Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012292

Physical Location & Seq

Genomic Coordinates Forward (+)

9045552 .. 9049124

Gene Structure 3573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGACCTTGACGACCTCGACGGGCCGAGCAAGCCTGCTCGGGTCTCCAGGTTCATGCCCCGCTCCAAAAATGCCCCACCGAAACCGAAACCCGAACCAAATGTCCCAAAGTTTGAACTAGAACCACCGCAGCTGCTCAAGCCCAAGCCGGAAGCACTTGATGGTGATGATTCGAATGGCACTGTGAAAATGGAGACTACTGAACAACTGAAGGAGGATGATGATCCTATGGACGAAGAGGATGCTGAAGATACTGTCGTTCGTGAAATTGATGTCTTCTTTAGCCCTAATGTCGATTCCAACACTCAGTTATACATTTTGCAATATCCTCTAAGGCCTCGGTGGCGGCGCTATGAGCTGGAGAATCGGTGCGAGGAGATAAGAGTGAAGCCTGACACTGCTCAAGTGGAGACTTTGGCTACAGAATGGGATTCCTGTAGTTCAACTGGCTACGTTGTTGGAGTTTTGATGGGCAACAAGTTACACTTGAATCATGTTCATGCAGTTGTGCAGCTCCAACCATCACTGGACCATTTAAACCCCGGTGGCTCAAAAAGGAAGGGCAAGGCCACTGGGGATGCAGATGTTCCAATTAAAAGAGAAAATTTTACTGAGGAAAAATCTTTGGCTCCATCAAAGAAACATAACAAGCATGTAAAGTCCCCAACTGAAGAGGAAGAGTGTTGGGTTCCACTTCACTACCATGGTTCTGAATGTGATTTTTCGGCTAGATATTTAAAAAGAATGGTGGTGCAAGACAGTTCTCCTATAGAATTTACAATGATTCCGGCTTTACTGAACCTACCTTTGGAGGAGCGCATCCAGAAGTTGCTTGTTGAGGAACCTGTAGCTCGCCGATTTAGTGATCTGAAGAAGTACTATGCTCGGAACCAGGGAAAAGAACTTTTGGATGTCCTTCAAAAGAATGGTCTATTACTGCGTGATCTTTGGGTTCCAAAAACTGCATTGCTATATCGCAAGAAGGAAAGCTCTTCTAGAAAGAAAGATGATGATAATCTGCGTACGACTAGAAATTACATCCTGAATTCATTTCGGAAGAACCCTGTAATTAGTAATGCAGAACTAAATGTCTACTCGTCACTGAAGCCTCATTTTGACAAAACCTTGAAATTCTTAGTTGTCTACAGACCTTCAACTCGAGATTGGAAATTGAAAGAGCATTCAGATGTATCATTTGCAGAACTCTATCCAGAAATTTCTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko03020 ko04623 ko05169 map00230 map00240 map03020 map04623 map05169

Pfam Domains

Protein Families

Sin_N

Protein Analysis

410

Amino Acids

47.15

Weight (kDa)

