Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017058

Physical Location & Seq

Genomic Coordinates Reverse (-)

27012160 .. 27016350

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG166800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGCAATGATTCATCTTCCGTAATGAATGGTCCAGATCAGCCTGACGCAAGCGCGCCCGCGCCCAAACCACGGCGCACCAAGATCGTTAAACTCGAAGACACTGAAAAGAAGATTTTTCATAAGAAACTCAAAGATGTTGAGATTAGTGTTCCGATAGTGTATGGCAATATTGCATTCTGGCTCGGTAAGAAGGCAAGCGAGTACCAATCACATAAGTGGACTGTGTATGTTCGTGGGGCAACCAATGAGGATCTGGGAGTGGTGATAAAGCGTGTTGTTTTCCAGTTGCATTCCAGTTTCAATAATCCCACAAGGGTGGTTGAGTCACCGCCATTTGAGTTATCCGAATGTGGCTGGGGTGAATTTGAAATCGCCATTACACTATTTTTCCACAGTGATGTTTGCGAGAAGCCATTAAACTTATTTCATCATTTGAAGTTGTACCCAGAAGATGAATCTGGTCCTATGTCGACCAAGAAACCCGTGGTCGTGGAATCCTATGATGAGATTGTGTTCCCTGAGCCTTCAGAGAGTTTTTTAGCTCGCATCCAGAATCACCCTGCTATAACCTCCCCCAGATTACCTTCTGGTTTGACTCTGCCTCCTGTGCCGGTTGAAGATCCAAGTAAAAGAAAGAGAGGTGACACAAAAGATCATCCCCTGGCCCAGTGGTTCATGAATTTTTCAGAAGCTGATGAGCTTCTACAACTGGCTGCAGCTCGTCAGCAGGTTCAAGCTCATATTGCTAAATTTCGAAGAGAGATAAGTTCGATGGATGTGCAACAACAACAAGTGAATTCTGTCTCCGACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

272

Amino Acids

30.76

Weight (kDa)

