Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012292

Physical Location & Seq

Genomic Coordinates Forward (+)

79148829 .. 79155358

Gene Structure 6530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGGACTTAGACGACCTCGAAGGGCCGAGCAAGCCTGCTCGGGTCTCCAGGTTCATGCCCCGGTCCAAAAACGCCCCACCGAAACCGAAACCGGAACCCGCCGTCAAAAAGGAACCTGCAAAACCGGTCCCAAACTCCGAGCCGGAACCGCCGCAGCTGCTCAAGCCCAAGCCGGAAGCACTCGATGACGTGGCGGTTCTCGCAGTGGCGGAGAAGAAAGAAGAGAAGCAAGAAGAAGGCGCCAATGGAGATGATTCAAATGGCGCCGTGAAAATGGAGACCGTTGGAGAAGCGAAGGAGGACGACGATCCTATGGAAGAAGACGACGCTGAAGACACCGTCGTTCGTGAACTTGACGTCTTCTTTAATCCTAGAGTCGATTCCAACACTCAGTTGTACGTTTTGCAATATCCTCTGAGGCCTCGGTGGCGGCCGTACGAGTTGGAGAATCGGTGCGAGGAGATAAGAGTGAAACCTGCCACTGCTGAAGTGGAGGTGGATTTGTCTCTAGATGTTTACTCGAAGAATTGTGATCAAGAGTTTGCTGACAGGCTCAAAATGACAAAGCAGACTTTGGCTACAGAATGGGATCCCTGCCGTTCAACTGGCTATGCCGTTGGGGTTTTGATGGGCAACAAGTTACACTTGAATCCTGTTCATGCAGTTGTGCAGCTCCGACCATCACTGGAGCATTTAAAGCCTGGTGGCTCAAAAAGGAAGGGCAAGGCCACAGGGGATGCAGAAGTTACAGTTAAAAGAGAGATTTATAGTGAGGAAAGATCTTTGGCTCCATCAAAGAAACAGAACAAGCGTGTGGAGTCCTCAACGGAAGATGAAGAGGGTTCAGAAAGTGATTTTTCAGCTAGATATTTAAAAAGAATGGTGGTACAAGAAAGTTCTCCTATAGAATTTACAATGACTCCGTATGACTATGTTAACTCCTTGTGTCCTCGAACGTGCAAAGGCTCTTCCAAAAGGGCTCTGCTAAACCTGCCTCTGGAGGAGCGTATCCAGAAGTTGCTTGTTGAGGAACCTATAGCTCGCCGGTTCAGTGATCTTAAGAAGTACTATGCTCCTCGTAACCAGGAAAAAGAACTTTTGGATGTCCTTCAAAAGCATGGTCTATTGCTGCGTGATCTCTGGGTTCCAAAAACTGCATTGCTATATCCCAAGAAAGAGGGCTCGTCTAGAAAGAAAGAGGATGACAATCTGCGTACAGCTAGAAATTACATTCTAAATTCATTCTGGAAGAACCCTGTAATTGGTTATTCAGAACTAAACGTCTACCCACCCCTAAAGCCTCATTTTGACGAAACCTTGAAAGTCTTAGCTGTCTACAGACCTTCGGCTCGAGATTGGAAATTTAAAGAGCAATCAGACGTGTCATTTGCAGAACTCTATCCAGAGATTTCTGAAAGCCAGGAACAGATCTGGGAAAGGATGGATAAACAATTGGTGGAAGCCCTTAAGCCTCACCGTGATATGAAGAATGCTAGCATGAATAGTAAGATTGGGAAATCACCAAATTCTGATAAAGGTCCTAGTAAAAGTGCAAGTGGAGTTCCCAGTGGAGGAGTGAGAACCATGTCAGATGAAACCCGAGCAGCTCTACCTGATGCCATCAAGGAAGTTCTTCAGAAACACAAGCCAGGCTTTCAGCTGATATGTGATGGATTACGTCATTTGACAGTCGACAGAATGCAGCATCCAAAAGTTGATCCTAAGAGTAAAAAGTTAACAGCTGCAAGGAATGGCCTTGAGGCTCCTCCAGAAGAGCTGCAGAAAGTCATAACACAAGTTGCAGTGAACATTCATGGTTCATATGTCTTGATATCATCGCCAGACCACCCAGAGCATGACCAGTTAAGGGATGTTGTAATTAAACTTCTACAAGGTAAGAATAAAGGGCCACTTAAAAAGCTGGATGTTACTATAGCTGCTAAGGAGGAACTTGGGAGGGAAATCAGTAATAATGAATATAGCAAGGTCATGACTGAACTTTGTGTGTCTAAAGGTTCTCAATGGTACCTGAAAAGTGGGGATGGCGGGCCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko03020 ko04623 ko05169 map00230 map00240 map03020 map04623 map05169

