Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0017058

Physical Location & Seq

Genomic Coordinates Forward (+)

4935332 .. 4939454

Gene Structure 4123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04710.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAACAATAGTTCCTCTTCCACAATACACGGTCCAGATCAACCTGAAATAAGTGGGCCTGCGCCTGCGCCTAAATCTCTGCGCACGAAAATGGGCAAACCGGAAGACAGTGAAAAGAAGATTTTTCATAAGAAACTCAAAGATGTTGAGATTAGTGTTCCGATAGTGTATGGCAATATTGCATTCTGGCTCGGTAAGAAGGCGAACGAGTACCAATCACACAAGTGGACTGTGTACGTTCGTGGGGCAACCAATGAGGATCTTGGAGTGGTGATAAAACGTGCTGTTTTTCAGCTGCATTCCAGTTTCAATAATCCCACAAGGGTGGTTGAGTCACCACCATTTGAATTGTCAGAATGTGGCTGGGGTGAATTTGAAATCGCCATTACGCTTTTCTTCCACAGTGATGTTTGTGATAAGCCATTAAACTTATTTCATCATTTGAAGTTGTACCCAGCGGATGAGTCCGGTCCTATGTCGACTAAAAAGCCTGTTGTTGTGGAATCATATGATGACATTGTGTTCCCTGAGCCTTCAGAGGCATTCTTAGCTCGTGTGCAGAATCAGCCAGCTGTAGTCGTTCCCAGACTACCTGCTGGTGCTGCTTTGCCTCCTCCTGTGCCAGTTGAGGATCCAAGTAACAGAAAGAGAGCGGACACTAAAGATCATCCCCTATGCCAGTGGTTCACGAACTTTTCAGAAGCAGATGAGCTGTTACGACTTGCAACAGCTCGTCAGCAGGTTCAAACTCATATTGCTAAATTTCGAAGAGAGATAACTCTGCTAGAGGGGCAGCATCAACAAGTGAATTCTGTCTCCGACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

276

Amino Acids

30.84

Weight (kDa)