6.13

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPC5	PF04801	83 - 137	5.6e-16	RPC5 protein
RPC5	PF04801	147 - 261	8e-17	RPC5 protein
RPC5	PF04801	265 - 408	5.3e-22	RPC5 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49530
fragaria_vesca	FvH4_1g13700 FvH4_1g13700 FvH4_2g10200
malus_domestica	MD02G1151400.v1.1 MD15G1266000.v1.1
prunus_persica	Prupe.7G151600_v2.0.a1 Prupe.7G151600_v2.0.a1
pyrus_communis	pycom02g11880
rosa_chinensis	RchiOBHm_Chr2g0102021
rosa_laevigata	RLG00000017127
rosa_multiflora	Rmu_sc0000157.1_g000006
rosa_roxburghii	Rroxscaffold_2G00140820
rosa_rugosa	Rorug02G0104100.1
rosa_samantha	Rh2AG152100 Rh2BG157500 Rh2CG157500 Rh2DG157600
rosa_wichuraiana	Rw2G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	63
AccI	GTMKAC	2 cut(s)	1092, 1143
AciI	CCGC	3 cut(s)	61, 128, 346
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	5 cut(s)	604, 773, 1045, 1130, 1215
AcuI	CTGAAG	5 cut(s)	230, 267, 690, 890, 1124
AfaI	GTAC	2 cut(s)	878, 1024
AfiI	CCNNNNNNNGG	1 cut(s)	808
AgsI	TTSAA	7 cut(s)	116, 444, 490, 920, 1129, 1155, 1174
AjnI	CCWGG	2 cut(s)	47, 891
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AloI	GAACNNNNNNTCC	2 cut(s)	87, 119
AluBI	AGCT	6 cut(s)	133, 358, 514, 851, 990, 1227
AluI	AGCT	6 cut(s)	133, 358, 514, 851, 990, 1227
Alw26I	GTCTC	3 cut(s)	49, 188, 404
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	2 cut(s)	39, 1158
AoxI	GGCC	3 cut(s)	23, 335, 567
ApeKI	GCWGC	3 cut(s)	130, 133, 511
ApoI	RAATTY	5 cut(s)	604, 773, 1045, 1130, 1215
ArsI	GACNNNNNNTTYG	4 cut(s)	87, 119, 913, 945
AspLEI	GCGC	2 cut(s)	351, 819
AspS9I	GGNCC	3 cut(s)	4, 23, 529
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	173
AvaI	CYCGRG	2 cut(s)	39, 1158
AvaII	GGWCC	2 cut(s)	4, 529
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BbsI	GAAGAC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	120, 142, 523
BccI	CCATC	4 cut(s)	155, 463, 529, 640
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	2 cut(s)	49, 893
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	3 cut(s)	49, 188, 404
BfaI	CTAG	5 cut(s)	119, 729, 996, 1029, 1228
BfmI	CTRYAG	5 cut(s)	420, 436, 768, 846, 1144
BfoI	RGCGCY	1 cut(s)	352
BglI	GCCNNNNNGGC	1 cut(s)	343
BisI	GCNGC	4 cut(s)	131, 134, 347, 512
BlsI	GCNGC	4 cut(s)	132, 135, 348, 513
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	3 cut(s)	49, 543, 893
Bme18I	GGWCC	2 cut(s)	4, 529
BmeT110I	CYCGRG	2 cut(s)	39, 1158
BmgT120I	GGNCC	3 cut(s)	4, 23, 529
BmiI	GGNNCC	5 cut(s)	630, 690, 843, 890, 954
BmrFI	CCNGG	3 cut(s)	49, 543, 893
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	3 cut(s)	232, 568, 828
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	268
BpmI	CTGGAG	2 cut(s)	31, 380
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	122, 387
BpuMI	CCSGG	1 cut(s)	543
BsaBI	GATNNNNATC	2 cut(s)	222, 1014
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	4 cut(s)	338, 541, 703, 892
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	808
Bse1I	ACTGG	3 cut(s)	451, 531, 577
Bse3DI	GCAATG	1 cut(s)	965
Bse8I	GATNNNNATC	2 cut(s)	222, 1014
BseBI	CCWGG	2 cut(s)	49, 893
BseDI	CCNNGG	4 cut(s)	338, 541, 703, 892
BseGI	GGATG	6 cut(s)	223, 247, 583, 819, 916, 1038
BseJI	GATNNNNATC	2 cut(s)	222, 1014
BseLI	CCNNNNNNNGG	1 cut(s)	808
BseMI	GCAATG	1 cut(s)	965
BseMII	CTCAG	2 cut(s)	320, 603
BseNI	ACTGG	3 cut(s)	451, 531, 577
BseRI	GAGGAG	2 cut(s)	389, 827
BseXI	GCAGC	3 cut(s)	120, 142, 523
BsgI	GTGCAG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	25, 337, 569
BsiHKCI	CYCGRG	2 cut(s)	39, 1158
BsiSI	CCGG	3 cut(s)	149, 543, 788
BsiWI	CGTACG	1 cut(s)	1022