6.15

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	70 - 149	1.4e-30	YEATS family
pYEATS	PF20305	73 - 133	5e-11	prokaryotic YEATS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45600 AT5G45600
fragaria_vesca	FvH4_2g10790
malus_domestica	MD10G1061200.v1.1
prunus_persica	Prupe.8G082000_v2.0.a1
pyrus_communis	pycom05g04440 pycom10g04710
rosa_chinensis	RchiOBHm_Chr6g0268561
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162700 Rh6BG166800 Rh6CG160500
rosa_wichuraiana	Rw0G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	721
AccI	GTMKAC	1 cut(s)	473
AccII	CGCG	2 cut(s)	56, 62
AciI	CCGC	2 cut(s)	60, 332
AclWI	GGATC	2 cut(s)	261, 617
AcsI	RAATTY	4 cut(s)	365, 682, 752, 799
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	2 cut(s)	206, 446
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	5 cut(s)	304, 371, 439, 620, 737
AjnI	CCWGG	1 cut(s)	663
AleI	CACNNNNGTG	2 cut(s)	217, 317
AluBI	AGCT	5 cut(s)	545, 695, 703, 722, 740
AluI	AGCT	5 cut(s)	545, 695, 703, 722, 740
Alw26I	GTCTC	1 cut(s)	811
AlwI	GGATC	2 cut(s)	261, 617
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	1 cut(s)	666
ApeKI	GCWGC	2 cut(s)	716, 719
ApoI	RAATTY	4 cut(s)	365, 682, 752, 799
AspLEI	GCGC	4 cut(s)	56, 58, 64, 78
AspS9I	GGNCC	3 cut(s)	32, 464, 667
AsuHPI	GGTGA	5 cut(s)	277, 321, 374, 551, 656
AsuII	TTCGAA	1 cut(s)	757
AvaII	GGWCC	2 cut(s)	32, 464
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	703, 731
BccI	CCATC	1 cut(s)	769
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 763, 797
BciT130I	CCWGG	1 cut(s)	665
BcoDI	GTCTC	1 cut(s)	811
BfmI	CTRYAG	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	721
BisI	GCNGC	2 cut(s)	717, 720
BlsI	GCNGC	2 cut(s)	718, 721
Bme1390I	CCNGG	1 cut(s)	665
Bme18I	GGWCC	2 cut(s)	32, 464
BmgT120I	GGNCC	3 cut(s)	32, 464, 667
BmrFI	CCNGG	1 cut(s)	665
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	757
BsaJI	CCNNGG	3 cut(s)	71, 486, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	5 cut(s)	286, 297, 670, 717, 814
Bse3DI	GCAATG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	3 cut(s)	71, 486, 663
BseGI	GGATG	3 cut(s)	549, 658, 784
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	5 cut(s)	286, 297, 670, 717, 814
BsePI	GCGCGC	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	703, 731
BseYI	CCCAGC	1 cut(s)	357
Bsh1236I	CGCG	2 cut(s)	56, 62
BshFI	GGCC	1 cut(s)	668
BsiSI	CCGG	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	811
BsmI	GAATGC	2 cut(s)	176, 292
BsnI	GGCC	1 cut(s)	668
Bsp119I	TTCGAA	1 cut(s)	757
Bsp143I	GATC	5 cut(s)	37, 84, 253, 622, 655
BspACI	CCGC	2 cut(s)	60, 332
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	2 cut(s)	56, 62
BspHI	TCATGA	1 cut(s)	678
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	721
BspPI	GGATC	2 cut(s)	261, 617
BspT104I	TTCGAA	1 cut(s)	757
BsrDI	GCAATG	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	5 cut(s)	286, 297, 670, 717, 814
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	3 cut(s)	71, 486, 663
BssHII	GCGCGC	1 cut(s)	54
BssMI	GATC	5 cut(s)	37, 84, 253, 622, 655
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	226, 398
Bst6I	CTCTTC	1 cut(s)	754
BstBI	TTCGAA	1 cut(s)	757
BstC8I	GCNNGC	5 cut(s)	52, 56, 60, 199, 547
BstDEI	CTNAG	1 cut(s)	522
BstDSI	CCRYGG	2 cut(s)	71, 486
BstF5I	GGATG	3 cut(s)	549, 658, 784
BstFNI	CGCG	2 cut(s)	56, 62
BstHHI	GCGC	4 cut(s)	56, 58, 64, 78
BstKTI	GATC	5 cut(s)	40, 87, 256, 625, 658
BstMAI	GTCTC	1 cut(s)	811
BstMBI	GATC	5 cut(s)	37, 84, 253, 622, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	610, 746
BstNI	CCWGG	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	663
BstSFI	CTRYAG	1 cut(s)	717
BstUI	CGCG	2 cut(s)	56, 62
BstV1I	GCAGC	2 cut(s)	703, 731
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	253, 622
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	253, 622
BsuRI	GGCC	1 cut(s)	668
BtgI	CCRYGG	2 cut(s)	71, 486
BtsCI	GGATG	3 cut(s)	549, 658, 784
BtsIMutI	CAGTG	3 cut(s)	102, 403, 677
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	5 cut(s)	52, 56, 60, 199, 547
CaiI	CAGNNNCTG	1 cut(s)	695
CciI	TCATGA	1 cut(s)	678
CfoI	GCGC	4 cut(s)	56, 58, 64, 78
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	3 cut(s)	32, 464, 667