6.37

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45600 AT5G45600
fragaria_vesca	FvH4_2g10790
malus_domestica	MD10G1061200.v1.1
prunus_persica	Prupe.8G082000_v2.0.a1
pyrus_communis	pycom05g04440 pycom10g04710
rosa_chinensis	RchiOBHm_Chr6g0268561
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162700 Rh6BG166800 Rh6CG160500
rosa_wichuraiana	Rw0G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	83
Acc36I	ACCTGC	2 cut(s)	601, 730
AccBSI	CCGCTC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	479
AciI	CCGC	2 cut(s)	458, 653
AclWI	GGATC	3 cut(s)	267, 626, 639
AcsI	RAATTY	3 cut(s)	371, 761, 808
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	3 cut(s)	212, 236, 452
AgsI	TTSAA	5 cut(s)	310, 347, 377, 445, 746
AleI	CACNNNNGTG	2 cut(s)	223, 323
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	5 cut(s)	295, 551, 572, 712, 731
AluI	AGCT	5 cut(s)	295, 551, 572, 712, 731
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	3 cut(s)	267, 626, 639
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	3 cut(s)	295, 602, 793
ApoI	RAATTY	3 cut(s)	371, 761, 808
AspLEI	GCGC	3 cut(s)	64, 70, 84
AspS9I	GGNCC	3 cut(s)	32, 56, 470
AsuHPI	GGTGA	3 cut(s)	283, 327, 380
AsuII	TTCGAA	1 cut(s)	766
AvaII	GGWCC	2 cut(s)	32, 470
BamHI	GGATCC	1 cut(s)	631
BauI	CACGAG	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	282, 589, 805
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	1 cut(s)	573
BfuAI	ACCTGC	2 cut(s)	601, 730
BisI	GCNGC	3 cut(s)	296, 603, 794
BlsI	GCNGC	3 cut(s)	297, 604, 795
Bme18I	GGWCC	2 cut(s)	32, 470
BmgT120I	GGNCC	3 cut(s)	32, 56, 470
BmiI	GGNNCC	1 cut(s)	633
BmsI	GCATC	1 cut(s)	805
BpiI	GAAGAC	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	766
BsaWI	WCCGGW	2 cut(s)	100, 467
Bse1I	ACTGG	4 cut(s)	303, 623, 679, 823
BseGI	GGATG	2 cut(s)	466, 667
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	4 cut(s)	303, 623, 679, 823
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	3 cut(s)	282, 589, 805
BseYI	CCCAGC	2 cut(s)	363, 454
BsgI	GTGCAG	1 cut(s)	578
BshFI	GGCC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	101, 468
BsmAI	GTCTC	1 cut(s)	820
BsmI	GAATGC	3 cut(s)	182, 298, 542
BsnI	GGCC	1 cut(s)	58
Bsp119I	TTCGAA	1 cut(s)	766
Bsp143I	GATC	4 cut(s)	37, 259, 631, 664
BspACI	CCGC	2 cut(s)	458, 653
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	633
BspMI	ACCTGC	2 cut(s)	601, 730
BspPI	GGATC	3 cut(s)	267, 626, 639
BspT104I	TTCGAA	1 cut(s)	766
BsrBI	CCGCTC	1 cut(s)	653
BsrI	ACTGG	4 cut(s)	303, 623, 679, 823
BssMI	GATC	4 cut(s)	37, 259, 631, 664
BssSI	CACGAG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	552
Bst4CI	ACNGT	4 cut(s)	32, 110, 232, 404
Bst6I	CTCTTC	2 cut(s)	22, 763
BstBI	TTCGAA	1 cut(s)	766
BstC8I	GCNNGC	3 cut(s)	60, 66, 570
BstDEI	CTNAG	2 cut(s)	528, 547
BstF5I	GGATG	2 cut(s)	466, 667
BstHHI	GCGC	3 cut(s)	64, 70, 84
BstKTI	GATC	4 cut(s)	40, 262, 634, 667
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	4 cut(s)	37, 259, 631, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	548, 565, 602, 790
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	3 cut(s)	282, 589, 805
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	259, 631
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	2 cut(s)	259, 631
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	466, 667
BtsIMutI	CAGTG	3 cut(s)	115, 409, 686
BveI	ACCTGC	2 cut(s)	601, 730
Cac8I	GCNNGC	3 cut(s)	60, 66, 570
CfoI	GCGC	3 cut(s)	64, 70, 84
Cfr13I	GGNCC	3 cut(s)	32, 56, 470
Csp6I	GTAC	3 cut(s)	211, 235, 451
CviQI	GTAC	3 cut(s)	211, 235, 451
DdeI	CTNAG	2 cut(s)	528, 547
DpnI	GATC	4 cut(s)	39, 261, 633, 666
DpnII	GATC	4 cut(s)	37, 259, 631, 664
Eam1104I	CTCTTC	2 cut(s)	22, 763
EarI	CTCTTC	2 cut(s)	22, 763