BslFI	GGGAC	2 cut(s)	89, 646
BslI	CCNNNNNNNGG	1 cut(s)	808
BsmAI	GTCTC	3 cut(s)	49, 188, 404
BsmFI	GGGAC	2 cut(s)	89, 646
BsmI	GAATGC	1 cut(s)	1180
BsnI	GGCC	3 cut(s)	25, 337, 569
Bso31I	GGTCTC	1 cut(s)	49
BsoBI	CYCGRG	2 cut(s)	39, 1158
Bsp119I	TTCGAA	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	223, 865, 943
Bsp19I	CCATGG	1 cut(s)	703
BspACI	CCGC	3 cut(s)	61, 128, 346
BspANI	GGCC	3 cut(s)	25, 337, 569
BspCNI	CTCAG	2 cut(s)	319, 604
BspLI	GGNNCC	5 cut(s)	630, 690, 843, 890, 954
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	997
BspT104I	TTCGAA	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	49
BsrBI	CCGCTC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	965
BsrI	ACTGG	3 cut(s)	451, 531, 577
BssECI	CCNNGG	4 cut(s)	338, 541, 703, 892
BssMI	GATC	3 cut(s)	223, 865, 943
BssT1I	CCWWGG	1 cut(s)	703
Bst2UI	CCWGG	2 cut(s)	49, 893
Bst4CI	ACNGT	3 cut(s)	184, 256, 761
Bst6I	CTCTTC	4 cut(s)	231, 666, 672, 997
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	32, 36, 853
BstDEI	CTNAG	4 cut(s)	306, 332, 612, 1135
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	6 cut(s)	223, 247, 583, 819, 916, 1038
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	2 cut(s)	351, 819
BstKTI	GATC	3 cut(s)	226, 868, 946
BstMAI	GTCTC	3 cut(s)	49, 188, 404
BstMBI	GATC	3 cut(s)	223, 865, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 139, 343, 355
BstNI	CCWGG	2 cut(s)	49, 893
BstNSI	RCATGY	1 cut(s)	656
BstSCI	CCNGG	3 cut(s)	47, 541, 891
BstSFI	CTRYAG	5 cut(s)	420, 436, 768, 846, 1144
BstV1I	GCAGC	3 cut(s)	120, 142, 523
BstV2I	GAAGAC	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	25, 337, 569
BtgI	CCRYGG	1 cut(s)	703
BtsCI	GGATG	6 cut(s)	223, 247, 583, 819, 916, 1038
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	5 cut(s)	180, 396, 524, 570, 1100
Cac8I	GCNNGC	3 cut(s)	32, 36, 853
CfoI	GCGC	2 cut(s)	351, 819
Cfr13I	GGNCC	3 cut(s)	4, 23, 529
Csp6I	GTAC	2 cut(s)	877, 1023
CviAII	CATG	5 cut(s)	55, 494, 500, 653, 704
CviQI	GTAC	2 cut(s)	877, 1023
DdeI	CTNAG	4 cut(s)	306, 332, 612, 1135
DpnI	GATC	3 cut(s)	225, 867, 945
DpnII	GATC	3 cut(s)	223, 865, 943
DraI	TTTAAA	2 cut(s)	537, 738
Eam1104I	CTCTTC	4 cut(s)	231, 666, 672, 997
EarI	CTCTTC	4 cut(s)	231, 666, 672, 997
Eco130I	CCWWGG	1 cut(s)	703
Eco147I	AGGCCT	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	4, 529
Eco57I	CTGAAG	5 cut(s)	230, 267, 690, 890, 1124
Eco88I	CYCGRG	2 cut(s)	39, 1158
EcoRI	GAATTC	1 cut(s)	1045
EcoRII	CCWGG	2 cut(s)	47, 891
EcoT14I	CCWWGG	1 cut(s)	703
ErhI	CCWWGG	1 cut(s)	703
FaeI	CATG	5 cut(s)	58, 497, 503, 656, 707
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	89, 646
FatI	CATG	5 cut(s)	54, 493, 499, 652, 703
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	2 cut(s)	1092, 1143
Fnu4HI	GCNGC	4 cut(s)	131, 134, 347, 512
FokI	GGATG	6 cut(s)	230, 254, 590, 806, 923, 1025
Fsp4HI	GCNGC	4 cut(s)	131, 134, 347, 512
FspBI	CTAG	5 cut(s)	119, 729, 996, 1029, 1228
GlaI	GCGC	2 cut(s)	350, 818
GluI	GCNGC	4 cut(s)	131, 134, 347, 512
GsuI	CTGGAG	2 cut(s)	31, 380
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	25, 337, 569
HapII	CCGG	3 cut(s)	149, 543, 788
HhaI	GCGC	2 cut(s)	351, 819
Hin1II	CATG	5 cut(s)	58, 497, 503, 656, 707
Hin6I	GCGC	2 cut(s)	349, 817
HinP1I	GCGC	2 cut(s)	349, 817
HinfI	GANTC	6 cut(s)	170, 296, 364, 431, 490, 784
HpaII	CCGG	3 cut(s)	149, 543, 788
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	1093, 1144
Hpy188I	TCNGA	6 cut(s)	712, 870, 888, 1056, 1186, 1222
Hpy188III	TCNNGA	6 cut(s)	263, 823, 996, 1042, 1160, 1211
Hpy8I	GTNNAC	2 cut(s)	1093, 1144
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	5 cut(s)	205, 553, 926, 976, 1161
