Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017058

Physical Location & Seq

Genomic Coordinates Reverse (-)

25433341 .. 25439216

Gene Structure 5876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAGACAAATTGAAACACTCGTCGTATACGATAATACCTCGAATTGCAGGGGAGCTTCGAGACCCCGCAGTAGAGTCTGCAACTTCGCGCCAGAAACCCTAAACGAGAGAAGAGCTCTCATGAGCAATAATTCGTCTCCCGTAATGAACGGTCCAGATCAGCCTGACACAAGCGCGCCCGCGCCCAAACCACAGCGCACCAAGATCGTTAAACTCGAAGACACTGAAAAGAAGATTTTTCATAAGAAACTCAAAGATGTTGAGATTAGTGTTCCGATAGTGTATGGCAATATTGCATTCTGGCTCGGTAAGAAGGCAAGCGAGTACCAATCACATAAGTGGACTGTGTATGTTCGTGGGGCAACCAATGAGGATCTGGGAGTGGTGATAAAGCGTGTTGTTTTCCAGTTGCATTCCAGTTTCAATAATCCCACAAGGGTGGTTGAGTCACCGCCATTCGAGTTATCCGAATGTGGCTGGGGTGAATTTGAAATCGCAATTACACTATTTTTCCACAGTGATGTTTGCGAGAAGCCATTAAACTTATTTCATCATTTGAAGTTGTACCCCGAAGATGAATCTGGTCCTATGTCGACCAAGAAACCCGTGGTCGTGGAATCCTATGATGAGATTGTGCTCCCTGAGCCGTCAGAGAGTTTTTTAGCTCGCGTCCAGAATCACCCTGCTATAGCCTCCCCCAGATTACCTTCTGGTTTGACTCTGCCTCCTGTGCCAGTTGAAGATCCAAGTAAAAGAAAGAGAGGTGACACAAAAGATCATCCCCTGGCCCAGTGGTTCATGAATTTTTCAGAAGCTGATGAGCTTCTACAACTGGCTGCAGCTCGTCAGCAGGTTCAAGCTCATATTGCTAAATTTCGAAGAGAGATAAGTTCGATGGATGTGCAACAACAACAAGTGAATTCTGTCTCCGACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

312

Amino Acids

35.3

Weight (kDa)

