DNA-directed RNA polymerase III subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G49530 |
| fragaria_vesca | FvH4_1g13700 FvH4_1g13700 FvH4_2g10200 |
| malus_domestica | MD02G1151400.v1.1 MD15G1266000.v1.1 |
| prunus_persica | Prupe.7G151600_v2.0.a1 Prupe.7G151600_v2.0.a1 |
| pyrus_communis | pycom02g11880 |
| rosa_chinensis | RchiOBHm_Chr2g0102021 |
| rosa_laevigata | RLG00000017127 |
| rosa_multiflora | Rmu_sc0000157.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00140820 |
| rosa_rugosa | Rorug02G0104100.1 |
| rosa_samantha | Rh2AG152100 Rh2BG157500 Rh2CG157500 Rh2DG157600 |
| rosa_wichuraiana | Rw2G011880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1447 |
| AccI | GTMKAC | 1 cut(s) | 65 |
| AccII | CGCG | 1 cut(s) | 1063 |
| AciI | CCGC | 6 cut(s) | 80, 298, 446, 611, 1569, 1602 |
| AclWI | GGATC | 2 cut(s) | 1265, 1443 |
| AcoI | YGGCCR | 1 cut(s) | 384 |
| AcsI | RAATTY | 7 cut(s) | 13, 784, 814, 908, 1078, 1517, 1532 |
| AcuI | CTGAAG | 2 cut(s) | 617, 1509 |
| AfaI | GTAC | 2 cut(s) | 590, 1093 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 520, 835 |
| AflII | CTTAAG | 1 cut(s) | 581 |
| AflIII | ACRYGT | 1 cut(s) | 1061 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| Alw26I | GTCTC | 2 cut(s) | 507, 886 |
| AlwI | GGATC | 2 cut(s) | 1265, 1443 |
| Ama87I | CYCGRG | 1 cut(s) | 1149 |
| AoxI | GGCC | 1 cut(s) | 384 |
| ApeKI | GCWGC | 5 cut(s) | 157, 1103, 1154, 1295, 1330 |
| ApoI | RAATTY | 7 cut(s) | 13, 784, 814, 908, 1078, 1517, 1532 |
| AseI | ATTAAT | 1 cut(s) | 1548 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 14, 618 |
| AspLEI | GCGC | 2 cut(s) | 32, 1448 |
| AspS9I | GGNCC | 3 cut(s) | 4, 275, 1454 |
| AsuC2I | CCSGG | 1 cut(s) | 950 |
| AsuHPI | GGTGA | 5 cut(s) | 414, 1383, 1391, 1490, 1607 |
| AvaI | CYCGRG | 1 cut(s) | 1149 |
| AvaII | GGWCC | 3 cut(s) | 4, 275, 1454 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 341, 374 |
| BanII | GRGCYC | 1 cut(s) | 446 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1422, 1454 |
| BbsI | GAAGAC | 2 cut(s) | 255, 300 |
| BbvI | GCAGC | 5 cut(s) | 169, 1090, 1166, 1282, 1317 |
| BccI | CCATC | 5 cut(s) | 109, 286, 295, 397, 1592 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 590, 624 |
| BciVI | GTATCC | 1 cut(s) | 715 |
| BcnI | CCSGG | 1 cut(s) | 950 |
| BcoDI | GTCTC | 2 cut(s) | 507, 886 |
| BfaI | CTAG | 6 cut(s) | 33, 474, 768, 824, 1047, 1275 |
| BfmI | CTRYAG | 2 cut(s) | 558, 1331 |
| BfrI | CTTAAG | 1 cut(s) | 581 |
| BfuI | GTATCC | 1 cut(s) | 715 |
| BisI | GCNGC | 6 cut(s) | 80, 158, 1104, 1155, 1296, 1331 |
| BlpI | GCTNAGC | 1 cut(s) | 1464 |
| BlsI | GCNGC | 6 cut(s) | 81, 159, 1105, 1156, 1297, 1332 |
| BmcAI | AGTACT | 1 cut(s) | 590 |
| Bme1390I | CCNGG | 1 cut(s) | 950 |
| Bme18I | GGWCC | 3 cut(s) | 4, 275, 1454 |