Pfam Domains

Protein Families

Sin_N

Protein Analysis

685

Amino Acids

77.36

Weight (kDa)

6.9

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPC5	PF04801	111 - 486	6.2e-79	RPC5 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49530
fragaria_vesca	FvH4_1g13700 FvH4_1g13700 FvH4_2g10200
malus_domestica	MD02G1151400.v1.1 MD15G1266000.v1.1
prunus_persica	Prupe.7G151600_v2.0.a1 Prupe.7G151600_v2.0.a1
pyrus_communis	pycom02g11880
rosa_chinensis	RchiOBHm_Chr2g0102021
rosa_laevigata	RLG00000017127
rosa_multiflora	Rmu_sc0000157.1_g000006
rosa_roxburghii	Rroxscaffold_2G00140820
rosa_rugosa	Rorug02G0104100.1
rosa_samantha	Rh2AG152100 Rh2BG157500 Rh2CG157500 Rh2DG157600
rosa_wichuraiana	Rw2G011880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	360
Acc36I	ACCTGC	3 cut(s)	124, 484, 999
Acc65I	GGTACC	1 cut(s)	2025
AccB1I	GGYRCC	3 cut(s)	239, 263, 2025
AccI	GTMKAC	3 cut(s)	1284, 1335, 1692
AciI	CCGC	7 cut(s)	99, 149, 152, 194, 209, 430, 2046
AclWI	GGATC	4 cut(s)	302, 584, 597, 1712
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	4 cut(s)	908, 1237, 1361, 1525
AcuI	CTGAAG	3 cut(s)	351, 507, 1619
AcyI	GRCGYC	3 cut(s)	240, 264, 357
AfaI	GTAC	6 cut(s)	398, 437, 888, 1067, 1216, 2027
AfiI	CCNNNNNNNGG	4 cut(s)	997, 1262, 1571, 1867
AflII	CTTAAG	2 cut(s)	1058, 1466
AflIII	ACRYGT	1 cut(s)	1380
AgeI	ACCGGT	1 cut(s)	124
AgsI	TTSAA	5 cut(s)	258, 603, 649, 1112, 1321
AjiI	CACGTC	2 cut(s)	190, 1381
AjnI	CCWGG	5 cut(s)	47, 700, 1083, 1419, 1648
Alw26I	GTCTC	3 cut(s)	49, 272, 510
AlwI	GGATC	4 cut(s)	302, 584, 597, 1712
Ama87I	CYCGRG	3 cut(s)	39, 1350, 1599
AoxI	GGCC	7 cut(s)	23, 419, 431, 726, 1753, 1907, 2048
ApeKI	GCWGC	9 cut(s)	154, 157, 670, 1129, 1604, 1702, 1742, 1777, 1937
ApoI	RAATTY	4 cut(s)	908, 1237, 1361, 1525
ArsI	GACNNNNNNTTYG	4 cut(s)	1105, 1137, 1370, 1402
AsiGI	ACCGGT	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	1632
Asp718I	GGTACC	1 cut(s)	2025
