Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001576

Physical Location & Seq

Genomic Coordinates Forward (+)

48196119 .. 48198149

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014152

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCTGAAGAGGCAAAGCATTTGTTGACCAAGATTGGTGTAGATGCATCCTTGAGATATGCCATCCATCTCATAACAGCTGCTGCATTGGCATGCCAAAAACGGAAGGGAAAGATTGTTGAGATGGAGGATATTAACCATGTTTATCTGATACTTGATGGAGTATCAGAATCAACAGCAAAGTGCAAACCGTTAATCACCACCACCACCTCCGATTCCCAAGCCCTCTCTTCGTCTCAAAGCCCTCTCCGCGCCGGTACAACCACCACCAGCACCTCCTCGGTCGGCGAAGCTTGGTGGACGGCTGCATCTCGATCTGCAATGCTTGGTGGACGGTTGCATCTCGATCTAGGGTTGTCTCGATCTGCTTCGTGTCCGGCCGCCGGTTCAATCACCACAACCACTTCTGACGGCAGCGTCTCGATCTCCGTCTCGATCTGCGAGAGTTTAGGGCTGCATCTCGATCTGCTTCTCGATCTCGTTCTCGATCTGCGAGGGTTGTCTCGATCTGCTTCGTGTCCGGCCGCCGGTTCAATCACCATAACCACTTCTGACGCCGAAGATCGAAGATTCTCAGAGCAAAAACAGAGACTGAAGATCTCCTCAGACCTCAGAGCTGTAAAAATGGTGACGTTGGCTTTGATCAACACCTATCCAGTTGGCGAGTTTATGGCAGTGGAAGAGATGGAAGCAGTAACAGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0031974 GO:0031981 GO:0032991 GO:0034708 GO:0035097 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044665 GO:0070013 GO:0070603 GO:0071339 GO:0097346 GO:1902494 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP49

Protein Analysis

236

Amino Acids

24.89

Weight (kDa)