6.77

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	110 - 189	1.8e-30	YEATS family
pYEATS	PF20305	113 - 173	6.4e-11	prokaryotic YEATS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45600 AT5G45600
fragaria_vesca	FvH4_2g10790
malus_domestica	MD10G1061200.v1.1
prunus_persica	Prupe.8G082000_v2.0.a1
pyrus_communis	pycom05g04440 pycom10g04710
rosa_chinensis	RchiOBHm_Chr6g0268561
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162700 Rh6BG166800 Rh6CG160500
rosa_wichuraiana	Rw0G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	841
AccI	GTMKAC	2 cut(s)	27, 593
AccII	CGCG	4 cut(s)	89, 176, 182, 669
AciI	CCGC	3 cut(s)	67, 180, 452
AclWI	GGATC	2 cut(s)	381, 737
AcsI	RAATTY	4 cut(s)	485, 802, 872, 919
AfaI	GTAC	2 cut(s)	326, 566
AgsI	TTSAA	6 cut(s)	14, 424, 491, 559, 740, 857
AjnI	CCWGG	1 cut(s)	783
AleI	CACNNNNGTG	2 cut(s)	337, 437
AluBI	AGCT	7 cut(s)	56, 116, 665, 815, 823, 842, 860
AluI	AGCT	7 cut(s)	56, 116, 665, 815, 823, 842, 860
Alw21I	GWGCWC	2 cut(s)	118, 639
Alw26I	GTCTC	3 cut(s)	55, 141, 931
AlwI	GGATC	2 cut(s)	381, 737
AlwNI	CAGNNNCTG	1 cut(s)	815
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	2 cut(s)	836, 839
ApoI	RAATTY	4 cut(s)	485, 802, 872, 919
AspLEI	GCGC	5 cut(s)	91, 176, 178, 184, 198
AspS9I	GGNCC	3 cut(s)	152, 584, 787
AsuHPI	GGTGA	5 cut(s)	397, 441, 494, 671, 776
AsuII	TTCGAA	1 cut(s)	877
AvaII	GGWCC	2 cut(s)	152, 584
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	118, 639
BbvI	GCAGC	2 cut(s)	823, 851
BccI	CCATC	1 cut(s)	889
BceAI	ACGGC	1 cut(s)	631
BcgI	CGANNNNNNTGC	4 cut(s)	187, 221, 883, 917
BciT130I	CCWGG	1 cut(s)	785
BcoDI	GTCTC	3 cut(s)	55, 141, 931
BfmI	CTRYAG	2 cut(s)	687, 837
BfuAI	ACCTGC	1 cut(s)	841
BisI	GCNGC	2 cut(s)	837, 840
BlsI	GCNGC	2 cut(s)	838, 841
Bme1390I	CCNGG	1 cut(s)	785
Bme18I	GGWCC	2 cut(s)	152, 584
BmgT120I	GGNCC	3 cut(s)	152, 584, 787
BmrFI	CCNGG	1 cut(s)	785
BmrI	ACTGGG	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
Bpu10I	CCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	1 cut(s)	877
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	606, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bse1I	ACTGG	6 cut(s)	406, 417, 734, 790, 837, 934
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	2 cut(s)	606, 783
BseGI	GGATG	2 cut(s)	778, 904
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	6 cut(s)	406, 417, 734, 790, 837, 934
BsePI	GCGCGC	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	823, 851
BseYI	CCCAGC	1 cut(s)	477
Bsh1236I	CGCG	4 cut(s)	89, 176, 182, 669
BshFI	GGCC	1 cut(s)	788
BsiHKAI	GWGCWC	2 cut(s)	118, 639
BsmAI	GTCTC	3 cut(s)	55, 141, 931
BsmBI	CGTCTC	1 cut(s)	141
BsmI	GAATGC	2 cut(s)	296, 412
BsnI	GGCC	1 cut(s)	788
Bso31I	GGTCTC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	877
Bsp1286I	GDGCHC	2 cut(s)	118, 639
Bsp143I	GATC	5 cut(s)	157, 204, 373, 742, 775
BspACI	CCGC	3 cut(s)	67, 180, 452
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	4 cut(s)	89, 176, 182, 669
BspHI	TCATGA	2 cut(s)	120, 798
BspMAI	CTGCAG	1 cut(s)	841
