Rmu_sc0013320.1_g000009

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013320.1
Physical Location & Seq
Forward (+)
31098 .. 33837
2740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013320.1_g000009.1.cds

Sequence Viewer

Length: 1617 bp
atgatgcggagagctgctgctgctgcttcttcttcttcttattgcaacaacagaggtagaggaggaggaggtatgcctcgtcttcattctattcttgtttcccttcattctcaagcttcagtggccagcactattagaaacccacccaagctcactaatcttggggttggggatggcgtaagtttgttcaatgagatgcttcaaatgcgtcctcttccttgtgttgtccgtttcaatcaaatcatgggtcacatcgcaaaattgaaacattatcaggcagtcatttctctgtatacccaaatggataggttaagaattgttcccgatgcttacactctcaatattatcatcaattgcttttgtcatttgaaccaaatgggattcagtttgtctgtgttgggaaaattcttcaaatttggtattcaaccaaatatcacaaccctcaacactcttgtcaagggctttttcattcaagggaaagtgtctcaggcagcactacttttcagcacaatggtggagcaaggttgtaagccaaatgatgttactttcagaacgctaataaagggctattgcatgatgggaaataatactgcagctgttcaattgcttaggaagatggaacaacaatctcgagattgtaagcctaatgtggttgtctataatatcatcattgacagtctctgtaaggatacactagttcctgatgcagttaagctcttctcagaaatgatttgtaggggtatagcccctgacgtcattacttatacctctttgattcatggagtttgcaaattaggccagtggaaagaagctacgagattgttgaatgagatggtcagtaaaggtatcttcccgaatttagtaacctacagtatcctggtcgatacactttgtaaggaggggatggttgtggaagcacaaagtgtgcttgaaatgatgattcaaagaggtatcaaacctgatacagtcacctacagttcacttatggatggctactgtctgcgaggagaaatggagaaagctaaagaggtttttgatatgatgaatagcaagggctccgctgttaatgcttatagttataacatactgatgaatggatattgtaagcataaacagatagatgatgccaccagggtttttcaggaaatgtctgatagtggactgcttccaaataccattacatatactgctcttatggatggtctttgcaaagtaggaagaatacaagatgcacagaaattgttcagtaagatgcaagcttgtggccaacttccaaatattcaaacttatgctgttttactggatggcctgtgtaaaaaccaacaacttgcaatggcattggagttgtttagagagatggaatgcatgaagctggatttggatatagtaatttacggtccagggactatgacaccatgggacccagtgttaagtaagtccagtggtcctgacagggagttgcagaagtgtaaggaggttgtgcattgtgtcacactacatgagattgatgtcatcaacagcaggaaatctgttgaagtgtttaagcctgccagttcagtacaatcaaattttaggcatatcttgcattgcgagcatgctgctgtggataagtcttag

Protein Analysis

538

Amino Acids

59.88

Weight (kDa)