AspLEI	GCGC	2 cut(s)	242, 266
AspS9I	GGNCC	6 cut(s)	23, 63, 127, 1538, 1907, 2048
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	1466, 1512
AsuNHI	GCTAGC	1 cut(s)	1493
AvaI	CYCGRG	3 cut(s)	39, 1350, 1599
AvaII	GGWCC	3 cut(s)	63, 127, 1538
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	3 cut(s)	239, 263, 2025
BanII	GRGCYC	2 cut(s)	982, 1184
BarI	GAAGNNNNNNTAC	2 cut(s)	1869, 1901
BbsI	GAAGAC	3 cut(s)	327, 339, 352
BbvI	GCAGC	9 cut(s)	144, 166, 682, 1116, 1616, 1714, 1729, 1764, 1924
BccI	CCATC	7 cut(s)	622, 688, 799, 1435, 1628, 1664, 2036
BceAI	ACGGC	5 cut(s)	86, 251, 418, 582, 599
BciT130I	CCWGG	5 cut(s)	49, 702, 1085, 1421, 1650
BciVI	GTATCC	1 cut(s)	1019
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	3 cut(s)	49, 272, 510
BfaI	CTAG	7 cut(s)	372, 509, 864, 1188, 1221, 1494, 1542
BfmI	CTRYAG	6 cut(s)	579, 903, 1035, 1336, 1778, 1932
BfoI	RGCGCY	2 cut(s)	243, 267
BfrI	CTTAAG	2 cut(s)	1058, 1466
BfuAI	ACCTGC	3 cut(s)	124, 484, 999
BfuI	GTATCC	1 cut(s)	1019
BglI	GCCNNNNNGGC	1 cut(s)	427
BglII	AGATCT	2 cut(s)	779, 1428
BmcAI	AGTACT	1 cut(s)	1067
Bme1390I	CCNGG	6 cut(s)	49, 61, 702, 1085, 1421, 1650
Bme18I	GGWCC	3 cut(s)	63, 127, 1538
BmeT110I	CYCGRG	3 cut(s)	39, 1350, 1599
BmgBI	CACGTC	2 cut(s)	190, 1381
BmgT120I	GGNCC	6 cut(s)	23, 63, 127, 1538, 1907, 2048
BmrFI	CCNGG	6 cut(s)	49, 61, 702, 1085, 1421, 1650
BmrI	ACTGGG	1 cut(s)	1560
BmsI	GCATC	3 cut(s)	727, 1606, 1714
BmtI	GCTAGC	1 cut(s)	1497
BmuI	ACTGGG	1 cut(s)	1560
BpiI	GAAGAC	3 cut(s)	327, 339, 352
BpmI	CTGGAG	4 cut(s)	31, 707, 1019, 1752
Bpu10I	CCTNAGC	1 cut(s)	1941
BpuEI	CTTGAG	2 cut(s)	146, 1778
BpuMI	CCSGG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	1206
BsaHI	GRCGYC	3 cut(s)	240, 264, 357
BsaI	GGTCTC	2 cut(s)	49, 272
BsaJI	CCNNGG	2 cut(s)	59, 422
BsaWI	WCCGGW	2 cut(s)	91, 124
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 904, 934
Bsc4I	CCNNNNNNNGG	4 cut(s)	997, 1262, 1571, 1867
Bse118I	RCCGGY	2 cut(s)	124, 1044
Bse1I	ACTGG	4 cut(s)	610, 690, 1566, 1861
Bse3DI	GCAATG	1 cut(s)	1157
Bse8I	GATNNNNATC	1 cut(s)	1206
BseBI	CCWGG	5 cut(s)	49, 702, 1085, 1421, 1650
BseDI	CCNNGG	2 cut(s)	59, 422
BseGI	GGATG	8 cut(s)	742, 1108, 1207, 1446, 1705, 1876, 1930, 2047
