Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006952.1

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

53252 .. 55024

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006952.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1773 bp

atgatgcggagagctgctgctgcttcttcttcttattgcaacaacagaggtagaggaggaggaggtatgcctcgtcttcattctattcttgtttcctttcattctcaagcttcagtggccagcactattagaaacccacccaagctcactaatcttggggttggggatggcgtaagtttgttcaatgagatgcttcaaatgcgtcctcttccttgtgttgtccgtttcaatcaaatcatgggtcacatcgcaaaattgaaacattatcaggcagtcatttctctgtatacccaaatggataggttaagagttgttcccgatgcttacactctcaatattatcatcaattgcttttgtcatttgaaccaaatgggattcagtttgtctgtgttgggaaaattcttcaaatttggtattcaaccaaatatcacaaccctcaacactcttgtcaagggctttttcattcaagggaaagtgtctcaggcagcactacttttcagcacaatggtggagcaaggttgtaagccaaatgatgttactttcagaacgctaataaagggctattgcatgatgggaaataatactgcagctgttcaattgcttaggaagatggaacaacaatctcgagattgtaagcctagtgtggttgtctataatatcatcattgacagtctctgtaaggatacactagttcctgatgcagttaagctcttctcagaaatgatttgtaggggtatagcccctgacgtcattacttatacctctttgattcatggagtttgcaaattaggccagtggaaagaagctacaagattgttgaatgagatggtcagtaaagatatcttcccgaatttagtaacctacagtatcctggtcgatacactttgtaaggaggggatggttgtggaagcacaaagtgtgcttgaaatgatgattcaaagaggtatcaaacctgatacagtcacctacagttcacttatggatggctactgtctgcgaggagaaatggagaaagctaaagaggtttttgatatgatgaatagcaagggctccgttgttaatgcttatagttataccatactgataaatggatattgtaggcgtaaaaggatgaatgaggccatcaggctttttcatgaaatgtctgataggggactggttccaaataccgtcacatatactgctcttatggatggtttttgcaaagtgggaagaatactagatgcccagagattgttcagtaagttgcaagcttgtggccaagttcttgatgttcaaacttatgccgttctactggatggcctgtttaaaaaccaacaacttgctatggcaatggagttgttcggggagttggaatgcatgaagctggatttgaatatagtaatatacagtactcttattgaaggtttgtgtatagctggaaaaattgaatctgcaaaggaccacttttacggtttatcatcaaaaggacttgaacctgatgcgaggacgtacactataatgatcaagggactttgtgaaggaggcttaattagtgaagcagaaaagttgcttagggaaatggaacagaaaagcgttgctcctgatgattgcacatataacacaattatccgagggtttctcaataatgacgagacagtaaaggcagtgggacttgttcacgaaatgatggacaggggtttctctgcagatgcatggacggtggaattaatcattggtttattgtctaaagaaaatgtagatcctgctttgttgtcatggatagaaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

590

Amino Acids

65.8

Weight (kDa)

