATG	1 cut(s)	1317
BseBI	CCWGG	3 cut(s)	149, 857, 1111
BseDI	CCNNGG	6 cut(s)	101, 465, 499, 726, 1110, 1597
BseGI	GGATG	7 cut(s)	157, 888, 973, 1101, 1105, 1183, 1288
BseMI	GCAATG	1 cut(s)	1317
BseMII	CTCAG	1 cut(s)	714
BseNI	ACTGG	2 cut(s)	778, 1284
BseXI	GCAGC	5 cut(s)	276, 480, 482, 485, 584
BshFI	GGCC	3 cut(s)	777, 1245, 1287
BshNI	GGYRCC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	728
BslFI	GGGAC	3 cut(s)	1439, 1509, 1650
BsmAI	GTCTC	4 cut(s)	117, 149, 466, 1613
BsmFI	GGGAC	3 cut(s)	1439, 1509, 1650
BsmI	GAATGC	2 cut(s)	520, 1346
BsnI	GGCC	3 cut(s)	777, 1245, 1287
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	609
Bsp143I	GATC	5 cut(s)	327, 432, 1015, 1488, 1726
BspACI	CCGC	2 cut(s)	7, 1662
BspANI	GGCC	3 cut(s)	777, 1245, 1287
BspCNI	CTCAG	1 cut(s)	713
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	258, 1427
BspMAI	CTGCAG	2 cut(s)	574, 1675
BspPI	GGATC	1 cut(s)	1721
BspQI	GCTCTTC	1 cut(s)	701
BspT107I	GGYRCC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	1317
BsrI	ACTGG	2 cut(s)	778, 1284
BssECI	CCNNGG	6 cut(s)	101, 465, 499, 726, 1110, 1597
BssMI	GATC	5 cut(s)	327, 432, 1015, 1488, 1726
BssNI	GRCGYC	1 cut(s)	732
BssT1I	CCWWGG	2 cut(s)	101, 499
Bst2UI	CCWGG	3 cut(s)	149, 857, 1111
Bst4CI	ACNGT	6 cut(s)	946, 956, 977, 1082, 1439, 1624
Bst6I	CTCTTC	2 cut(s)	25, 701
BstACI	GRCGYC	1 cut(s)	732
BstC8I	GCNNGC	1 cut(s)	1236
BstDEI	CTNAG	3 cut(s)	587, 700, 1538
BstF5I	GGATG	7 cut(s)	157, 888, 973, 1101, 1105, 1183, 1288
BstKTI	GATC	5 cut(s)	330, 435, 1018, 1491, 1729
BstMAI	GTCTC	4 cut(s)	117, 149, 466, 1613
BstMBI	GATC	5 cut(s)	327, 432, 1015, 1488, 1726
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 193, 774
BstNI	CCWGG	3 cut(s)	149, 857, 1111
BstSCI	CCNGG	4 cut(s)	147, 726, 855, 1109
BstSFI	CTRYAG	3 cut(s)	570, 952, 1671
BstV1I	GCAGC	5 cut(s)	276, 480, 482, 485, 584
BstX2I	RGATCY	1 cut(s)	1726
BstYI	RGATCY	1 cut(s)	1726
BsuI	GTATCC	2 cut(s)	863, 1070
BsuRI	GGCC	3 cut(s)	777, 1245, 1287
BtsCI	GGATG	7 cut(s)	157, 888, 973, 1101, 1105, 1183, 1288
BtsI	GCAGTG	1 cut(s)	1638
BtsIMutI	CAGTG	2 cut(s)	785, 1638
Cac8I	GCNNGC	1 cut(s)	1236
CciI	TCATGA	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	1426
CseI	GACGC	1 cut(s)	176
CviAII	CATG	5 cut(s)	325, 553, 758, 1345, 1680
DdeI	CTNAG	3 cut(s)	587, 700, 1538
DpnI	GATC	5 cut(s)	329, 434, 1017, 1490, 1728
DpnII	GATC	5 cut(s)	327, 432, 1015, 1488, 1726
DraI	TTTAAA	1 cut(s)	391
DraIII	CACNNNGTG	2 cut(s)	280, 902
EaeI	YGGCCR	1 cut(s)	1243
Eam1104I	CTCTTC	2 cut(s)	25, 701
EarI	CTCTTC	2 cut(s)	25, 701
Eco130I	CCWWGG	2 cut(s)	101, 499
Eco31I	GGTCTC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	826