BseJI	GATNNNNATC	1 cut(s)	1206
BseLI	CCNNNNNNNGG	4 cut(s)	997, 1262, 1571, 1867
BseMI	GCAATG	1 cut(s)	1157
BseMII	CTCAG	2 cut(s)	404, 407
BseNI	ACTGG	4 cut(s)	610, 690, 1566, 1861
BseRI	GAGGAG	5 cut(s)	473, 1016, 1065, 1587, 1755
BseX3I	CGGCCG	1 cut(s)	431
BseXI	GCAGC	9 cut(s)	144, 166, 682, 1116, 1616, 1714, 1729, 1764, 1924
BsgI	GTGCAG	1 cut(s)	689
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	7 cut(s)	25, 421, 433, 728, 1755, 1909, 2050
BshNI	GGYRCC	3 cut(s)	239, 263, 2025
BshTI	ACCGGT	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	434
BsiHKCI	CYCGRG	3 cut(s)	39, 1350, 1599
BsiSI	CCGG	6 cut(s)	61, 92, 125, 143, 173, 1045
BsiWI	CGTACG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	4 cut(s)	997, 1262, 1571, 1867
BsmAI	GTCTC	3 cut(s)	49, 272, 510
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	2 cut(s)	1495, 1704
BsnI	GGCC	7 cut(s)	25, 421, 433, 728, 1755, 1909, 2050
Bso31I	GGTCTC	2 cut(s)	49, 272
BsoBI	CYCGRG	3 cut(s)	39, 1350, 1599
Bsp1286I	GDGCHC	2 cut(s)	982, 1184
Bsp143I	GATC	8 cut(s)	307, 532, 589, 779, 1054, 1135, 1428, 1717
BspACI	CCGC	7 cut(s)	99, 149, 152, 194, 209, 430, 2046
BspANI	GGCC	7 cut(s)	25, 421, 433, 728, 1755, 1909, 2050
BspCNI	CTCAG	2 cut(s)	403, 408
BspHI	TCATGA	1 cut(s)	1989
BspMAI	CTGCAG	1 cut(s)	1782
BspMI	ACCTGC	3 cut(s)	124, 484, 999
BspOI	GCTAGC	1 cut(s)	1497
BspPI	GGATC	4 cut(s)	302, 584, 597, 1712
BspQI	GCTCTTC	2 cut(s)	973, 1767
BspT107I	GGYRCC	3 cut(s)	239, 263, 2025
BspTI	CTTAAG	2 cut(s)	1058, 1466
BspTNI	GGTCTC	2 cut(s)	49, 272
BsrDI	GCAATG	1 cut(s)	1157
BsrFI	RCCGGY	2 cut(s)	124, 1044
BsrI	ACTGG	4 cut(s)	610, 690, 1566, 1861
BssAI	RCCGGY	2 cut(s)	124, 1044
BssECI	CCNNGG	2 cut(s)	59, 422
BssMI	GATC	8 cut(s)	307, 532, 589, 779, 1054, 1135, 1428, 1717
BssNI	GRCGYC	3 cut(s)	240, 264, 357
Bst2UI	CCWGG	5 cut(s)	49, 702, 1085, 1421, 1650
Bst4CI	ACNGT	5 cut(s)	283, 340, 751, 1478, 1690
Bst6I	CTCTTC	4 cut(s)	216, 831, 973, 1767
BstACI	GRCGYC	3 cut(s)	240, 264, 357
BstAFI	CTTAAG	2 cut(s)	1058, 1466
BstC8I	GCNNGC	5 cut(s)	32, 36, 1042, 1495, 2048
BstDEI	CTNAG	6 cut(s)	7, 390, 416, 1327, 1722, 1941
BstF5I	GGATG	8 cut(s)	742, 1108, 1207, 1446, 1705, 1876, 1930, 2047