BspMI	ACCTGC	1 cut(s)	841
BspPI	GGATC	2 cut(s)	381, 737
BspQI	GCTCTTC	1 cut(s)	106
BspT104I	TTCGAA	1 cut(s)	877
BspTNI	GGTCTC	1 cut(s)	55
BsrI	ACTGG	6 cut(s)	406, 417, 734, 790, 837, 934
BssECI	CCNNGG	2 cut(s)	606, 783
BssHII	GCGCGC	1 cut(s)	174
BssMI	GATC	5 cut(s)	157, 204, 373, 742, 775
BssNAI	GTATAC	1 cut(s)	28
Bst1107I	GTATAC	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	3 cut(s)	152, 346, 518
Bst6I	CTCTTC	2 cut(s)	106, 874
BstBI	TTCGAA	1 cut(s)	877
BstC8I	GCNNGC	4 cut(s)	176, 180, 319, 667
BstDEI	CTNAG	1 cut(s)	642
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	778, 904
BstFNI	CGCG	4 cut(s)	89, 176, 182, 669
BstHHI	GCGC	5 cut(s)	91, 176, 178, 184, 198
BstKTI	GATC	5 cut(s)	160, 207, 376, 745, 778
BstMAI	GTCTC	3 cut(s)	55, 141, 931
BstMBI	GATC	5 cut(s)	157, 204, 373, 742, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	643, 730, 866
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	783
BstSFI	CTRYAG	2 cut(s)	687, 837
BstUI	CGCG	4 cut(s)	89, 176, 182, 669
BstV1I	GCAGC	2 cut(s)	823, 851
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	2 cut(s)	373, 742
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	2 cut(s)	373, 742
BstZ17I	GTATAC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	788
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	778, 904
BtsIMutI	CAGTG	3 cut(s)	222, 523, 797
BveI	ACCTGC	1 cut(s)	841
Cac8I	GCNNGC	4 cut(s)	176, 180, 319, 667
CaiI	CAGNNNCTG	1 cut(s)	815
CciI	TCATGA	2 cut(s)	120, 798
CfoI	GCGC	5 cut(s)	91, 176, 178, 184, 198
Cfr13I	GGNCC	3 cut(s)	152, 584, 787
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	2 cut(s)	325, 565
CviAII	CATG	2 cut(s)	121, 799
CviQI	GTAC	2 cut(s)	325, 565
DdeI	CTNAG	1 cut(s)	642
DpnI	GATC	5 cut(s)	159, 206, 375, 744, 777
DpnII	GATC	5 cut(s)	157, 204, 373, 742, 775
Eam1104I	CTCTTC	2 cut(s)	106, 874
EarI	CTCTTC	2 cut(s)	106, 874
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	152, 584
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	919
EcoRII	CCWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	2 cut(s)	124, 802
FatI	CATG	2 cut(s)	120, 798
FauI	CCCGC	2 cut(s)	74, 187
FblI	GTMKAC	2 cut(s)	27, 593
Fnu4HI	GCNGC	2 cut(s)	837, 840
FokI	GGATG	2 cut(s)	765, 911
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	837, 840
GlaI	GCGC	5 cut(s)	90, 175, 177, 183, 197
GluI	GCNGC	2 cut(s)	837, 840
GsaI	CCCAGC	1 cut(s)	481
HaeIII	GGCC	1 cut(s)	788
HgaI	GACGC	1 cut(s)	658
HhaI	GCGC	5 cut(s)	91, 176, 178, 184, 198
Hin1II	CATG	2 cut(s)	124, 802
Hin6I	GCGC	5 cut(s)	89, 174, 176, 182, 196
HinP1I	GCGC	5 cut(s)	89, 174, 176, 182, 196
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HinfI	GANTC	6 cut(s)	75, 446, 578, 617, 676, 718
HphI	GGTGA	5 cut(s)	397, 441, 494, 671, 776
Hpy166II	GTNNAC	3 cut(s)	28, 342, 594
Hpy188I	TCNGA	5 cut(s)	276, 469, 652, 811, 931
Hpy188III	TCNNGA	5 cut(s)	60, 121, 155, 673, 799
Hpy8I	GTNNAC	3 cut(s)	28, 342, 594
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	307, 717
HpyCH4III	ACNGT	3 cut(s)	152, 346, 518