Eco47I	GGWCC	1 cut(s)	1426
Eco57I	CTGAAG	1 cut(s)	832
Eco88I	CYCGRG	1 cut(s)	609
EcoRII	CCWGG	3 cut(s)	147, 855, 1109
EcoRV	GATATC	1 cut(s)	826
EcoT14I	CCWWGG	2 cut(s)	101, 499
EcoT22I	ATGCAT	3 cut(s)	688, 1346, 1681
ErhI	CCWWGG	2 cut(s)	101, 499
FaeI	CATG	5 cut(s)	328, 556, 761, 1348, 1683
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	3 cut(s)	1439, 1509, 1650
FatI	CATG	5 cut(s)	324, 552, 757, 1344, 1679
FbaI	TGATCA	3 cut(s)	327, 432, 1488
FblI	GTMKAC	2 cut(s)	65, 979
Fnu4HI	GCNGC	5 cut(s)	290, 471, 474, 494, 573
FokI	GGATG	7 cut(s)	164, 895, 980, 1108, 1112, 1190, 1295
Fsp4HI	GCNGC	5 cut(s)	290, 471, 474, 494, 573
FspBI	CTAG	3 cut(s)	42, 102, 141
GluI	GCNGC	5 cut(s)	290, 471, 474, 494, 573
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	777, 1245, 1287
HapII	CCGG	1 cut(s)	728
HgaI	GACGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	732
Hin1II	CATG	5 cut(s)	328, 556, 761, 1348, 1683
HindIII	AAGCTT	3 cut(s)	90, 160, 1236
HinfI	GANTC	4 cut(s)	62, 360, 754, 919
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	2 cut(s)	266, 940
Hpy166II	GTNNAC	6 cut(s)	66, 522, 959, 980, 1139, 1645
Hpy188I	TCNGA	5 cut(s)	432, 466, 703, 1132, 1598
Hpy188III	TCNNGA	9 cut(s)	59, 302, 325, 609, 611, 680, 832, 1121, 1646
Hpy8I	GTNNAC	6 cut(s)	66, 522, 959, 980, 1139, 1645
HpyAV	CCTTC	3 cut(s)	207, 856, 1382
HpyCH4III	ACNGT	6 cut(s)	946, 956, 977, 1082, 1439, 1624
HpyCH4IV	ACGT	2 cut(s)	732, 1475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 193, 774
HpyF3I	CTNAG	3 cut(s)	587, 700, 1538
HpySE526I	ACGT	2 cut(s)	732, 1475
Hsp92I	GRCGYC	1 cut(s)	732
Hsp92II	CATG	5 cut(s)	328, 556, 761, 1348, 1683
Ksp22I	TGATCA	3 cut(s)	327, 432, 1488
Kzo9I	GATC	5 cut(s)	327, 432, 1015, 1488, 1726
LguI	GCTCTTC	1 cut(s)	701
LmnI	GCTCC	1 cut(s)	501
Lsp1109I	GCAGC	5 cut(s)	276, 480, 482, 485, 584
LweI	GCATC	8 cut(s)	400, 673, 1093, 1198, 1221, 1424, 1456, 1666
MaeI	CTAG	3 cut(s)	42, 102, 141
MaeII	ACGT	2 cut(s)	732, 1475
MaeIII	GTNAC	3 cut(s)	136, 841, 946
MalI	GATC	5 cut(s)	329, 434, 1017, 1490, 1728
MboI	GATC	5 cut(s)	327, 432, 1015, 1488, 1726
MboII	GAAGA	5 cut(s)	12, 688, 820, 1209, 1562
MfeI	CAATTG	2 cut(s)	239, 581
MflI	RGATCY	1 cut(s)	1726
MlsI	TGGCCA	1 cut(s)	1245
MluNI	TGGCCA	1 cut(s)	1245
MlyI	GAGTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	1245
Mph1103I	ATGCAT	3 cut(s)	688, 1346, 1681
MroXI	GAANNNNTTC	1 cut(s)	1220
MscI	TGGCCA	1 cut(s)	1245
MseI	TTAA	6 cut(s)	158, 390, 690, 1044, 1514, 1694
MslI	CAYNNNNRTG	1 cut(s)	1067
Msp20I	TGGCCA	1 cut(s)	1245
MspA1I	CMGCKG	1 cut(s)	1662
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	4 cut(s)	149, 728, 857, 1111