BstH2I	RGCGCY	2 cut(s)	243, 267
BstHHI	GCGC	2 cut(s)	242, 266
BstKTI	GATC	8 cut(s)	310, 535, 592, 782, 1057, 1138, 1431, 1720
BstMAI	GTCTC	3 cut(s)	49, 272, 510
BstMBI	GATC	8 cut(s)	307, 532, 589, 779, 1054, 1135, 1428, 1717
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 148, 157, 163, 200, 427, 697, 991
BstNI	CCWGG	5 cut(s)	49, 702, 1085, 1421, 1650
BstSCI	CCNGG	6 cut(s)	47, 59, 700, 1083, 1419, 1648
BstSFI	CTRYAG	6 cut(s)	579, 903, 1035, 1336, 1778, 1932
BstV1I	GCAGC	9 cut(s)	144, 166, 682, 1116, 1616, 1714, 1729, 1764, 1924
BstV2I	GAAGAC	3 cut(s)	327, 339, 352
BstX2I	RGATCY	3 cut(s)	589, 779, 1428
BstYI	RGATCY	3 cut(s)	589, 779, 1428
BstZI	CGGCCG	1 cut(s)	431
BsuI	GTATCC	1 cut(s)	1019
BsuRI	GGCC	7 cut(s)	25, 421, 433, 728, 1755, 1909, 2050
BtgZI	GCGATG	1 cut(s)	1821
BtrI	CACGTC	2 cut(s)	190, 1381
BtsCI	GGATG	8 cut(s)	742, 1108, 1207, 1446, 1705, 1876, 1930, 2047
BtsI	GCAGTG	3 cut(s)	210, 480, 1809
BtsIMutI	CAGTG	6 cut(s)	210, 480, 683, 1057, 1573, 1809
BveI	ACCTGC	3 cut(s)	124, 484, 999
Cac8I	GCNNGC	5 cut(s)	32, 36, 1042, 1495, 2048
CciI	TCATGA	1 cut(s)	1989
CfoI	GCGC	2 cut(s)	242, 266
Cfr10I	RCCGGY	2 cut(s)	124, 1044
Cfr13I	GGNCC	6 cut(s)	23, 63, 127, 1538, 1907, 2048
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	6 cut(s)	397, 436, 887, 1066, 1215, 2026
CspAI	ACCGGT	1 cut(s)	124
CviAII	CATG	8 cut(s)	55, 659, 1118, 1498, 1585, 1814, 1856, 1990
CviQI	GTAC	6 cut(s)	397, 436, 887, 1066, 1215, 2026
DdeI	CTNAG	6 cut(s)	7, 390, 416, 1327, 1722, 1941
DinI	GGCGCC	2 cut(s)	241, 265
DpnI	GATC	8 cut(s)	309, 534, 591, 781, 1056, 1137, 1430, 1719
DpnII	GATC	8 cut(s)	307, 532, 589, 779, 1054, 1135, 1428, 1717
DraI	TTTAAA	3 cut(s)	696, 873, 1366
EaeI	YGGCCR	1 cut(s)	431
EagI	CGGCCG	1 cut(s)	431
Eam1104I	CTCTTC	4 cut(s)	216, 831, 973, 1767
EarI	CTCTTC	4 cut(s)	216, 831, 973, 1767
EciI	GGCGGA	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	2 cut(s)	982, 1184
Eco31I	GGTCTC	2 cut(s)	49, 272
Eco32I	GATATC	1 cut(s)	1833
Eco47I	GGWCC	3 cut(s)	63, 127, 1538
Eco52I	CGGCCG	1 cut(s)	431
Eco57I	CTGAAG	3 cut(s)	351, 507, 1619
Eco88I	CYCGRG	3 cut(s)	39, 1350, 1599
EcoO109I	RGGNCCY	1 cut(s)	1538