5.74

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP49_C	PF17856	1 - 51	1.1e-15	TIP49 AAA-lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49830 AT5G67630
fragaria_vesca	FvH4_1g17590
malus_domestica	MD02G1184700.v1.1 MD08G1213300.v1.1
prunus_persica	Prupe.1G544700_v2.0.a1
pyrus_communis	pycom02g14980 pycom15g25960
rosa_chinensis	RchiOBHm_Chr2g0107901 RchiOBHm_Chr6g0265871 RchiOBHm_Chr6g0265881 RchiOBHm_Chr6g0265891 RchiOBHm_Chr6g0265911
rosa_laevigata	RLG00000014147 RLG00000014151 RLG00000014152 RLG00000017626 RLG00000030880
rosa_multiflora	Rmu_sc0000149.1_g000017 Rmu_sc0001484.1_g000033 Rmu_sc0006952.1_g000010 Rmu_sc0006952.1_g000012 Rmu_sc0006952.1_g000034 Rmu_sc0013320.1_g000004 Rmu_sc0013320.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135810 Rroxscaffold_7G00202230 Rroxscaffold_7G00202270 Rroxscaffold_7G00202280 Rroxscaffold_7G00202290
rosa_rugosa	Rorug02G0148600 Rorug02G0148600 Rorug06G0021100 Rorug06G0021100 Rorug06G0021300
rosa_samantha	Rh2AG197900 Rh2BG210800 Rh2CG202600 Rh2DG205600 Rh6BG142600 Rh6BG142700 Rh6CG139200 Rh6CG139300 Rh6DG126800 Rh6DG126900
rosa_wichuraiana	Rw0G009670 Rw0G009680 Rw2G015700 Rw6G012330 Rw6G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
AccII	CGCG	1 cut(s)	252
AciI	CCGC	3 cut(s)	250, 381, 525
AcoI	YGGCCR	2 cut(s)	378, 522
AcuI	CTGAAG	2 cut(s)	27, 614
AcyI	GRCGYC	1 cut(s)	555
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	383, 527
AgsI	TTSAA	2 cut(s)	390, 534
AluBI	AGCT	3 cut(s)	80, 293, 617
AluI	AGCT	3 cut(s)	80, 293, 617
Alw26I	GTCTC	6 cut(s)	240, 363, 424, 436, 507, 583
AlwNI	CAGNNNCTG	2 cut(s)	83, 592
AoxI	GGCC	2 cut(s)	378, 522
ApeKI	GCWGC	5 cut(s)	80, 83, 305, 414, 454
ArsI	GACNNNNNNTTYG	2 cut(s)	622, 654
AspLEI	GCGC	1 cut(s)	254
AsuHPI	GGTGA	4 cut(s)	190, 385, 529, 640
BbvI	GCAGC	5 cut(s)	67, 70, 292, 426, 441
BccI	CCATC	5 cut(s)	71, 75, 118, 152, 679
BceAI	ACGGC	2 cut(s)	318, 427
BclI	TGATCA	1 cut(s)	642
BcoDI	GTCTC	6 cut(s)	240, 363, 424, 436, 507, 583
BfaI	CTAG	1 cut(s)	350
BglII	AGATCT	1 cut(s)	597
BisI	GCNGC	7 cut(s)	81, 84, 306, 381, 415, 455, 525
BlsI	GCNGC	7 cut(s)	82, 85, 307, 382, 416, 456, 526
BmsI	GCATC	5 cut(s)	34, 56, 317, 349, 466
BpuEI	CTTGAG	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 527
Bse118I	RCCGGY	3 cut(s)	254, 383, 527
Bse1I	ACTGG	1 cut(s)	656
Bse3DI	GCAATG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	47, 63
BseLI	CCNNNNNNNGG	2 cut(s)	383, 527
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	3 cut(s)	588, 618, 625
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	2 cut(s)	268, 592
BseX3I	CGGCCG	2 cut(s)	378, 522
BseXI	GCAGC	5 cut(s)	67, 70, 292, 426, 441
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	3 cut(s)	285, 381, 525
BshFI	GGCC	2 cut(s)	380, 524
BsiEI	CGRYCG	3 cut(s)	285, 381, 525
BsiSI	CCGG	5 cut(s)	255, 377, 384, 521, 528
BslI	CCNNNNNNNGG	2 cut(s)	383, 527
BsmAI	GTCTC	6 cut(s)	240, 363, 424, 436, 507, 583
BsmBI	CGTCTC	3 cut(s)	240, 424, 436
BsnI	GGCC	2 cut(s)	380, 524
BspACI	CCGC	3 cut(s)	250, 381, 525
BspANI	GGCC	2 cut(s)	380, 524
BspCNI	CTCAG	3 cut(s)	587, 617, 624
BspFNI	CGCG	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	3 cut(s)	254, 383, 527
BsrI	ACTGG	1 cut(s)	656
BssAI	RCCGGY	3 cut(s)	254, 383, 527
BssECI	CCNNGG	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	192, 336
Bst6I	CTCTTC	3 cut(s)	3, 235, 675
BstACI	GRCGYC	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	574, 604, 611
BstF5I	GGATG	2 cut(s)	47, 63
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	254
BstMAI	GTCTC	6 cut(s)	240, 363, 424, 436, 507, 583
BstMCI	CGRYCG	3 cut(s)	285, 381, 525
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 249
BstNSI	RCATGY	1 cut(s)	96
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	5 cut(s)	67, 70, 292, 426, 441
BstX2I	RGATCY	1 cut(s)	597