MunI	CAATTG	2 cut(s)	239, 581
Mva1269I	GAATGC	2 cut(s)	520, 1346
MvaI	CCWGG	3 cut(s)	149, 857, 1111
MwoI	GCNNNNNNNGC	3 cut(s)	184, 193, 774
NciI	CCSGG	1 cut(s)	728
NdeII	GATC	5 cut(s)	327, 432, 1015, 1488, 1726
NlaIII	CATG	5 cut(s)	328, 556, 761, 1348, 1683
NlaIV	GGNNCC	2 cut(s)	258, 1427
NmuCI	GTSAC	2 cut(s)	136, 946
NsiI	ATGCAT	3 cut(s)	688, 1346, 1681
PaeR7I	CTCGAG	1 cut(s)	609
PagI	TCATGA	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	701
PctI	GAATGC	2 cut(s)	520, 1346
PdmI	GAANNNNTTC	1 cut(s)	1220
PfeI	GAWTC	3 cut(s)	360, 754, 919
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	5 cut(s)	291, 472, 475, 495, 574
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	1694
PsiI	TTATAA	1 cut(s)	1059
Psp6I	CCWGG	3 cut(s)	147, 855, 1109
PspGI	CCWGG	3 cut(s)	147, 855, 1109
PspN4I	GGNNCC	2 cut(s)	258, 1427
PspPI	GGNCC	1 cut(s)	1426
PstI	CTGCAG	2 cut(s)	574, 1675
PsuI	RGATCY	1 cut(s)	1726
RseI	CAYNNNNRTG	1 cut(s)	1067
SapI	GCTCTTC	1 cut(s)	701
SaqAI	TTAA	6 cut(s)	158, 390, 690, 1044, 1514, 1694
SatI	GCNGC	5 cut(s)	290, 471, 474, 494, 573
Sau3AI	GATC	5 cut(s)	327, 432, 1015, 1488, 1726
Sau96I	GGNCC	1 cut(s)	1426
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	4 cut(s)	149, 728, 857, 1111
SfaNI	GCATC	8 cut(s)	400, 673, 1093, 1198, 1221, 1424, 1456, 1666
SfcI	CTRYAG	3 cut(s)	570, 952, 1671
Sfr274I	CTCGAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	1426
SlaI	CTCGAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	1067
SmlI	CTYRAG	3 cut(s)	59, 449, 609
SmoI	CTYRAG	3 cut(s)	59, 449, 609
SpeI	ACTAGT	1 cut(s)	140
SsiI	CCGC	2 cut(s)	7, 1662
SspI	AATATT	2 cut(s)	1258, 1378
SspMI	CTAG	3 cut(s)	42, 102, 141
StyD4I	CCNGG	4 cut(s)	147, 726, 855, 1109
StyI	CCWWGG	2 cut(s)	101, 499
TaaI	ACNGT	6 cut(s)	946, 956, 977, 1082, 1439, 1624
TaiI	ACGT	2 cut(s)	735, 1478
TaqI	TCGA	2 cut(s)	610, 861
TfiI	GAWTC	3 cut(s)	360, 754, 919
Tru1I	TTAA	6 cut(s)	158, 390, 690, 1044, 1514, 1694
Tru9I	TTAA	6 cut(s)	158, 390, 690, 1044, 1514, 1694
TscAI	CASTG	2 cut(s)	785, 1638
TseFI	GTSAC	2 cut(s)	136, 946
TseI	GCWGC	5 cut(s)	289, 470, 473, 493, 572
Tsp45I	GTSAC	2 cut(s)	136, 946
TspDTI	ATGAA	7 cut(s)	71, 417, 746, 1040, 1085, 1361, 1536
TspGWI	ACGGA	1 cut(s)	1108
TspRI	CASTG	2 cut(s)	785, 1638
VpaK11BI	GGWCC	1 cut(s)	1426
VspI	ATTAAT	1 cut(s)	1694
XapI	RAATTY	2 cut(s)	392, 835
XhoI	CTCGAG	1 cut(s)	609
XmaJI	CCTAGG	1 cut(s)	101
XmiI	GTMKAC	2 cut(s)	65, 979
XmnI	GAANNNNTTC	1 cut(s)	1220
XspI	CTAG	3 cut(s)	42, 102, 141
ZraI	GACGTC	1 cut(s)	733
Zsp2I	ATGCAT	3 cut(s)	688, 1346, 1681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.