EcoRII	CCWGG	5 cut(s)	47, 700, 1083, 1419, 1648
EcoRV	GATATC	1 cut(s)	1833
EcoT38I	GRGCYC	2 cut(s)	982, 1184
EgeI	GGCGCC	2 cut(s)	241, 265
EheI	GGCGCC	2 cut(s)	241, 265
FaeI	CATG	8 cut(s)	58, 662, 1121, 1501, 1588, 1817, 1859, 1993
FalI	AAGNNNNNCTT	6 cut(s)	629, 661, 1637, 1669, 1896, 1928
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	8 cut(s)	54, 658, 1117, 1497, 1584, 1813, 1855, 1989
FauI	CCCGC	2 cut(s)	106, 2039
FauNDI	CATATG	1 cut(s)	1822
FbaI	TGATCA	1 cut(s)	532
FblI	GTMKAC	3 cut(s)	1284, 1335, 1692
FokI	GGATG	8 cut(s)	749, 1115, 1214, 1453, 1692, 1883, 1937, 2054
FriOI	GRGCYC	2 cut(s)	982, 1184
FspBI	CTAG	7 cut(s)	372, 509, 864, 1188, 1221, 1494, 1542
GlaI	GCGC	2 cut(s)	241, 265
GsuI	CTGGAG	4 cut(s)	31, 707, 1019, 1752
HaeII	RGCGCY	2 cut(s)	243, 267
HaeIII	GGCC	7 cut(s)	25, 421, 433, 728, 1755, 1909, 2050
HapII	CCGG	6 cut(s)	61, 92, 125, 143, 173, 1045
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	2 cut(s)	242, 266
Hin1I	GRCGYC	3 cut(s)	240, 264, 357
Hin1II	CATG	8 cut(s)	58, 662, 1121, 1501, 1588, 1817, 1859, 1993
Hin6I	GCGC	2 cut(s)	240, 264
HinP1I	GCGC	2 cut(s)	240, 264
HincII	GTYRAC	3 cut(s)	937, 1693, 1737
HindII	GTYRAC	3 cut(s)	937, 1693, 1737
HinfI	GANTC	7 cut(s)	254, 375, 380, 448, 649, 818, 919
HpaI	GTTAAC	2 cut(s)	937, 1737
HpaII	CCGG	6 cut(s)	61, 92, 125, 143, 173, 1045
HphI	GGTGA	2 cut(s)	1466, 1512
Hpy166II	GTNNAC	8 cut(s)	350, 517, 937, 1285, 1336, 1693, 1737, 1807
Hpy8I	GTNNAC	8 cut(s)	350, 517, 937, 1285, 1336, 1693, 1737, 1807
Hpy99I	CGWCG	3 cut(s)	308, 329, 344
HpyAV	CCTTC	6 cut(s)	14, 230, 289, 712, 1118, 1353
HpyCH4III	ACNGT	5 cut(s)	283, 340, 751, 1478, 1690
HpyCH4IV	ACGT	7 cut(s)	189, 357, 399, 956, 1281, 1380, 1678
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 148, 157, 163, 200, 427, 697, 991
HpyF3I	CTNAG	6 cut(s)	7, 390, 416, 1327, 1722, 1941
HpySE526I	ACGT	7 cut(s)	189, 357, 399, 956, 1281, 1380, 1678
Hsp92I	GRCGYC	3 cut(s)	240, 264, 357
Hsp92II	CATG	8 cut(s)	58, 662, 1121, 1501, 1588, 1817, 1859, 1993
HspAI	GCGC	2 cut(s)	240, 264
KasI	GGCGCC	2 cut(s)	239, 263
KpnI	GGTACC	1 cut(s)	2029
Ksp22I	TGATCA	1 cut(s)	532
KspAI	GTTAAC	2 cut(s)	937, 1737