HpyCH4V	TGCA	6 cut(s)	48, 81, 296, 412, 839, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	643, 730, 866
HpyF3I	CTNAG	1 cut(s)	642
Hsp92II	CATG	2 cut(s)	124, 802
HspAI	GCGC	5 cut(s)	89, 174, 176, 182, 196
Kzo9I	GATC	5 cut(s)	157, 204, 373, 742, 775
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	53, 642
Lsp1109I	GCAGC	2 cut(s)	823, 851
MaeIII	GTNAC	2 cut(s)	447, 764
MalI	GATC	5 cut(s)	159, 206, 375, 744, 777
MboI	GATC	5 cut(s)	157, 204, 373, 742, 775
MboII	GAAGA	6 cut(s)	123, 230, 244, 584, 752, 891
MflI	RGATCY	2 cut(s)	373, 742
MhlI	GDGCHC	2 cut(s)	118, 639
MluCI	AATT	8 cut(s)	9, 43, 130, 485, 498, 802, 872, 919
MlyI	GAGTC	3 cut(s)	84, 455, 712
MnlI	CCTC	5 cut(s)	49, 364, 703, 735, 755
MseI	TTAA	2 cut(s)	210, 539
MslI	CAYNNNNRTG	3 cut(s)	337, 437, 519
MspR9I	CCNGG	1 cut(s)	785
Mva1269I	GAATGC	2 cut(s)	296, 412
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	4 cut(s)	89, 176, 182, 669
MwoI	GCNNNNNNNGC	3 cut(s)	643, 730, 866
NdeII	GATC	5 cut(s)	157, 204, 373, 742, 775
NlaIII	CATG	2 cut(s)	124, 802
NmuCI	GTSAC	2 cut(s)	447, 764
NspV	TTCGAA	1 cut(s)	877
OliI	CACNNNNGTG	2 cut(s)	337, 437
PagI	TCATGA	2 cut(s)	120, 798
PauI	GCGCGC	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 213, 465
PctI	GAATGC	2 cut(s)	296, 412
PfeI	GAWTC	3 cut(s)	578, 617, 676
PkrI	GCNGC	2 cut(s)	838, 841
PleI	GAGTC	3 cut(s)	83, 454, 712
PpsI	GAGTC	3 cut(s)	83, 454, 712
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	783
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	783
PspPI	GGNCC	3 cut(s)	152, 584, 787
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	1 cut(s)	815
PsuI	RGATCY	2 cut(s)	373, 742
PteI	GCGCGC	1 cut(s)	174
RsaI	GTAC	2 cut(s)	326, 566
RsaNI	GTAC	2 cut(s)	325, 565
RseI	CAYNNNNRTG	3 cut(s)	337, 437, 519
SacI	GAGCTC	1 cut(s)	118
SalI	GTCGAC	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	210, 539
SatI	GCNGC	2 cut(s)	837, 840
Sau3AI	GATC	5 cut(s)	157, 204, 373, 742, 775
Sau96I	GGNCC	3 cut(s)	152, 584, 787
SchI	GAGTC	3 cut(s)	84, 455, 712
ScrFI	CCNGG	1 cut(s)	785
SduI	GDGCHC	2 cut(s)	118, 639
SfcI	CTRYAG	2 cut(s)	687, 837
SfuI	TTCGAA	1 cut(s)	877
SinI	GGWCC	2 cut(s)	152, 584
SmiMI	CAYNNNNRTG	3 cut(s)	337, 437, 519
Sse9I	AATT	8 cut(s)	9, 43, 130, 485, 498, 802, 872, 919
SsiI	CCGC	3 cut(s)	67, 180, 452
SspI	AATATT	1 cut(s)	292
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	783
TaaI	ACNGT	3 cut(s)	152, 346, 518
TaqI	TCGA	7 cut(s)	41, 59, 216, 459, 593, 877, 893
TasI	AATT	8 cut(s)	9, 43, 130, 485, 498, 802, 872, 919
TfiI	GAWTC	3 cut(s)	578, 617, 676
Tru1I	TTAA	2 cut(s)	210, 539
Tru9I	TTAA	2 cut(s)	210, 539
TscAI	CASTG	3 cut(s)	229, 523, 797
TseFI	GTSAC	2 cut(s)	447, 764
TseI	GCWGC	2 cut(s)	836, 839
Tsp45I	GTSAC	2 cut(s)	447, 764
TspDTI	ATGAA	6 cut(s)	161, 230, 539, 591, 787, 815
TspRI	CASTG	3 cut(s)	229, 523, 797
VpaK11BI	GGWCC	2 cut(s)	152, 584
XapI	RAATTY	4 cut(s)	485, 802, 872, 919
XcmI	CCANNNNNNNNNTGG	2 cut(s)	373, 604
XmiI	GTMKAC	2 cut(s)	27, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.