| BmeT110I | CYCGRG | 1 cut(s) | 1149 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 275, 1454 |
| BmiI | GGNNCC | 5 cut(s) | 6, 348, 555, 675, 1317 |
| BmrFI | CCNGG | 1 cut(s) | 950 |
| BmrI | ACTGGG | 1 cut(s) | 988 |
| BmsI | GCATC | 2 cut(s) | 214, 276 |
| BmuI | ACTGGG | 1 cut(s) | 988 |
| BpiI | GAAGAC | 2 cut(s) | 255, 300 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1464 |
| BpuEI | CTTGAG | 2 cut(s) | 868, 882 |
| BpuMI | CCSGG | 1 cut(s) | 950 |
| BsaAI | YACGTR | 1 cut(s) | 1220 |
| BsaBI | GATNNNNATC | 1 cut(s) | 726 |
| BsaI | GGTCTC | 1 cut(s) | 507 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 520, 835 |
| Bse118I | RCCGGY | 1 cut(s) | 567 |
| Bse1I | ACTGG | 1 cut(s) | 983 |
| Bse8I | GATNNNNATC | 1 cut(s) | 726 |
| BseGI | GGATG | 5 cut(s) | 120, 229, 306, 631, 777 |
| BseJI | GATNNNNATC | 1 cut(s) | 726 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 520, 835 |
| BseMII | CTCAG | 3 cut(s) | 306, 381, 659 |
| BseNI | ACTGG | 1 cut(s) | 983 |
| BseRI | GAGGAG | 1 cut(s) | 1308 |
| BseXI | GCAGC | 5 cut(s) | 169, 1090, 1166, 1282, 1317 |
| BsgI | GTGCAG | 2 cut(s) | 176, 1281 |
| Bsh1236I | CGCG | 1 cut(s) | 1063 |
| BshFI | GGCC | 1 cut(s) | 386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1149 |
| BsiSI | CCGG | 2 cut(s) | 568, 950 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 520, 835 |
| BsmAI | GTCTC | 2 cut(s) | 507, 886 |
| BsnI | GGCC | 1 cut(s) | 386 |
| Bso31I | GGTCTC | 1 cut(s) | 507 |
| BsoBI | CYCGRG | 1 cut(s) | 1149 |
| Bsp1286I | GDGCHC | 1 cut(s) | 446 |
| Bsp143I | GATC | 8 cut(s) | 577, 601, 745, 754, 1234, 1270, 1396, 1435 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1464 |
| BspACI | CCGC | 6 cut(s) | 80, 298, 446, 611, 1569, 1602 |
| BspANI | GGCC | 1 cut(s) | 386 |
| BspCNI | CTCAG | 3 cut(s) | 307, 380, 658 |
| BspFNI | CGCG | 1 cut(s) | 1063 |
| BspLI | GGNNCC | 5 cut(s) | 6, 348, 555, 675, 1317 |
| BspMAI | CTGCAG | 1 cut(s) | 1335 |
| BspPI | GGATC | 2 cut(s) | 1265, 1443 |
| BspQI | GCTCTTC | 1 cut(s) | 519 |
| BspTI | CTTAAG | 1 cut(s) | 581 |
| BspTNI | GGTCTC | 1 cut(s) | 507 |
| BsrFI | RCCGGY | 1 cut(s) | 567 |
| BsrI | ACTGG | 1 cut(s) | 983 |
| BssAI | RCCGGY | 1 cut(s) | 567 |
| BssMI | GATC | 8 cut(s) | 577, 601, 745, 754, 1234, 1270, 1396, 1435 |
| Bst4CI | ACNGT | 3 cut(s) | 212, 238, 1031 |
| Bst6I | CTCTTC | 4 cut(s) | 330, 519, 1034, 1263 |
| BstAFI | CTTAAG | 1 cut(s) | 581 |
| BstBAI | YACGTR | 1 cut(s) | 1220 |
| BstC8I | GCNNGC | 4 cut(s) | 446, 565, 642, 1108 |
| BstDEI | CTNAG | 6 cut(s) | 315, 367, 645, 866, 1464, 1497 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 833 |
| BstF5I | GGATG | 5 cut(s) | 120, 229, 306, 631, 777 |
| BstFNI | CGCG | 1 cut(s) | 1063 |
| BstHHI | GCGC | 2 cut(s) | 32, 1448 |