Kzo9I	GATC	8 cut(s)	307, 532, 589, 779, 1054, 1135, 1428, 1717
LguI	GCTCTTC	2 cut(s)	973, 1767
LmnI	GCTCC	6 cut(s)	678, 688, 793, 1003, 1078, 1768
Lsp1109I	GCAGC	9 cut(s)	144, 166, 682, 1116, 1616, 1714, 1729, 1764, 1924
LweI	GCATC	3 cut(s)	727, 1606, 1714
MaeI	CTAG	7 cut(s)	372, 509, 864, 1188, 1221, 1494, 1542
MaeII	ACGT	7 cut(s)	189, 357, 399, 956, 1281, 1380, 1678
MaeIII	GTNAC	4 cut(s)	639, 745, 1079, 1927
MalI	GATC	8 cut(s)	309, 534, 591, 781, 1056, 1137, 1430, 1719
MboI	GATC	8 cut(s)	307, 532, 589, 779, 1054, 1135, 1428, 1717
MfeI	CAATTG	1 cut(s)	1451
MflI	RGATCY	3 cut(s)	589, 779, 1428
MhlI	GDGCHC	2 cut(s)	982, 1184
MluCI	AATT	9 cut(s)	526, 908, 1225, 1237, 1260, 1361, 1451, 1525, 1878
Mly113I	GGCGCC	2 cut(s)	240, 264
MlyI	GAGTC	3 cut(s)	384, 827, 913
MmeI	TCCRAC	4 cut(s)	265, 408, 423, 700
MroXI	GAANNNNTTC	1 cut(s)	1632
MspA1I	CMGCKG	3 cut(s)	157, 1660, 1742
MspCI	CTTAAG	2 cut(s)	1058, 1466
MspI	CCGG	6 cut(s)	61, 92, 125, 143, 173, 1045
MspR9I	CCNGG	6 cut(s)	49, 61, 702, 1085, 1421, 1650
MunI	CAATTG	1 cut(s)	1451
Mva1269I	GAATGC	2 cut(s)	1495, 1704
MvaI	CCWGG	5 cut(s)	49, 702, 1085, 1421, 1650
MwoI	GCNNNNNNNGC	8 cut(s)	31, 148, 157, 163, 200, 427, 697, 991
NarI	GGCGCC	2 cut(s)	240, 264
NciI	CCSGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	1822
NdeII	GATC	8 cut(s)	307, 532, 589, 779, 1054, 1135, 1428, 1717
NheI	GCTAGC	1 cut(s)	1493
NlaIII	CATG	8 cut(s)	58, 662, 1121, 1501, 1588, 1817, 1859, 1993
NmeAIII	GCCGAG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	1350
PagI	TCATGA	1 cut(s)	1989
PceI	AGGCCT	1 cut(s)	421
PciSI	GCTCTTC	2 cut(s)	973, 1767
PctI	GAATGC	2 cut(s)	1495, 1704
PdmI	GAANNNNTTC	1 cut(s)	1632
PfeI	GAWTC	4 cut(s)	254, 380, 448, 649
Pfl23II	CGTACG	1 cut(s)	435
PflFI	GACNNNGTC	1 cut(s)	338
PinAI	ACCGGT	1 cut(s)	124
PleI	GAGTC	3 cut(s)	383, 826, 913
PluTI	GGCGCC	2 cut(s)	243, 267
PpsI	GAGTC	3 cut(s)	383, 826, 913
PpuMI	RGGWCCY	1 cut(s)	1538
Psp5II	RGGWCCY	1 cut(s)	1538
Psp6I	CCWGG	5 cut(s)	47, 700, 1083, 1419, 1648
PspGI	CCWGG	5 cut(s)	47, 700, 1083, 1419, 1648
PspLI	CGTACG	1 cut(s)	435
PspPI	GGNCC	6 cut(s)	23, 63, 127, 1538, 1907, 2048
PspPPI	RGGWCCY	1 cut(s)	1538
PstI	CTGCAG	1 cut(s)	1782