8.29

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	1736
AcoI	YGGCCR	2 cut(s)	117, 1258
AcsI	RAATTY	3 cut(s)	398, 407, 850
AcuI	CTGAAG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	747
AdeI	CACNNNGTG	1 cut(s)	917
AfaI	GTAC	2 cut(s)	1393, 1493
AhlI	ACTAGT	1 cut(s)	688
AjnI	CCWGG	1 cut(s)	870
AjuI	GAANNNNNNNTTGG	2 cut(s)	1698, 1730
AleI	CACNNNNGTG	1 cut(s)	506
Alw26I	GTCTC	3 cut(s)	483, 677, 1628
AlwI	GGATC	1 cut(s)	1736
AlwNI	CAGNNNCTG	1 cut(s)	675
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	5 cut(s)	117, 790, 1119, 1258, 1300
ApeKI	GCWGC	5 cut(s)	14, 17, 20, 485, 587
ApoI	RAATTY	3 cut(s)	398, 407, 850
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AseI	ATTAAT	1 cut(s)	1709
AspS9I	GGNCC	1 cut(s)	1441
AsuHPI	GGTGA	1 cut(s)	955
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	1441
BaeI	ACNNNNGTAYC	2 cut(s)	675, 708
BalI	TGGCCA	2 cut(s)	119, 1260
BanII	GRGCYC	1 cut(s)	1052
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	4 cut(s)	4, 7, 497, 599
BceAI	ACGGC	1 cut(s)	1271
BciT130I	CCWGG	1 cut(s)	872
BciVI	GTATCC	2 cut(s)	676, 878
BclI	TGATCA	1 cut(s)	1503
BcoDI	GTCTC	3 cut(s)	483, 677, 1628
BcuI	ACTAGT	1 cut(s)	688
BfaI	CTAG	3 cut(s)	639, 689, 1220
BfmI	CTRYAG	4 cut(s)	585, 862, 967, 1686
BfuI	GTATCC	2 cut(s)	676, 878
BisI	GCNGC	5 cut(s)	15, 18, 21, 486, 588
BlsI	GCNGC	5 cut(s)	16, 19, 22, 487, 589
BmcAI	AGTACT	1 cut(s)	1393
Bme1390I	CCNGG	1 cut(s)	872
Bme18I	GGWCC	1 cut(s)	1441
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	1441
BmiI	GGNNCC	2 cut(s)	1051, 1161
BmrFI	CCNGG	1 cut(s)	872
BmsI	GCATC	6 cut(s)	180, 310, 688, 1213, 1471, 1681
BpiI	GAAGAC	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	1605, 1637
Bpu10I	CCTNAGC	2 cut(s)	602, 1553
BpuEI	CTTGAG	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	747
BsaJI	CCNNGG	1 cut(s)	1612
Bse1I	ACTGG	3 cut(s)	793, 1161, 1299
Bse3DI	GCAATG	1 cut(s)	1338
BseBI	CCWGG	1 cut(s)	872
BseDI	CCNNGG	1 cut(s)	1612
BseGI	GGATG	6 cut(s)	172, 903, 988, 1116, 1198, 1303
BseMI	GCAATG	1 cut(s)	1338
BseMII	CTCAG	2 cut(s)	494, 729
BseNI	ACTGG	3 cut(s)	793, 1161, 1299
BseRI	GAGGAG	4 cut(s)	69, 72, 75, 1014
BseXI	GCAGC	4 cut(s)	4, 7, 497, 599
BshFI	GGCC	5 cut(s)	119, 792, 1121, 1260, 1302
BsiHKCI	CYCGRG	1 cut(s)	624
BslFI	GGGAC	3 cut(s)	1167, 1524, 1665
BsmAI	GTCTC	3 cut(s)	483, 677, 1628
BsmFI	GGGAC	3 cut(s)	1167, 1524, 1665
BsmI	GAATGC	1 cut(s)	1361
BsnI	GGCC	5 cut(s)	119, 792, 1121, 1260, 1302
BsoBI	CYCGRG	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	1052
Bsp143I	GATC	2 cut(s)	1503, 1741
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	5 cut(s)	119, 792, 1121, 1260, 1302
BspCNI	CTCAG	2 cut(s)	493, 728
BspHI	TCATGA	1 cut(s)	1135
BspLI	GGNNCC	2 cut(s)	1051, 1161
BspMAI	CTGCAG	2 cut(s)	589, 1690
BspPI	GGATC	1 cut(s)	1736
BspQI	GCTCTTC	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	1338
BsrI	ACTGG	3 cut(s)	793, 1161, 1299
BssECI	CCNNGG	1 cut(s)	1612
BssMI	GATC	2 cut(s)	1503, 1741
BssNAI	GTATAC	1 cut(s)	288
BssNI	GRCGYC	1 cut(s)	747
Bst1107I	GTATAC	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	872
Bst6I	CTCTTC	2 cut(s)	213, 716