| BstKTI | GATC | 8 cut(s) | 580, 604, 748, 757, 1237, 1273, 1399, 1438 |
| BstMAI | GTCTC | 2 cut(s) | 507, 886 |
| BstMBI | GATC | 8 cut(s) | 577, 601, 745, 754, 1234, 1270, 1396, 1435 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 295, 514, 1566 |
| BstNSI | RCATGY | 1 cut(s) | 644 |
| BstSCI | CCNGG | 1 cut(s) | 948 |
| BstSFI | CTRYAG | 2 cut(s) | 558, 1331 |
| BstSNI | TACGTA | 1 cut(s) | 1220 |
| BstUI | CGCG | 1 cut(s) | 1063 |
| BstV1I | GCAGC | 5 cut(s) | 169, 1090, 1166, 1282, 1317 |
| BstV2I | GAAGAC | 2 cut(s) | 255, 300 |
| BstX2I | RGATCY | 1 cut(s) | 1435 |
| BstYI | RGATCY | 1 cut(s) | 1435 |
| BsuI | GTATCC | 1 cut(s) | 715 |
| BsuRI | GGCC | 1 cut(s) | 386 |
| BtsCI | GGATG | 5 cut(s) | 120, 229, 306, 631, 777 |
| BtsI | GCAGTG | 2 cut(s) | 606, 1521 |
| BtsIMutI | CAGTG | 5 cut(s) | 217, 580, 606, 1073, 1521 |
| Cac8I | GCNNGC | 4 cut(s) | 446, 565, 642, 1108 |
| CfoI | GCGC | 2 cut(s) | 32, 1448 |
| Cfr10I | RCCGGY | 1 cut(s) | 567 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 275, 1454 |
| Csp6I | GTAC | 2 cut(s) | 589, 1092 |
| CviQI | GTAC | 2 cut(s) | 589, 1092 |
| DdeI | CTNAG | 6 cut(s) | 315, 367, 645, 866, 1464, 1497 |
| DpnI | GATC | 8 cut(s) | 579, 603, 747, 756, 1236, 1272, 1398, 1437 |
| DpnII | GATC | 8 cut(s) | 577, 601, 745, 754, 1234, 1270, 1396, 1435 |
| DraI | TTTAAA | 1 cut(s) | 1015 |
| EaeI | YGGCCR | 1 cut(s) | 384 |
| Eam1104I | CTCTTC | 4 cut(s) | 330, 519, 1034, 1263 |
| EarI | CTCTTC | 4 cut(s) | 330, 519, 1034, 1263 |
| Eco105I | TACGTA | 1 cut(s) | 1220 |
| Eco24I | GRGCYC | 1 cut(s) | 446 |
| Eco31I | GGTCTC | 1 cut(s) | 507 |
| Eco47I | GGWCC | 3 cut(s) | 4, 275, 1454 |
| Eco57I | CTGAAG | 2 cut(s) | 617, 1509 |
| Eco88I | CYCGRG | 1 cut(s) | 1149 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 833 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1454 |
| EcoRI | GAATTC | 3 cut(s) | 1078, 1517, 1532 |
| EcoT38I | GRGCYC | 1 cut(s) | 446 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 116, 148, 575, 607 |
| FauI | CCCGC | 1 cut(s) | 453 |
| FblI | GTMKAC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 6 cut(s) | 80, 158, 1104, 1155, 1296, 1331 |
| FokI | GGATG | 5 cut(s) | 127, 236, 313, 638, 764 |
| FriOI | GRGCYC | 1 cut(s) | 446 |
| Fsp4HI | GCNGC | 6 cut(s) | 80, 158, 1104, 1155, 1296, 1331 |
| FspBI | CTAG | 6 cut(s) | 33, 474, 768, 824, 1047, 1275 |
| FspI | TGCGCA | 1 cut(s) | 1447 |
| GlaI | GCGC | 2 cut(s) | 31, 1447 |
| GluI | GCNGC | 6 cut(s) | 80, 158, 1104, 1155, 1296, 1331 |
| HaeIII | GGCC | 1 cut(s) | 386 |
| HapII | CCGG | 2 cut(s) | 568, 950 |
| HhaI | GCGC | 2 cut(s) | 32, 1448 |
| Hin6I | GCGC | 2 cut(s) | 30, 1446 |
| HinP1I | GCGC | 2 cut(s) | 30, 1446 |
| HincII | GTYRAC | 1 cut(s) | 460 |
| HindII | GTYRAC | 1 cut(s) | 460 |
| HindIII | AAGCTT | 1 cut(s) | 1466 |