8.76

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1080
AatII GACGTC 1 cut(s) 756
AccI GTMKAC 1 cut(s) 293
AciI CCGC 2 cut(s) 7, 1059
AcoI YGGCCR 2 cut(s) 123, 1264
AcsI RAATTY 4 cut(s) 404, 413, 856, 1567
AcuI CTGAAG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 753
AdeI CACNNNGTG 1 cut(s) 923
AfaI GTAC 1 cut(s) 1560
AhlI ACTAGT 1 cut(s) 694
AjnI CCWGG 3 cut(s) 876, 1130, 1399
AjuI GAANNNNNNNTTGG 2 cut(s) 1361, 1393
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 9 cut(s) 14, 116, 151, 596, 715, 812, 1022, 1259, 1372
AluI AGCT 9 cut(s) 14, 116, 151, 596, 715, 812, 1022, 1259, 1372
Alw26I GTCTC 2 cut(s) 489, 683
AlwNI CAGNNNCTG 1 cut(s) 681
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 4 cut(s) 123, 796, 1264, 1306
ApeKI GCWGC 7 cut(s) 14, 17, 20, 23, 491, 593, 1598
ApoI RAATTY 4 cut(s) 404, 413, 856, 1567
ArsI GACNNNNNNTTYG 2 cut(s) 232, 264
Asp700I GAANNNNTTC 1 cut(s) 1241
AspS9I GGNCC 3 cut(s) 1397, 1420, 1445
AsuHPI GGTGA 1 cut(s) 961
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 3 cut(s) 1397, 1420, 1445
BaeI ACNNNNGTAYC 2 cut(s) 681, 714
BalI TGGCCA 2 cut(s) 125, 1266
BanII GRGCYC 1 cut(s) 1058
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 6 cut(s) 4, 7, 10, 503, 605, 1585
BccI CCATC 9 cut(s) 167, 571, 610, 826, 898, 983, 1193, 1298, 1351
BcgI CGANNNNNNTGC 2 cut(s) 1580, 1614
BciT130I CCWGG 3 cut(s) 878, 1132, 1401
BciVI GTATCC 2 cut(s) 682, 884
BcoDI GTCTC 2 cut(s) 489, 683
BcuI ACTAGT 1 cut(s) 694
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 3 cut(s) 591, 868, 973
BfuI GTATCC 2 cut(s) 682, 884
BisI GCNGC 7 cut(s) 15, 18, 21, 24, 492, 594, 1599
BlsI GCNGC 7 cut(s) 16, 19, 22, 25, 493, 595, 1600
Bme1390I CCNGG 3 cut(s) 878, 1132, 1401
Bme18I GGWCC 3 cut(s) 1397, 1420, 1445
BmeT110I CYCGRG 1 cut(s) 630
BmgT120I GGNCC 3 cut(s) 1397, 1420, 1445
BmiI GGNNCC 3 cut(s) 1057, 1421, 1422
BmrFI CCNGG 3 cut(s) 878, 1132, 1401
BmrI ACTGGG 1 cut(s) 1418
BmsI GCATC 6 cut(s) 186, 316, 694, 1114, 1219, 1242
BmuI ACTGGG 1 cut(s) 1418
BpiI GAAGAC 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 753
BsaJI CCNNGG 3 cut(s) 1131, 1400, 1415
Bse1I ACTGG 5 cut(s) 799, 1305, 1424, 1440, 1551
Bse3DI GCAATG 2 cut(s) 1338, 1585
BseBI CCWGG 3 cut(s) 878, 1132, 1401
BseDI CCNNGG 3 cut(s) 1131, 1400, 1415
BseGI GGATG 5 cut(s) 178, 909, 994, 1204, 1309
BseMI GCAATG 2 cut(s) 1338, 1585
BseMII CTCAG 2 cut(s) 500, 735
BseNI ACTGG 5 cut(s) 799, 1305, 1424, 1440, 1551
BseRI GAGGAG 4 cut(s) 75, 78, 81, 1020
BseXI GCAGC 6 cut(s) 4, 7, 10, 503, 605, 1585
BshFI GGCC 4 cut(s) 125, 798, 1266, 1308
BsiHKCI CYCGRG 1 cut(s) 630
BslFI GGGAC 2 cut(s) 1417, 1433
BsmAI GTCTC 2 cut(s) 489, 683
BsmFI GGGAC 2 cut(s) 1417, 1433
BsmI GAATGC 1 cut(s) 1367
BsnI GGCC 4 cut(s) 125, 798, 1266, 1308
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 1058
Bsp19I CCATGG 1 cut(s) 1415
BspACI CCGC 2 cut(s) 7, 1059
BspANI GGCC 4 cut(s) 125, 798, 1266, 1308
BspCNI CTCAG 2 cut(s) 499, 734
BspLI GGNNCC 3 cut(s) 1057, 1421, 1422
BspMAI CTGCAG 1 cut(s) 595
BspQI GCTCTTC 1 cut(s) 722
BsrDI GCAATG 2 cut(s) 1338, 1585
BsrI ACTGG 5 cut(s) 799, 1305, 1424, 1440, 1551
BssECI CCNNGG 3 cut(s) 1131, 1400, 1415
BssNAI GTATAC 1 cut(s) 294
