Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017058

Physical Location & Seq

Genomic Coordinates Reverse (-)

9504901 .. 9510283

Gene Structure 5383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGCAATAATTCATCTCCCGTAATGAACAGTCCAGATCAGCCTGACACAAGCGCCCCCACGCCCAAACCACAGCCCGCCAAGATGGTTAAACTCGAAGACACTGAAAAGAAGATTTTTCATAAGAAACTCAAAGATGTTGAGATTAGTGTTCCGATAGTGTATGGCAATATTGCATTCTGGCTCGGTAAGAAGGCAAACGAGTACCAATCACATAAGTGGACCGTGTATGTTCGTGGGGCAACCAATGAGGATCTGGGAGTGGTGATAAAGCGTGTTGTTTTCCAGTTGCATTCTAGTTTCAATAATCCCACAAGGGTGGTTGAGTCACCGCCATTTGAATTGTCTGAATGTGGCTGGGGTGAATTTGAGATCGCCATTACACTATTTTTCCACAGTGATGTTTGTGAAAAGCCCCTAAACTTATTTCATCATTTGAAGTTGTATCCAGAAGATGAATCTGGTCCTATATCGACCAAGAAACCTGTGGTCGTGGAATCCTATGATGAGATTGTGTTCCCTGAGCCTTCAGAGAGTTTTCTAGCTCGTGTCCAGAATCACCCTGCTATAGTTTCCCCCAGATTACCTTCTGGTTTGACTTTGCCACCTCCTGTGCCAGTTGAAGACCCAAGTAAAAGAAAGAGAGGTGACACAAAAGATCATCCCCTGACCCAGTGGTTCATGAATTTTTCAGAAGCTGATGAGCTTCTACAACTGGCTGCAGCTCGTCAACAGGTTCAAGCTCATATTGCTAAATTTCGAAGAGAGATAAGTTTGATGGATGTGCAACAACAACAAGTGAATTCTTTCTCCGACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

274

Amino Acids

30.97

Weight (kDa)