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	205, 445
CviAII	CATG	1 cut(s)	679
CviQI	GTAC	2 cut(s)	205, 445
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	5 cut(s)	39, 86, 255, 624, 657
DpnII	GATC	5 cut(s)	37, 84, 253, 622, 655
Eam1104I	CTCTTC	1 cut(s)	754
EarI	CTCTTC	1 cut(s)	754
Eco47I	GGWCC	2 cut(s)	32, 464
Eco57I	CTGAAG	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	799
EcoRII	CCWGG	1 cut(s)	663
FaeI	CATG	1 cut(s)	682
FaiI	YATR	9 cut(s)	123, 165, 216, 231, 470, 504, 569, 680, 744
FatI	CATG	1 cut(s)	678
FauI	CCCGC	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	717, 720
FokI	GGATG	3 cut(s)	536, 645, 791
Fsp4HI	GCNGC	2 cut(s)	717, 720
GlaI	GCGC	4 cut(s)	55, 57, 63, 77
GluI	GCNGC	2 cut(s)	717, 720
GsaI	CCCAGC	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	668
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	4 cut(s)	56, 58, 64, 78
Hin1II	CATG	1 cut(s)	682
Hin6I	GCGC	4 cut(s)	54, 56, 62, 76
HinP1I	GCGC	4 cut(s)	54, 56, 62, 76
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HinfI	GANTC	6 cut(s)	11, 326, 458, 497, 556, 598
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	5 cut(s)	277, 321, 374, 551, 656
Hpy166II	GTNNAC	2 cut(s)	222, 474
Hpy188I	TCNGA	5 cut(s)	156, 349, 532, 691, 811
Hpy188III	TCNNGA	3 cut(s)	35, 553, 679
Hpy8I	GTNNAC	2 cut(s)	222, 474
HpyAV	CCTTC	3 cut(s)	187, 537, 597
HpyCH4III	ACNGT	2 cut(s)	226, 398
HpyCH4V	TGCA	4 cut(s)	176, 292, 719, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	610, 746
HpyF3I	CTNAG	1 cut(s)	522
Hsp92II	CATG	1 cut(s)	682
HspAI	GCGC	4 cut(s)	54, 56, 62, 76
Kzo9I	GATC	5 cut(s)	37, 84, 253, 622, 655
Lsp1109I	GCAGC	2 cut(s)	703, 731
LweI	GCATC	1 cut(s)	558
MaeIII	GTNAC	2 cut(s)	327, 644
MalI	GATC	5 cut(s)	39, 86, 255, 624, 657
MboI	GATC	5 cut(s)	37, 84, 253, 622, 655
MboII	GAAGA	6 cut(s)	9, 110, 124, 464, 632, 771
MflI	RGATCY	2 cut(s)	253, 622
MluCI	AATT	4 cut(s)	365, 682, 752, 799
MlyI	GAGTC	2 cut(s)	335, 592
MnlI	CCTC	4 cut(s)	244, 583, 615, 635
MseI	TTAA	2 cut(s)	90, 419
MslI	CAYNNNNRTG	3 cut(s)	217, 317, 399
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	665
Mva1269I	GAATGC	2 cut(s)	176, 292
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	2 cut(s)	56, 62
MwoI	GCNNNNNNNGC	2 cut(s)	610, 746
NdeII	GATC	5 cut(s)	37, 84, 253, 622, 655
NlaIII	CATG	1 cut(s)	682
NmuCI	GTSAC	2 cut(s)	327, 644
NspV	TTCGAA	1 cut(s)	757
OliI	CACNNNNGTG	2 cut(s)	217, 317
PagI	TCATGA	1 cut(s)	678
PauI	GCGCGC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	2 cut(s)	176, 292
PfeI	GAWTC	4 cut(s)	11, 458, 497, 556
PkrI	GCNGC	2 cut(s)	718, 721
PleI	GAGTC	2 cut(s)	334, 592
PpsI	GAGTC	2 cut(s)	334, 592
Psp6I	CCWGG	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	663
PspPI	GGNCC	3 cut(s)	32, 464, 667
PstI	CTGCAG	1 cut(s)	721
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	253, 622
PteI	GCGCGC	1 cut(s)	54
RsaI	GTAC	2 cut(s)	206, 446
RsaNI	GTAC	2 cut(s)	205, 445
RseI	CAYNNNNRTG	3 cut(s)	217, 317, 399
SalI	GTCGAC	1 cut(s)	472
SaqAI	TTAA	2 cut(s)	90, 419
SatI	GCNGC	2 cut(s)	717, 720
Sau3AI	GATC	5 cut(s)	37, 84, 253, 622, 655
Sau96I	GGNCC	3 cut(s)	32, 464, 667
SchI	GAGTC	2 cut(s)	335, 592
ScrFI	CCNGG	1 cut(s)	665
SetI	ASST	9 cut(s)	547, 575, 589, 646, 697, 705, 724, 735, 742
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	1 cut(s)	717
SfuI	TTCGAA	1 cut(s)	757
SinI	GGWCC	2 cut(s)	32, 464
SmiMI	CAYNNNNRTG	3 cut(s)	217, 317, 399
Sse9I	AATT	4 cut(s)	365, 682, 752, 799
SsiI	CCGC	2 cut(s)	60, 332
SspI	AATATT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	226, 398
TaqI	TCGA	4 cut(s)	96, 473, 757, 773
TasI	AATT	4 cut(s)	365, 682, 752, 799
TfiI	GAWTC	4 cut(s)	11, 458, 497, 556
Tru1I	TTAA	2 cut(s)	90, 419
Tru9I	TTAA	2 cut(s)	90, 419
TscAI	CASTG	3 cut(s)	109, 403, 677
TseFI	GTSAC	2 cut(s)	327, 644
TseI	GCWGC	2 cut(s)	716, 719
Tsp45I	GTSAC	2 cut(s)	327, 644
TspDTI	ATGAA	6 cut(s)	41, 110, 419, 471, 667, 695
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	3 cut(s)	109, 403, 677
VpaK11BI	GGWCC	2 cut(s)	32, 464
XapI	RAATTY	4 cut(s)	365, 682, 752, 799
XcmI	CCANNNNNNNNNTGG	2 cut(s)	253, 484
XmiI	GTMKAC	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.