BstACI	GRCGYC	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	121, 1251
BstDEI	CTNAG	4 cut(s)	480, 602, 715, 1553
BstF5I	GGATG	6 cut(s)	172, 903, 988, 1116, 1198, 1303
BstKTI	GATC	2 cut(s)	1506, 1744
BstMAI	GTCTC	3 cut(s)	483, 677, 1628
BstMBI	GATC	2 cut(s)	1503, 1741
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 116, 199, 789
BstNI	CCWGG	1 cut(s)	872
BstSCI	CCNGG	1 cut(s)	870
BstSFI	CTRYAG	4 cut(s)	585, 862, 967, 1686
BstV1I	GCAGC	4 cut(s)	4, 7, 497, 599
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	1741
BstYI	RGATCY	1 cut(s)	1741
BstZ17I	GTATAC	1 cut(s)	288
BsuI	GTATCC	2 cut(s)	676, 878
BsuRI	GGCC	5 cut(s)	119, 792, 1121, 1260, 1302
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	6 cut(s)	172, 903, 988, 1116, 1198, 1303
BtsI	GCAGTG	1 cut(s)	1653
BtsIMutI	CAGTG	3 cut(s)	120, 800, 1653
Cac8I	GCNNGC	2 cut(s)	121, 1251
CaiI	CAGNNNCTG	1 cut(s)	675
CciI	TCATGA	1 cut(s)	1135
Cfr13I	GGNCC	1 cut(s)	1441
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	1392, 1492
CviAII	CATG	7 cut(s)	238, 568, 773, 1136, 1360, 1695, 1758
CviQI	GTAC	2 cut(s)	1392, 1492
DdeI	CTNAG	4 cut(s)	480, 602, 715, 1553
DpnI	GATC	2 cut(s)	1505, 1743
DpnII	GATC	2 cut(s)	1503, 1741
DraI	TTTAAA	1 cut(s)	1309
DraIII	CACNNNGTG	1 cut(s)	917
EaeI	YGGCCR	2 cut(s)	117, 1258
Eam1104I	CTCTTC	2 cut(s)	213, 716
EarI	CTCTTC	2 cut(s)	213, 716
Eco24I	GRGCYC	1 cut(s)	1052
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	1441
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	870
EcoRV	GATATC	1 cut(s)	841
EcoT22I	ATGCAT	2 cut(s)	1361, 1696
EcoT38I	GRGCYC	1 cut(s)	1052
FaeI	CATG	7 cut(s)	241, 571, 776, 1139, 1363, 1698, 1761
FalI	AAGNNNNNCTT	2 cut(s)	1430, 1462
FaqI	GGGAC	3 cut(s)	1167, 1524, 1665
FatI	CATG	7 cut(s)	237, 567, 772, 1135, 1359, 1694, 1757
FbaI	TGATCA	1 cut(s)	1503
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	5 cut(s)	15, 18, 21, 486, 588
FokI	GGATG	6 cut(s)	179, 910, 995, 1123, 1205, 1310
FriOI	GRGCYC	1 cut(s)	1052
Fsp4HI	GCNGC	5 cut(s)	15, 18, 21, 486, 588
FspBI	CTAG	3 cut(s)	639, 689, 1220
GluI	GCNGC	5 cut(s)	15, 18, 21, 486, 588
HaeIII	GGCC	5 cut(s)	119, 792, 1121, 1260, 1302
HgaI	GACGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	747
Hin1II	CATG	7 cut(s)	241, 571, 776, 1139, 1363, 1698, 1761
HindIII	AAGCTT	2 cut(s)	108, 1251
HinfI	GANTC	4 cut(s)	375, 769, 934, 1430
HphI	GGTGA	1 cut(s)	955
Hpy166II	GTNNAC	4 cut(s)	288, 974, 1494, 1660
Hpy188I	TCNGA	4 cut(s)	545, 718, 1147, 1613
Hpy188III	TCNNGA	9 cut(s)	317, 624, 626, 695, 847, 1136, 1268, 1583, 1661
Hpy8I	GTNNAC	4 cut(s)	288, 974, 1494, 1660
HpyAV	CCTTC	2 cut(s)	1397, 1514
HpyCH4IV	ACGT	2 cut(s)	747, 1490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 116, 199, 789
HpyF3I	CTNAG	4 cut(s)	480, 602, 715, 1553
HpySE526I	ACGT	2 cut(s)	747, 1490
Hsp92I	GRCGYC	1 cut(s)	747
Hsp92II	CATG	7 cut(s)	241, 571, 776, 1139, 1363, 1698, 1761
Ksp22I	TGATCA	1 cut(s)	1503
Kzo9I	GATC	2 cut(s)	1503, 1741
LguI	GCTCTTC	1 cut(s)	716
LmnI	GCTCC	3 cut(s)	511, 1055, 1585
Lsp1109I	GCAGC	4 cut(s)	4, 7, 497, 599
LweI	GCATC	6 cut(s)	180, 310, 688, 1213, 1471, 1681
MaeI	CTAG	3 cut(s)	639, 689, 1220
MaeII	ACGT	2 cut(s)	747, 1490