| HinfI | GANTC | 6 cut(s) | 136, 251, 305, 461, 799, 860 |
| HpaII | CCGG | 2 cut(s) | 568, 950 |
| HphI | GGTGA | 5 cut(s) | 414, 1383, 1391, 1490, 1607 |
| Hpy166II | GTNNAC | 4 cut(s) | 66, 422, 460, 1117 |
| Hpy188I | TCNGA | 8 cut(s) | 370, 636, 795, 812, 1084, 1141, 1247, 1489 |
| Hpy8I | GTNNAC | 4 cut(s) | 66, 422, 460, 1117 |
| HpyAV | CCTTC | 4 cut(s) | 479, 492, 900, 1417 |
| HpyCH4III | ACNGT | 3 cut(s) | 212, 238, 1031 |
| HpyCH4IV | ACGT | 2 cut(s) | 479, 1219 |
| HpyCH4V | TGCA | 9 cut(s) | 149, 157, 227, 289, 1106, 1203, 1298, 1333, 1355 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 295, 514, 1566 |
| HpyF3I | CTNAG | 6 cut(s) | 315, 367, 645, 866, 1464, 1497 |
| HpySE526I | ACGT | 2 cut(s) | 479, 1219 |
| HspAI | GCGC | 2 cut(s) | 30, 1446 |
| Kzo9I | GATC | 8 cut(s) | 577, 601, 745, 754, 1234, 1270, 1396, 1435 |
| LguI | GCTCTTC | 1 cut(s) | 519 |
| LmnI | GCTCC | 2 cut(s) | 601, 1321 |
| Lsp1109I | GCAGC | 5 cut(s) | 169, 1090, 1166, 1282, 1317 |
| LweI | GCATC | 2 cut(s) | 214, 276 |
| MaeI | CTAG | 6 cut(s) | 33, 474, 768, 824, 1047, 1275 |
| MaeII | ACGT | 2 cut(s) | 479, 1219 |
| MaeIII | GTNAC | 4 cut(s) | 126, 232, 374, 1288 |
| MalI | GATC | 8 cut(s) | 579, 603, 747, 756, 1236, 1272, 1398, 1437 |
| MboI | GATC | 8 cut(s) | 577, 601, 745, 754, 1234, 1270, 1396, 1435 |
| MflI | RGATCY | 1 cut(s) | 1435 |
| MhlI | GDGCHC | 1 cut(s) | 446 |
| MluI | ACGCGT | 1 cut(s) | 1061 |
| MlyI | GAGTC | 3 cut(s) | 245, 314, 455 |
| MmeI | TCCRAC | 1 cut(s) | 225 |
| MroXI | GAANNNNTTC | 2 cut(s) | 14, 618 |
| MseI | TTAA | 8 cut(s) | 240, 582, 960, 1014, 1229, 1470, 1548, 1586 |
| MslI | CAYNNNNRTG | 2 cut(s) | 453, 855 |
| MspA1I | CMGCKG | 2 cut(s) | 1295, 1569 |
| MspCI | CTTAAG | 1 cut(s) | 581 |
| MspI | CCGG | 2 cut(s) | 568, 950 |
| MspR9I | CCNGG | 1 cut(s) | 950 |
| MvnI | CGCG | 1 cut(s) | 1063 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 295, 514, 1566 |
| NciI | CCSGG | 1 cut(s) | 950 |
| NdeII | GATC | 8 cut(s) | 577, 601, 745, 754, 1234, 1270, 1396, 1435 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 348, 555, 675, 1317 |
| NmeAIII | GCCGAG | 1 cut(s) | 362 |
| NmuCI | GTSAC | 2 cut(s) | 374, 1288 |
| NsbI | TGCGCA | 1 cut(s) | 1447 |
| NspI | RCATGY | 1 cut(s) | 644 |
| PaeI | GCATGC | 1 cut(s) | 644 |
| PaeR7I | CTCGAG | 1 cut(s) | 1149 |
| PciSI | GCTCTTC | 1 cut(s) | 519 |
| PdmI | GAANNNNTTC | 2 cut(s) | 14, 618 |
| PfeI | GAWTC | 3 cut(s) | 136, 799, 860 |
| PflFI | GACNNNGTC | 1 cut(s) | 61 |
| PkrI | GCNGC | 6 cut(s) | 81, 159, 1105, 1156, 1297, 1332 |
| PleI | GAGTC | 3 cut(s) | 245, 313, 455 |
| PpsI | GAGTC | 3 cut(s) | 245, 313, 455 |
| Ppu21I | YACGTR | 1 cut(s) | 1220 |
| PpuMI | RGGWCCY | 1 cut(s) | 1454 |
| PshBI | ATTAAT | 1 cut(s) | 1548 |