Eco47I	GGWCC	2 cut(s)	32, 470
Eco57I	CTGAAG	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	808
FaiI	YATR	7 cut(s)	129, 171, 476, 508, 510, 676, 753
FauNDI	CATATG	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	3 cut(s)	296, 603, 794
FokI	GGATG	2 cut(s)	473, 654
Fsp4HI	GCNGC	3 cut(s)	296, 603, 794
FspBI	CTAG	1 cut(s)	785
FspI	TGCGCA	1 cut(s)	83
GlaI	GCGC	3 cut(s)	63, 69, 83
GluI	GCNGC	3 cut(s)	296, 603, 794
GsaI	CCCAGC	2 cut(s)	367, 458
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	2 cut(s)	101, 468
HhaI	GCGC	3 cut(s)	64, 70, 84
Hin6I	GCGC	3 cut(s)	62, 68, 82
HinP1I	GCGC	3 cut(s)	62, 68, 82
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	4 cut(s)	332, 464, 503, 562
HpaII	CCGG	2 cut(s)	101, 468
HphI	GGTGA	3 cut(s)	283, 327, 380
Hpy166II	GTNNAC	4 cut(s)	228, 235, 480, 687
Hpy188I	TCNGA	5 cut(s)	162, 355, 538, 700, 820
Hpy188III	TCNNGA	2 cut(s)	35, 688
Hpy8I	GTNNAC	4 cut(s)	228, 235, 480, 687
HpyAV	CCTTC	2 cut(s)	193, 543
HpyCH4III	ACNGT	4 cut(s)	32, 110, 232, 404
HpyCH4IV	ACGT	2 cut(s)	237, 280
HpyCH4V	TGCA	4 cut(s)	182, 298, 559, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	548, 565, 602, 790
HpyF3I	CTNAG	2 cut(s)	528, 547
HpySE526I	ACGT	2 cut(s)	237, 280
HspAI	GCGC	3 cut(s)	62, 68, 82
Kzo9I	GATC	4 cut(s)	37, 259, 631, 664
Lsp1109I	GCAGC	3 cut(s)	282, 589, 805
LweI	GCATC	1 cut(s)	805
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	2 cut(s)	237, 280
MaeIII	GTNAC	3 cut(s)	333, 638, 714
MalI	GATC	4 cut(s)	39, 261, 633, 666
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	4 cut(s)	37, 259, 631, 664
MboII	GAAGA	5 cut(s)	9, 116, 130, 388, 780
MflI	RGATCY	2 cut(s)	259, 631
MluCI	AATT	4 cut(s)	347, 371, 761, 808
MlyI	GAGTC	2 cut(s)	341, 473
MnlI	CCTC	7 cut(s)	25, 250, 532, 621, 622, 624, 781
MseI	TTAA	1 cut(s)	425
MslI	CAYNNNNRTG	4 cut(s)	89, 223, 323, 405
MspA1I	CMGCKG	3 cut(s)	295, 458, 572
MspI	CCGG	2 cut(s)	101, 468
Mva1269I	GAATGC	3 cut(s)	182, 298, 542
MwoI	GCNNNNNNNGC	4 cut(s)	548, 565, 602, 790
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	4 cut(s)	37, 259, 631, 664
NlaIV	GGNNCC	1 cut(s)	633
NmuCI	GTSAC	1 cut(s)	333
NsbI	TGCGCA	1 cut(s)	83
NspV	TTCGAA	1 cut(s)	766
OliI	CACNNNNGTG	2 cut(s)	223, 323
PctI	GAATGC	3 cut(s)	182, 298, 542
PfeI	GAWTC	2 cut(s)	503, 562
PkrI	GCNGC	3 cut(s)	297, 604, 795
PleI	GAGTC	2 cut(s)	340, 472
PpsI	GAGTC	2 cut(s)	340, 472
PspFI	CCCAGC	2 cut(s)	363, 454
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	3 cut(s)	32, 56, 470
PsuI	RGATCY	2 cut(s)	259, 631
PvuII	CAGCTG	2 cut(s)	295, 572
RsaI	GTAC	3 cut(s)	212, 236, 452
RsaNI	GTAC	3 cut(s)	211, 235, 451
RseI	CAYNNNNRTG	4 cut(s)	89, 223, 323, 405
SalI	GTCGAC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	3 cut(s)	296, 603, 794
Sau3AI	GATC	4 cut(s)	37, 259, 631, 664
Sau96I	GGNCC	3 cut(s)	32, 56, 470
SchI	GAGTC	2 cut(s)	341, 473
SfaNI	GCATC	1 cut(s)	805
SfcI	CTRYAG	1 cut(s)	573
SfuI	TTCGAA	1 cut(s)	766
SinI	GGWCC	2 cut(s)	32, 470
SmiMI	CAYNNNNRTG	4 cut(s)	89, 223, 323, 405
Sse9I	AATT	4 cut(s)	347, 371, 761, 808
SsiI	CCGC	2 cut(s)	458, 653
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	785
TaaI	ACNGT	4 cut(s)	32, 110, 232, 404
TaiI	ACGT	2 cut(s)	240, 283
TaqI	TCGA	2 cut(s)	479, 766
TasI	AATT	4 cut(s)	347, 371, 761, 808
TfiI	GAWTC	2 cut(s)	503, 562
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TscAI	CASTG	3 cut(s)	115, 409, 686
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	3 cut(s)	295, 602, 793
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	3 cut(s)	17, 116, 425
TspRI	CASTG	3 cut(s)	115, 409, 686
VpaK11BI	GGWCC	2 cut(s)	32, 470
XapI	RAATTY	3 cut(s)	371, 761, 808
XmiI	GTMKAC	1 cut(s)	479
XspI	CTAG	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.