MaeIII	GTNAC	5 cut(s)	242, 535, 856, 961, 1171
MalI	GATC	2 cut(s)	1505, 1743
MboI	GATC	2 cut(s)	1503, 1741
MboII	GAAGA	9 cut(s)	18, 21, 68, 200, 394, 619, 703, 835, 1224
MfeI	CAATTG	2 cut(s)	346, 596
MflI	RGATCY	1 cut(s)	1741
MhlI	GDGCHC	1 cut(s)	1052
MlsI	TGGCCA	2 cut(s)	119, 1260
MluNI	TGGCCA	2 cut(s)	119, 1260
MmeI	TCCRAC	1 cut(s)	1332
Mox20I	TGGCCA	2 cut(s)	119, 1260
Mph1103I	ATGCAT	2 cut(s)	1361, 1696
MscI	TGGCCA	2 cut(s)	119, 1260
MseI	TTAA	6 cut(s)	305, 705, 1059, 1308, 1529, 1709
MslI	CAYNNNNRTG	2 cut(s)	506, 1499
Msp20I	TGGCCA	2 cut(s)	119, 1260
MspA1I	CMGCKG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	872
MunI	CAATTG	2 cut(s)	346, 596
Mva1269I	GAATGC	1 cut(s)	1361
MvaI	CCWGG	1 cut(s)	872
MwoI	GCNNNNNNNGC	4 cut(s)	20, 116, 199, 789
NdeII	GATC	2 cut(s)	1503, 1741
NlaIII	CATG	7 cut(s)	241, 571, 776, 1139, 1363, 1698, 1761
NlaIV	GGNNCC	2 cut(s)	1051, 1161
NmuCI	GTSAC	3 cut(s)	242, 961, 1171
NsiI	ATGCAT	2 cut(s)	1361, 1696
OliI	CACNNNNGTG	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	624
PagI	TCATGA	1 cut(s)	1135
PciSI	GCTCTTC	1 cut(s)	716
PctI	GAATGC	1 cut(s)	1361
PfeI	GAWTC	4 cut(s)	375, 769, 934, 1430
PkrI	GCNGC	5 cut(s)	16, 19, 22, 487, 589
PshBI	ATTAAT	1 cut(s)	1709
Psp6I	CCWGG	1 cut(s)	870
PspGI	CCWGG	1 cut(s)	870
PspN4I	GGNNCC	2 cut(s)	1051, 1161
PspPI	GGNCC	1 cut(s)	1441
PstI	CTGCAG	2 cut(s)	589, 1690
PstNI	CAGNNNCTG	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	1741
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	2 cut(s)	1393, 1493
RsaNI	GTAC	2 cut(s)	1392, 1492
RseI	CAYNNNNRTG	2 cut(s)	506, 1499
SapI	GCTCTTC	1 cut(s)	716
SaqAI	TTAA	6 cut(s)	305, 705, 1059, 1308, 1529, 1709
SatI	GCNGC	5 cut(s)	15, 18, 21, 486, 588
Sau3AI	GATC	2 cut(s)	1503, 1741
Sau96I	GGNCC	1 cut(s)	1441
ScaI	AGTACT	1 cut(s)	1393
ScrFI	CCNGG	1 cut(s)	872
SduI	GDGCHC	1 cut(s)	1052
SfaNI	GCATC	6 cut(s)	180, 310, 688, 1213, 1471, 1681
SfcI	CTRYAG	4 cut(s)	585, 862, 967, 1686
Sfr274I	CTCGAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	1441
SlaI	CTCGAG	1 cut(s)	624
SmiMI	CAYNNNNRTG	2 cut(s)	506, 1499
SmlI	CTYRAG	2 cut(s)	105, 624
SmoI	CTYRAG	2 cut(s)	105, 624
SpeI	ACTAGT	1 cut(s)	688
SsiI	CCGC	1 cut(s)	7
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	3 cut(s)	639, 689, 1220
StyD4I	CCNGG	1 cut(s)	870
TaiI	ACGT	2 cut(s)	750, 1493
TaqI	TCGA	2 cut(s)	625, 876
TatI	WGTACW	1 cut(s)	1391
TfiI	GAWTC	4 cut(s)	375, 769, 934, 1430
Tru1I	TTAA	6 cut(s)	305, 705, 1059, 1308, 1529, 1709
Tru9I	TTAA	6 cut(s)	305, 705, 1059, 1308, 1529, 1709
TscAI	CASTG	3 cut(s)	120, 800, 1653
TseFI	GTSAC	3 cut(s)	242, 961, 1171
TseI	GCWGC	5 cut(s)	14, 17, 20, 485, 587
Tsp45I	GTSAC	3 cut(s)	242, 961, 1171
TspDTI	ATGAA	9 cut(s)	68, 89, 451, 761, 1052, 1124, 1127, 1152, 1376
TspGWI	ACGGA	2 cut(s)	212, 1042
TspRI	CASTG	3 cut(s)	120, 800, 1653
VpaK11BI	GGWCC	1 cut(s)	1441
VspI	ATTAAT	1 cut(s)	1709
XapI	RAATTY	3 cut(s)	398, 407, 850
XhoI	CTCGAG	1 cut(s)	624
XmiI	GTMKAC	1 cut(s)	287
XspI	CTAG	3 cut(s)	639, 689, 1220
ZraI	GACGTC	1 cut(s)	748
ZrmI	AGTACT	1 cut(s)	1393
Zsp2I	ATGCAT	2 cut(s)	1361, 1696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.