| Psp5II | RGGWCCY | 1 cut(s) | 1454 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 348, 555, 675, 1317 |
| PspPI | GGNCC | 3 cut(s) | 4, 275, 1454 |
| PspPPI | RGGWCCY | 1 cut(s) | 1454 |
| PspXI | VCTCGAGB | 1 cut(s) | 1149 |
| PstI | CTGCAG | 1 cut(s) | 1335 |
| PsuI | RGATCY | 1 cut(s) | 1435 |
| PsyI | GACNNNGTC | 1 cut(s) | 61 |
| PvuII | CAGCTG | 1 cut(s) | 1295 |
| RsaI | GTAC | 2 cut(s) | 590, 1093 |
| RsaNI | GTAC | 2 cut(s) | 589, 1092 |
| RseI | CAYNNNNRTG | 2 cut(s) | 453, 855 |
| SapI | GCTCTTC | 1 cut(s) | 519 |
| SaqAI | TTAA | 8 cut(s) | 240, 582, 960, 1014, 1229, 1470, 1548, 1586 |
| SatI | GCNGC | 6 cut(s) | 80, 158, 1104, 1155, 1296, 1331 |
| Sau3AI | GATC | 8 cut(s) | 577, 601, 745, 754, 1234, 1270, 1396, 1435 |
| Sau96I | GGNCC | 3 cut(s) | 4, 275, 1454 |
| ScaI | AGTACT | 1 cut(s) | 590 |
| SchI | GAGTC | 3 cut(s) | 245, 314, 455 |
| ScrFI | CCNGG | 1 cut(s) | 950 |
| SduI | GDGCHC | 1 cut(s) | 446 |
| SfaNI | GCATC | 2 cut(s) | 214, 276 |
| SfcI | CTRYAG | 2 cut(s) | 558, 1331 |
| Sfr274I | CTCGAG | 1 cut(s) | 1149 |
| SinI | GGWCC | 3 cut(s) | 4, 275, 1454 |
| SlaI | CTCGAG | 1 cut(s) | 1149 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 453, 855 |
| SmlI | CTYRAG | 4 cut(s) | 581, 883, 897, 1149 |
| SmoI | CTYRAG | 4 cut(s) | 581, 883, 897, 1149 |
| SnaBI | TACGTA | 1 cut(s) | 1220 |
| SphI | GCATGC | 1 cut(s) | 644 |
| SsiI | CCGC | 6 cut(s) | 80, 298, 446, 611, 1569, 1602 |
| SspI | AATATT | 1 cut(s) | 873 |
| SspMI | CTAG | 6 cut(s) | 33, 474, 768, 824, 1047, 1275 |
| StyD4I | CCNGG | 1 cut(s) | 948 |
| TaaI | ACNGT | 3 cut(s) | 212, 238, 1031 |
| TaiI | ACGT | 2 cut(s) | 482, 1222 |
| TaqI | TCGA | 3 cut(s) | 18, 163, 1150 |
| TatI | WGTACW | 1 cut(s) | 588 |
| TauI | GCSGC | 1 cut(s) | 82 |
| TfiI | GAWTC | 3 cut(s) | 136, 799, 860 |
| Tru1I | TTAA | 8 cut(s) | 240, 582, 960, 1014, 1229, 1470, 1548, 1586 |
| Tru9I | TTAA | 8 cut(s) | 240, 582, 960, 1014, 1229, 1470, 1548, 1586 |
| TscAI | CASTG | 5 cut(s) | 217, 580, 613, 1080, 1528 |
| TseFI | GTSAC | 2 cut(s) | 374, 1288 |
| TseI | GCWGC | 5 cut(s) | 157, 1103, 1154, 1295, 1330 |
| Tsp45I | GTSAC | 2 cut(s) | 374, 1288 |
| TspDTI | ATGAA | 7 cut(s) | 36, 134, 348, 873, 925, 1052, 1158 |
| TspRI | CASTG | 5 cut(s) | 217, 580, 613, 1080, 1528 |
| Tth111I | GACNNNGTC | 1 cut(s) | 61 |
| Vha464I | CTTAAG | 1 cut(s) | 581 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 275, 1454 |
| VspI | ATTAAT | 1 cut(s) | 1548 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 833 |
| XapI | RAATTY | 7 cut(s) | 13, 784, 814, 908, 1078, 1517, 1532 |
| XceI | RCATGY | 1 cut(s) | 644 |
| XhoI | CTCGAG | 1 cut(s) | 1149 |
| XmiI | GTMKAC | 1 cut(s) | 65 |
| XmnI | GAANNNNTTC | 2 cut(s) | 14, 618 |
| XspI | CTAG | 6 cut(s) | 33, 474, 768, 824, 1047, 1275 |
| ZrmI | AGTACT | 1 cut(s) | 590 |