BssNI GRCGYC 1 cut(s) 753
BssT1I CCWWGG 1 cut(s) 1415
Bst1107I GTATAC 1 cut(s) 294
Bst2UI CCWGG 3 cut(s) 878, 1132, 1401
Bst4CI ACNGT 6 cut(s) 677, 872, 967, 977, 998, 1397
Bst6I CTCTTC 2 cut(s) 219, 722
BstACI GRCGYC 1 cut(s) 753
BstAPI GCANNNNNTGC 1 cut(s) 1582
BstC8I GCNNGC 5 cut(s) 127, 1257, 1548, 1592, 1596
BstDEI CTNAG 4 cut(s) 486, 608, 721, 1614
BstDSI CCRYGG 1 cut(s) 1415
BstF5I GGATG 5 cut(s) 178, 909, 994, 1204, 1309
BstMAI GTCTC 2 cut(s) 489, 683
BstMWI GCNNNNNNNGC 8 cut(s) 20, 23, 122, 205, 795, 1067, 1582, 1591
BstNI CCWGG 3 cut(s) 878, 1132, 1401
BstNSI RCATGY 1 cut(s) 1598
BstSCI CCNGG 3 cut(s) 876, 1130, 1399
BstSFI CTRYAG 3 cut(s) 591, 868, 973
BstV1I GCAGC 6 cut(s) 4, 7, 10, 503, 605, 1585
BstV2I GAAGAC 1 cut(s) 74
BstZ17I GTATAC 1 cut(s) 294
BsuI GTATCC 2 cut(s) 682, 884
BsuRI GGCC 4 cut(s) 125, 798, 1266, 1308
BtgI CCRYGG 1 cut(s) 1415
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 5 cut(s) 178, 909, 994, 1204, 1309
BtsIMutI CAGTG 4 cut(s) 126, 806, 1431, 1447
Cac8I GCNNGC 5 cut(s) 127, 1257, 1548, 1592, 1596
CaiI CAGNNNCTG 1 cut(s) 681
Cfr13I GGNCC 3 cut(s) 1397, 1420, 1445
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 1559
CviAII CATG 7 cut(s) 244, 574, 779, 1366, 1416, 1499, 1595
CviQI GTAC 1 cut(s) 1559
DdeI CTNAG 4 cut(s) 486, 608, 721, 1614
DraIII CACNNNGTG 1 cut(s) 923
EaeI YGGCCR 2 cut(s) 123, 1264
Eam1104I CTCTTC 2 cut(s) 219, 722
EarI CTCTTC 2 cut(s) 219, 722
Eco130I CCWWGG 1 cut(s) 1415
Eco24I GRGCYC 1 cut(s) 1058
Eco47I GGWCC 3 cut(s) 1397, 1420, 1445
Eco57I CTGAAG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 1420
EcoRII CCWGG 3 cut(s) 876, 1130, 1399
EcoT14I CCWWGG 1 cut(s) 1415
EcoT22I ATGCAT 1 cut(s) 1367
EcoT38I GRGCYC 1 cut(s) 1058
ErhI CCWWGG 1 cut(s) 1415
FaeI CATG 7 cut(s) 247, 577, 782, 1369, 1419, 1502, 1598
FaqI GGGAC 2 cut(s) 1417, 1433
FatI CATG 7 cut(s) 243, 573, 778, 1365, 1415, 1498, 1594
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 7 cut(s) 15, 18, 21, 24, 492, 594, 1599
FokI GGATG 5 cut(s) 185, 916, 1001, 1211, 1316
FriOI GRGCYC 1 cut(s) 1058
Fsp4HI GCNGC 7 cut(s) 15, 18, 21, 24, 492, 594, 1599
FspBI CTAG 1 cut(s) 695
GluI GCNGC 7 cut(s) 15, 18, 21, 24, 492, 594, 1599
HaeIII GGCC 4 cut(s) 125, 798, 1266, 1308
HgaI GACGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 753
Hin1II CATG 7 cut(s) 247, 577, 782, 1369, 1419, 1502, 1598
HindIII AAGCTT 2 cut(s) 114, 1257
HinfI GANTC 3 cut(s) 381, 775, 940
HphI GGTGA 1 cut(s) 961
Hpy166II GTNNAC 3 cut(s) 294, 980, 1160
Hpy188I TCNGA 3 cut(s) 551, 724, 1153
Hpy188III TCNNGA 7 cut(s) 323, 630, 632, 701, 853, 1142, 1448
Hpy8I GTNNAC 3 cut(s) 294, 980, 1160
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 6 cut(s) 677, 872, 967, 977, 998, 1397
HpyCH4IV ACGT 1 cut(s) 753
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 23, 122, 205, 795, 1067, 1582, 1591
HpyF3I CTNAG 4 cut(s) 486, 608, 721, 1614
HpySE526I ACGT 1 cut(s) 753
Hsp92I GRCGYC 1 cut(s) 753
Hsp92II CATG 7 cut(s) 247, 577, 782, 1369, 1419, 1502, 1598
KflI GGGWCCC 1 cut(s) 1420
LguI GCTCTTC 1 cut(s) 722
LmnI GCTCC 2 cut(s) 517, 1061
Lsp1109I GCAGC 6 cut(s) 4, 7, 10, 503, 605, 1585
LweI GCATC 6 cut(s) 186, 316, 694, 1114, 1219, 1242
