Rmu_sc0000468.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000468.1
Physical Location & Seq
Reverse (-)
4752 .. 5680
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000468.1_g000002.1.cds

Sequence Viewer

Length: 276 bp
atgtttctcaggaagttcactatccttattctcctgatttctgcagcatcacttttatcaacctcttttgcagcaggtagacaacccaagtttgtcaataagttggctaaagaagcagtggatgaaactccagaggaagtattagggaagccattgagccacaaggaagctgccagaatccatgaaaggcttctcagggctaacacaaaagattatggacgatacgatccagcacctgctcttgttaagcctcctttcaagctcattccaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.17

Weight (kDa)

9.91

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013349)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
Acc36I ACCTGC 2 cut(s) 65, 244
AccI GTMKAC 1 cut(s) 79
AclWI GGATC 1 cut(s) 221
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 2 cut(s) 170, 262
AluI AGCT 2 cut(s) 170, 262
AlwI GGATC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 236
ApeKI GCWGC 3 cut(s) 44, 71, 170
Asp700I GAANNNNTTC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 56, 83, 157
BfmI CTRYAG 1 cut(s) 42
BfuAI ACCTGC 2 cut(s) 65, 244
BisI GCNGC 3 cut(s) 45, 72, 171
BlsI GCNGC 3 cut(s) 46, 73, 172
BmsI GCATC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 114
BseGI GGATG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 22, 208
BseXI GCAGC 3 cut(s) 56, 83, 157
Bsp143I GATC 1 cut(s) 226
BspCNI CTCAG 2 cut(s) 21, 207
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 2 cut(s) 65, 244
BspPI GGATC 1 cut(s) 221
BssMI GATC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 8, 194
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 56, 83, 157
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 2 cut(s) 65, 244
CaiI CAGNNNCTG 1 cut(s) 236
CviAII CATG 1 cut(s) 182
CviJI RGCY 8 cut(s) 107, 151, 159, 170, 190, 200, 250, 262
CviKI_1 RGCY 8 cut(s) 107, 151, 159, 170, 190, 200, 250, 262
DdeI CTNAG 2 cut(s) 8, 194
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
FaeI CATG 1 cut(s) 185
FaiI YATR 2 cut(s) 183, 216
FatI CATG 1 cut(s) 181
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 3 cut(s) 45, 72, 171
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 45, 72, 171
GluI GCNGC 3 cut(s) 45, 72, 171
GsuI CTGGAG 1 cut(s) 114
Hin1II CATG 1 cut(s) 185
HinfI GANTC 1 cut(s) 177
Hpy166II GTNNAC 2 cut(s) 18, 80
Hpy188III TCNNGA 3 cut(s) 10, 34, 131
Hpy8I GTNNAC 2 cut(s) 18, 80
HpyCH4V TGCA 2 cut(s) 44, 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 8, 194
Hsp92II CATG 1 cut(s) 185
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 7 cut(s) 47, 60, 144, 181, 187, 243, 249
Lsp1109I GCAGC 3 cut(s) 56, 83, 157
LweI GCATC 1 cut(s) 56
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MnlI CCTC 3 cut(s) 73, 127, 261
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 185
PaqCI CACCTGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 3 cut(s) 46, 73, 172
PstI CTGCAG 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 3 cut(s) 45, 72, 171
Sau3AI GATC 1 cut(s) 226
SetI ASST 5 cut(s) 65, 79, 172, 238, 264
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 42
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 123
TseI GCWGC 3 cut(s) 44, 71, 170
TspDTI ATGAA 2 cut(s) 138, 198
TspRI CASTG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.