6.07

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	70 - 149	1.4e-30	YEATS family
pYEATS	PF20305	73 - 133	5.1e-11	prokaryotic YEATS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45600 AT5G45600
fragaria_vesca	FvH4_2g10790
malus_domestica	MD10G1061200.v1.1
prunus_persica	Prupe.8G082000_v2.0.a1
pyrus_communis	pycom05g04440 pycom10g04710
rosa_chinensis	RchiOBHm_Chr6g0268561
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162700 Rh6BG166800 Rh6CG160500
rosa_wichuraiana	Rw0G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	78, 332
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	4 cut(s)	365, 685, 755, 802
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	5 cut(s)	304, 341, 439, 623, 740
AleI	CACNNNNGTG	2 cut(s)	217, 317
AluBI	AGCT	5 cut(s)	545, 698, 706, 725, 743
AluI	AGCT	5 cut(s)	545, 698, 706, 725, 743
AlwI	GGATC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	698
ApeKI	GCWGC	2 cut(s)	719, 722
ApoI	RAATTY	4 cut(s)	365, 685, 755, 802
Asp700I	GAANNNNTTC	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	222, 464
AsuHPI	GGTGA	5 cut(s)	277, 321, 374, 551, 659
AsuII	TTCGAA	1 cut(s)	760
AvaII	GGWCC	2 cut(s)	222, 464
BauI	CACGAG	1 cut(s)	546
BbsI	GAAGAC	2 cut(s)	105, 630
BbvI	GCAGC	2 cut(s)	706, 734
BccI	CCATC	2 cut(s)	79, 772
BciVI	GTATCC	1 cut(s)	456
BfaI	CTAG	2 cut(s)	297, 542
BfmI	CTRYAG	2 cut(s)	567, 720
BfoI	RGCGCY	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	2 cut(s)	720, 723
BlsI	GCNGC	2 cut(s)	721, 724
Bme18I	GGWCC	2 cut(s)	222, 464
BmgT120I	GGNCC	2 cut(s)	222, 464
BmrI	ACTGGG	1 cut(s)	667
BmuI	ACTGGG	1 cut(s)	667
BpiI	GAAGAC	2 cut(s)	105, 630
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	760
Bse1I	ACTGG	4 cut(s)	286, 617, 673, 720
BseGI	GGATG	2 cut(s)	661, 787
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	4 cut(s)	286, 617, 673, 720
BseXI	GCAGC	2 cut(s)	706, 734
BseYI	CCCAGC	1 cut(s)	357
BsmI	GAATGC	2 cut(s)	176, 292
Bsp119I	TTCGAA	1 cut(s)	760
Bsp143I	GATC	4 cut(s)	37, 253, 372, 658
BspACI	CCGC	2 cut(s)	78, 332
BspCNI	CTCAG	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	681
BspMAI	CTGCAG	1 cut(s)	724
BspPI	GGATC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	760
BsrI	ACTGG	4 cut(s)	286, 617, 673, 720
BssMI	GATC	4 cut(s)	37, 253, 372, 658
BssSI	CACGAG	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	546
Bst4CI	ACNGT	3 cut(s)	32, 226, 398
Bst6I	CTCTTC	1 cut(s)	757
BstBI	TTCGAA	1 cut(s)	760
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	522
BstF5I	GGATG	2 cut(s)	661, 787
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	4 cut(s)	40, 256, 375, 661
BstMBI	GATC	4 cut(s)	37, 253, 372, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	749
BstSFI	CTRYAG	2 cut(s)	567, 720
BstV1I	GCAGC	2 cut(s)	706, 734
BstV2I	GAAGAC	2 cut(s)	105, 630
BstX2I	RGATCY	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	661, 787
BtsIMutI	CAGTG	3 cut(s)	102, 403, 680
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	698
CciI	TCATGA	1 cut(s)	681
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	222, 464
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	682
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	4 cut(s)	39, 255, 374, 660
DpnII	GATC	4 cut(s)	37, 253, 372, 658
Eam1104I	CTCTTC	1 cut(s)	757
EarI	CTCTTC	1 cut(s)	757
Eco47I	GGWCC	2 cut(s)	222, 464
Eco57I	CTGAAG	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	802
FaeI	CATG	1 cut(s)	685
FaiI	YATR	9 cut(s)	123, 165, 216, 231, 470, 504, 569, 683, 747
FatI	CATG	1 cut(s)	681
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	720, 723
FokI	GGATG	2 cut(s)	648, 794
Fsp4HI	GCNGC	2 cut(s)	720, 723
FspBI	CTAG	2 cut(s)	297, 542
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	720, 723
GsaI	CCCAGC	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	57
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	685
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	731
HindII	GTYRAC	1 cut(s)	731
HinfI	GANTC	4 cut(s)	326, 458, 497, 556
HphI	GGTGA	5 cut(s)	277, 321, 374, 551, 659
Hpy166II	GTNNAC	2 cut(s)	222, 731
Hpy188I	TCNGA	5 cut(s)	156, 349, 532, 694, 814
Hpy188III	TCNNGA	4 cut(s)	35, 449, 553, 682
Hpy8I	GTNNAC	2 cut(s)	222, 731
HpyAV	CCTTC	3 cut(s)	187, 537, 597
HpyCH4III	ACNGT	3 cut(s)	32, 226, 398
HpyCH4V	TGCA	4 cut(s)	176, 292, 722, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	749
HpyF3I	CTNAG	1 cut(s)	522
Hsp92II	CATG	1 cut(s)	685
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	37, 253, 372, 658
Lsp1109I	GCAGC	2 cut(s)	706, 734
MaeI	CTAG	2 cut(s)	297, 542
MaeIII	GTNAC	2 cut(s)	327, 647
MalI	GATC	4 cut(s)	39, 255, 374, 660
MboI	GATC	4 cut(s)	37, 253, 372, 658
MboII	GAAGA	5 cut(s)	110, 124, 464, 635, 774
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	6 cut(s)	10, 341, 365, 685, 755, 802
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	3 cut(s)	244, 618, 638
MroXI	GAANNNNTTC	1 cut(s)	806
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	3 cut(s)	217, 317, 399
Mva1269I	GAATGC	2 cut(s)	176, 292
MwoI	GCNNNNNNNGC	1 cut(s)	749
NdeII	GATC	4 cut(s)	37, 253, 372, 658
NlaIII	CATG	1 cut(s)	685
NmuCI	GTSAC	2 cut(s)	327, 647
NspV	TTCGAA	1 cut(s)	760
OliI	CACNNNNGTG	2 cut(s)	217, 317
PagI	TCATGA	1 cut(s)	681
PctI	GAATGC	2 cut(s)	176, 292
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	3 cut(s)	458, 497, 556
PkrI	GCNGC	2 cut(s)	721, 724
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	222, 464
PstI	CTGCAG	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	3 cut(s)	217, 317, 399
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	720, 723
Sau3AI	GATC	4 cut(s)	37, 253, 372, 658
Sau96I	GGNCC	2 cut(s)	222, 464
SchI	GAGTC	1 cut(s)	335
SfcI	CTRYAG	2 cut(s)	567, 720
SfuI	TTCGAA	1 cut(s)	760
SinI	GGWCC	2 cut(s)	222, 464
SmiMI	CAYNNNNRTG	3 cut(s)	217, 317, 399
Sse9I	AATT	6 cut(s)	10, 341, 365, 685, 755, 802
SsiI	CCGC	2 cut(s)	78, 332
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	2 cut(s)	297, 542
TaaI	ACNGT	3 cut(s)	32, 226, 398
TaqI	TCGA	3 cut(s)	96, 473, 760
TasI	AATT	6 cut(s)	10, 341, 365, 685, 755, 802
TfiI	GAWTC	3 cut(s)	458, 497, 556
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	3 cut(s)	109, 403, 680
TseFI	GTSAC	2 cut(s)	327, 647
TseI	GCWGC	2 cut(s)	719, 722
Tsp45I	GTSAC	2 cut(s)	327, 647
TspDTI	ATGAA	6 cut(s)	41, 110, 419, 471, 670, 698
TspRI	CASTG	3 cut(s)	109, 403, 680
VpaK11BI	GGWCC	2 cut(s)	222, 464
XapI	RAATTY	4 cut(s)	365, 685, 755, 802
XcmI	CCANNNNNNNNNTGG	2 cut(s)	253, 484
XmnI	GAANNNNTTC	1 cut(s)	806
XspI	CTAG	2 cut(s)	297, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.