PsuI	RGATCY	3 cut(s)	589, 779, 1428
PsyI	GACNNNGTC	1 cut(s)	338
PvuII	CAGCTG	3 cut(s)	157, 1660, 1742
RsaI	GTAC	6 cut(s)	398, 437, 888, 1067, 1216, 2027
RsaNI	GTAC	6 cut(s)	397, 436, 887, 1066, 1215, 2026
SalI	GTCGAC	1 cut(s)	1691
SapI	GCTCTTC	2 cut(s)	973, 1767
Sau3AI	GATC	8 cut(s)	307, 532, 589, 779, 1054, 1135, 1428, 1717
Sau96I	GGNCC	6 cut(s)	23, 63, 127, 1538, 1907, 2048
ScaI	AGTACT	1 cut(s)	1067
SchI	GAGTC	3 cut(s)	384, 827, 913
ScrFI	CCNGG	6 cut(s)	49, 61, 702, 1085, 1421, 1650
SduI	GDGCHC	2 cut(s)	982, 1184
SfaNI	GCATC	3 cut(s)	727, 1606, 1714
SfcI	CTRYAG	6 cut(s)	579, 903, 1035, 1336, 1778, 1932
SfoI	GGCGCC	2 cut(s)	241, 265
Sfr274I	CTCGAG	1 cut(s)	1350
SinI	GGWCC	3 cut(s)	63, 127, 1538
SlaI	CTCGAG	1 cut(s)	1350
SmlI	CTYRAG	5 cut(s)	161, 1058, 1350, 1466, 1757
SmoI	CTYRAG	5 cut(s)	161, 1058, 1350, 1466, 1757
Sse9I	AATT	9 cut(s)	526, 908, 1225, 1237, 1260, 1361, 1451, 1525, 1878
SseBI	AGGCCT	1 cut(s)	421
SsiI	CCGC	7 cut(s)	99, 149, 152, 194, 209, 430, 2046
SspDI	GGCGCC	2 cut(s)	239, 263
SspMI	CTAG	7 cut(s)	372, 509, 864, 1188, 1221, 1494, 1542
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	6 cut(s)	47, 59, 700, 1083, 1419, 1648
TaaI	ACNGT	5 cut(s)	283, 340, 751, 1478, 1690
TaiI	ACGT	7 cut(s)	192, 360, 402, 959, 1284, 1383, 1681
TaqI	TCGA	7 cut(s)	18, 183, 378, 521, 952, 1351, 1692
TasI	AATT	9 cut(s)	526, 908, 1225, 1237, 1260, 1361, 1451, 1525, 1878
TatI	WGTACW	1 cut(s)	1065
TauI	GCSGC	2 cut(s)	154, 433
TfiI	GAWTC	4 cut(s)	254, 380, 448, 649
TscAI	CASTG	6 cut(s)	210, 487, 690, 1057, 1573, 1809
TseI	GCWGC	9 cut(s)	154, 157, 670, 1129, 1604, 1702, 1742, 1777, 1937
TspGWI	ACGGA	2 cut(s)	842, 912
TspRI	CASTG	6 cut(s)	210, 487, 690, 1057, 1573, 1809
Tth111I	GACNNNGTC	1 cut(s)	338
Vha464I	CTTAAG	2 cut(s)	1058, 1466
VpaK11BI	GGWCC	3 cut(s)	63, 127, 1538
XapI	RAATTY	4 cut(s)	908, 1237, 1361, 1525
XbaI	TCTAGA	2 cut(s)	508, 1187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	1350
XmiI	GTMKAC	3 cut(s)	1284, 1335, 1692
XmnI	GAANNNNTTC	1 cut(s)	1632
XspI	CTAG	7 cut(s)	372, 509, 864, 1188, 1221, 1494, 1542
ZraI	GACGTC	1 cut(s)	358
ZrmI	AGTACT	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.