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 753
MaeIII GTNAC 5 cut(s) 248, 541, 862, 967, 1489
MfeI CAATTG 2 cut(s) 352, 602
MhlI GDGCHC 1 cut(s) 1058
MlsI TGGCCA 2 cut(s) 125, 1266
MluNI TGGCCA 2 cut(s) 125, 1266
Mox20I TGGCCA 2 cut(s) 125, 1266
Mph1103I ATGCAT 1 cut(s) 1367
MroXI GAANNNNTTC 1 cut(s) 1241
MscI TGGCCA 2 cut(s) 125, 1266
MseI TTAA 5 cut(s) 311, 711, 1065, 1430, 1542
MslI CAYNNNNRTG 2 cut(s) 512, 1088
Msp20I TGGCCA 2 cut(s) 125, 1266
MspA1I CMGCKG 2 cut(s) 596, 1061
MspR9I CCNGG 3 cut(s) 878, 1132, 1401
MunI CAATTG 2 cut(s) 352, 602
Mva1269I GAATGC 1 cut(s) 1367
MvaI CCWGG 3 cut(s) 878, 1132, 1401
MwoI GCNNNNNNNGC 8 cut(s) 20, 23, 122, 205, 795, 1067, 1582, 1591
NcoI CCATGG 1 cut(s) 1415
NlaIII CATG 7 cut(s) 247, 577, 782, 1369, 1419, 1502, 1598
NlaIV GGNNCC 3 cut(s) 1057, 1421, 1422
NmuCI GTSAC 3 cut(s) 248, 967, 1489
NsiI ATGCAT 1 cut(s) 1367
NspI RCATGY 1 cut(s) 1598
OliI CACNNNNGTG 1 cut(s) 512
PaeI GCATGC 1 cut(s) 1598
PaeR7I CTCGAG 1 cut(s) 630
PciSI GCTCTTC 1 cut(s) 722
PctI GAATGC 1 cut(s) 1367
PdmI GAANNNNTTC 1 cut(s) 1241
PfeI GAWTC 3 cut(s) 381, 775, 940
PkrI GCNGC 7 cut(s) 16, 19, 22, 25, 493, 595, 1600
PpuMI RGGWCCY 1 cut(s) 1420
PsiI TTATAA 1 cut(s) 1080
Psp5II RGGWCCY 1 cut(s) 1420
Psp6I CCWGG 3 cut(s) 876, 1130, 1399
PspGI CCWGG 3 cut(s) 876, 1130, 1399
PspN4I GGNNCC 3 cut(s) 1057, 1421, 1422
PspPI GGNCC 3 cut(s) 1397, 1420, 1445
PspPPI RGGWCCY 1 cut(s) 1420
PstI CTGCAG 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 681
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 1 cut(s) 1560
RsaNI GTAC 1 cut(s) 1559
RseI CAYNNNNRTG 2 cut(s) 512, 1088
SapI GCTCTTC 1 cut(s) 722
SaqAI TTAA 5 cut(s) 311, 711, 1065, 1430, 1542
SatI GCNGC 7 cut(s) 15, 18, 21, 24, 492, 594, 1599
Sau96I GGNCC 3 cut(s) 1397, 1420, 1445
ScrFI CCNGG 3 cut(s) 878, 1132, 1401
SduI GDGCHC 1 cut(s) 1058
SfaNI GCATC 6 cut(s) 186, 316, 694, 1114, 1219, 1242
SfcI CTRYAG 3 cut(s) 591, 868, 973
Sfr274I CTCGAG 1 cut(s) 630
SinI GGWCC 3 cut(s) 1397, 1420, 1445
SlaI CTCGAG 1 cut(s) 630
SmiMI CAYNNNNRTG 2 cut(s) 512, 1088
SmlI CTYRAG 2 cut(s) 111, 630
SmoI CTYRAG 2 cut(s) 111, 630
SpeI ACTAGT 1 cut(s) 694
SphI GCATGC 1 cut(s) 1598
SsiI CCGC 2 cut(s) 7, 1059
SspI AATATT 2 cut(s) 343, 1279
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 3 cut(s) 876, 1130, 1399
StyI CCWWGG 1 cut(s) 1415
TaaI ACNGT 6 cut(s) 677, 872, 967, 977, 998, 1397
TaiI ACGT 1 cut(s) 756
TaqI TCGA 2 cut(s) 631, 882
TatI WGTACW 1 cut(s) 1558
TfiI GAWTC 3 cut(s) 381, 775, 940
Tru1I TTAA 5 cut(s) 311, 711, 1065, 1430, 1542
Tru9I TTAA 5 cut(s) 311, 711, 1065, 1430, 1542
TscAI CASTG 4 cut(s) 126, 806, 1431, 1447
TseFI GTSAC 3 cut(s) 248, 967, 1489
TseI GCWGC 7 cut(s) 14, 17, 20, 23, 491, 593, 1598
Tsp45I GTSAC 3 cut(s) 248, 967, 1489
TspDTI ATGAA 7 cut(s) 74, 95, 457, 767, 1058, 1106, 1382
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 4 cut(s) 126, 806, 1431, 1447
VpaK11BI GGWCC 3 cut(s) 1397, 1420, 1445
XapI RAATTY 4 cut(s) 404, 413, 856, 1567
XceI RCATGY 1 cut(s) 1598
XhoI CTCGAG 1 cut(s) 630
XmiI GTMKAC 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 1241
XspI CTAG 1 cut(s) 695
ZraI GACGTC 1 cut(s) 754
Zsp2I ATGCAT 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.