HpyCH4III	ACNGT	3 cut(s)	184, 256, 761
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	8 cut(s)	322, 503, 511, 581, 754, 965, 1079, 1199
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 139, 343, 355
HpyF3I	CTNAG	4 cut(s)	306, 332, 612, 1135
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	5 cut(s)	58, 497, 503, 656, 707
HspAI	GCGC	2 cut(s)	349, 817
Kzo9I	GATC	3 cut(s)	223, 865, 943
LguI	GCTCTTC	1 cut(s)	997
LmnI	GCTCC	4 cut(s)	68, 519, 634, 814
Lsp1109I	GCAGC	3 cut(s)	120, 142, 523
LweI	GCATC	3 cut(s)	232, 568, 828
MaeI	CTAG	5 cut(s)	119, 729, 996, 1029, 1228
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	480, 1098
MalI	GATC	3 cut(s)	225, 867, 945
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	3 cut(s)	223, 865, 943
MboII	GAAGA	8 cut(s)	248, 260, 268, 683, 689, 883, 984, 1069
MmeI	TCCRAC	3 cut(s)	324, 439, 541
MseI	TTAA	3 cut(s)	536, 594, 737
MslI	CAYNNNNRTG	3 cut(s)	498, 702, 1185
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	3 cut(s)	149, 543, 788
MspR9I	CCNGG	3 cut(s)	49, 543, 893
Mva1269I	GAATGC	1 cut(s)	1180
MvaI	CCWGG	2 cut(s)	49, 893
MwoI	GCNNNNNNNGC	4 cut(s)	31, 139, 343, 355
NciI	CCSGG	1 cut(s)	543
NcoI	CCATGG	1 cut(s)	703
NdeII	GATC	3 cut(s)	223, 865, 943
NlaIII	CATG	5 cut(s)	58, 497, 503, 656, 707
NlaIV	GGNNCC	5 cut(s)	630, 690, 843, 890, 954
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	1098
NspI	RCATGY	1 cut(s)	656
NspV	TTCGAA	1 cut(s)	173
PaeR7I	CTCGAG	1 cut(s)	1158
PceI	AGGCCT	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	997
PctI	GAATGC	1 cut(s)	1180
PfeI	GAWTC	6 cut(s)	170, 296, 364, 431, 490, 784
Pfl23II	CGTACG	1 cut(s)	1022
PkrI	GCNGC	4 cut(s)	132, 135, 348, 513
Psp6I	CCWGG	2 cut(s)	47, 891
PspGI	CCWGG	2 cut(s)	47, 891
PspLI	CGTACG	1 cut(s)	1022
PspN4I	GGNNCC	5 cut(s)	630, 690, 843, 890, 954
PspPI	GGNCC	3 cut(s)	4, 23, 529
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	2 cut(s)	878, 1024
RsaNI	GTAC	2 cut(s)	877, 1023
RseI	CAYNNNNRTG	3 cut(s)	498, 702, 1185
SapI	GCTCTTC	1 cut(s)	997
SaqAI	TTAA	3 cut(s)	536, 594, 737
SatI	GCNGC	4 cut(s)	131, 134, 347, 512
Sau3AI	GATC	3 cut(s)	223, 865, 943
Sau96I	GGNCC	3 cut(s)	4, 23, 529
ScaI	AGTACT	1 cut(s)	878
ScrFI	CCNGG	3 cut(s)	49, 543, 893
SfaNI	GCATC	3 cut(s)	232, 568, 828
SfcI	CTRYAG	5 cut(s)	420, 436, 768, 846, 1144
Sfr274I	CTCGAG	1 cut(s)	1158
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	2 cut(s)	4, 529
SlaI	CTCGAG	1 cut(s)	1158
SmiMI	CAYNNNNRTG	3 cut(s)	498, 702, 1185
SmlI	CTYRAG	3 cut(s)	137, 402, 1158
SmoI	CTYRAG	3 cut(s)	137, 402, 1158
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	3 cut(s)	61, 128, 346
SspMI	CTAG	5 cut(s)	119, 729, 996, 1029, 1228
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	3 cut(s)	47, 541, 891
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	3 cut(s)	184, 256, 761
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	4 cut(s)	18, 173, 294, 1159
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	6 cut(s)	170, 296, 364, 431, 490, 784
Tru1I	TTAA	3 cut(s)	536, 594, 737
Tru9I	TTAA	3 cut(s)	536, 594, 737
TscAI	CASTG	5 cut(s)	187, 403, 531, 577, 1107
TseFI	GTSAC	1 cut(s)	1098
TseI	GCWGC	3 cut(s)	130, 133, 511
Tsp45I	GTSAC	1 cut(s)	1098
TspDTI	ATGAA	3 cut(s)	43, 488, 1038
TspRI	CASTG	5 cut(s)	187, 403, 531, 577, 1107
VpaK11BI	GGWCC	2 cut(s)	4, 529
XapI	RAATTY	5 cut(s)	604, 773, 1045, 1130, 1215
XbaI	TCTAGA	1 cut(s)	995
XceI	RCATGY	1 cut(s)	656
XhoI	CTCGAG	1 cut(s)	1158
XmiI	GTMKAC	2 cut(s)	1092, 1143
XspI	CTAG	5 cut(s)	119, 729, 996, 1029, 1228
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.