BstYI	RGATCY	1 cut(s)	597
BstZI	CGGCCG	2 cut(s)	378, 522
BsuRI	GGCC	2 cut(s)	380, 524
BtsCI	GGATG	2 cut(s)	47, 63
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	1 cut(s)	681
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	2 cut(s)	83, 592
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	3 cut(s)	254, 383, 527
CseI	GACGC	2 cut(s)	406, 563
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	2 cut(s)	93, 140
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	3 cut(s)	574, 604, 611
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	2 cut(s)	378, 522
EagI	CGGCCG	2 cut(s)	378, 522
Eam1104I	CTCTTC	3 cut(s)	3, 235, 675
EarI	CTCTTC	3 cut(s)	3, 235, 675
EclXI	CGGCCG	2 cut(s)	378, 522
Eco52I	CGGCCG	2 cut(s)	378, 522
Eco57I	CTGAAG	2 cut(s)	27, 614
EcoT22I	ATGCAT	1 cut(s)	49
Esp3I	CGTCTC	3 cut(s)	240, 424, 436
FaeI	CATG	2 cut(s)	96, 143
FaiI	YATR	6 cut(s)	60, 74, 94, 141, 542, 671
FatI	CATG	2 cut(s)	92, 139
FbaI	TGATCA	1 cut(s)	642
Fnu4HI	GCNGC	7 cut(s)	81, 84, 306, 381, 415, 455, 525
FokI	GGATG	2 cut(s)	34, 50
Fsp4HI	GCNGC	7 cut(s)	81, 84, 306, 381, 415, 455, 525
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	7 cut(s)	81, 84, 306, 381, 415, 455, 525
HaeIII	GGCC	2 cut(s)	380, 524
HapII	CCGG	5 cut(s)	255, 377, 384, 521, 528
HgaI	GACGC	2 cut(s)	406, 563
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	2 cut(s)	96, 143
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	3 cut(s)	170, 215, 570
HpaII	CCGG	5 cut(s)	255, 377, 384, 521, 528
HphI	GGTGA	4 cut(s)	190, 385, 529, 640
Hpy166II	GTNNAC	3 cut(s)	27, 300, 332
Hpy188I	TCNGA	9 cut(s)	7, 150, 169, 214, 409, 553, 577, 607, 614
Hpy188III	TCNNGA	9 cut(s)	312, 344, 360, 421, 433, 461, 473, 485, 504
Hpy8I	GTNNAC	3 cut(s)	27, 300, 332
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	192, 336
HpyCH4IV	ACGT	1 cut(s)	632
HpyCH4V	TGCA	7 cut(s)	47, 86, 186, 308, 320, 340, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 249
HpyF3I	CTNAG	3 cut(s)	574, 604, 611
HpySE526I	ACGT	1 cut(s)	632
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	96, 143
HspAI	GCGC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	642
LpnPI	CCDG	7 cut(s)	268, 283, 390, 397, 534, 541, 669
Lsp1109I	GCAGC	5 cut(s)	67, 70, 292, 426, 441
LweI	GCATC	5 cut(s)	34, 56, 317, 349, 466
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	632
MaeIII	GTNAC	2 cut(s)	628, 694
MboII	GAAGA	6 cut(s)	20, 222, 572, 579, 607, 692
MflI	RGATCY	1 cut(s)	597
Mph1103I	ATGCAT	1 cut(s)	49
MseI	TTAA	2 cut(s)	135, 194
MslI	CAYNNNNRTG	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	5 cut(s)	255, 377, 384, 521, 528
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	89, 249
NlaIII	CATG	2 cut(s)	96, 143
NmuCI	GTSAC	1 cut(s)	628
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	96
PaeI	GCATGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	170, 215, 570
PkrI	GCNGC	7 cut(s)	82, 85, 307, 382, 416, 456, 526
PstNI	CAGNNNCTG	2 cut(s)	83, 592
PsuI	RGATCY	1 cut(s)	597
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	135, 194
SatI	GCNGC	7 cut(s)	81, 84, 306, 381, 415, 455, 525
SetI	ASST	8 cut(s)	82, 212, 278, 295, 612, 619, 635, 653
SfaNI	GCATC	5 cut(s)	34, 56, 317, 349, 466
SmiMI	CAYNNNNRTG	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SphI	GCATGC	1 cut(s)	96
SsiI	CCGC	3 cut(s)	250, 381, 525
SspMI	CTAG	1 cut(s)	350
TaaI	ACNGT	2 cut(s)	192, 336
TaiI	ACGT	1 cut(s)	635
TaqII	GACCGA	1 cut(s)	271
TauI	GCSGC	2 cut(s)	383, 527
TfiI	GAWTC	3 cut(s)	170, 215, 570
Tru1I	TTAA	2 cut(s)	135, 194
Tru9I	TTAA	2 cut(s)	135, 194
TscAI	CASTG	1 cut(s)	681
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	5 cut(s)	80, 83, 305, 414, 454
Tsp45I	GTSAC	1 cut(s)	628
TspGWI	ACGGA	2 cut(s)	118, 418
TspRI	CASTG	1 cut(s)	681
XceI	RCATGY	1 cut(s)	96
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.