Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004842

Physical Location & Seq

Genomic Coordinates Reverse (-)

5531067 .. 5534492

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0043200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTCAGAGTTTCAGGAGCAAAGGAAACCACCGAAGCCTCCTTCAAAAGTAGAGGCGGAGTTGGACAAAATTAGCAACTTACCAAGTGATGTTATAGATATTATTTTGGAACATCTGTCGATCAAGGAGGCAGTGAGGACAAGTATTTTATCAACGAAGTGGAGGTACAAATCGGCCATGCTTCAAAATCTTAAGTTTGATGAGCAGTGTGTTTCAACTCAAAATCCTCTGATCACCTTTGCAAACATTGTTGATCAAGTACTCTTACTGCACATTGGCCCCATACGCAAGTTCAAGCTTTCTCATCGAGATCTTCTAGCCACTGCTGATATTGATAGATGGGTTCTTCATATATCAAGAAGCTCTGTCAAACAATTGATACTTGAACTCGGGAATGGTCAGCGCTACAACTTGCCTTCATGTTTGTTTTCTTGTGAAGACATAATCTGTTTGCGCTTGCATAATTGTATTCTAAAACTTCCATCAACTTTCATTGGCTTCAAGAGTTTGAAGCGTCTTAACATTGAGCGTGTTACATTGACCCAAAATGTGTTTGAAGATGTCATAGTTCATTGTCCTATGCTTAAGGGATTGATTTTGAAAAACTGCAATGGTTTCACACATCTCAACATCGATGCACCAACTCTCAAGTTCCTTGTCATTGAGGGTGATTTTGAGGATGTTAATCTTCGGAATACTCTGAGTCTTGAATATGTTTACATTGCTTTGGAATTCAATGTCAAGCAAAAGCGGGTTGTTGGCAGTTCAAGCAATTTGCTTAAGTTTGTCGTTCACCTATGTCACATTCGATGTCTTGAAATTACGAGTTACTCCTTAAAGTATTTGGCTGTTGGTGCTTTGCCAGGAAAGCTGCCAGAACCATTAATATATCTGAAAATTCTTTCTATGAGTGTAAGCTTCACTGATCTAGAGGAGATTACAACTGCTCTATGCCTCATAAGTAGCTCTCCAGCTCTACAGGAGCTAGAGATTTTTGTCCACCGTGACGATGGGGATGTTGTGGGTGAAGTGAATTCTTGGTTAGAAAATTTAGACGACAACTCGAATTATCAGTTCACCCAACTTCGAGGTATAGAAATAACTTGCATCTCTGGTGCCAAAGCTGAACTAGATTTGATCAAATTTCTGCTGTTAAGTTCACCTGTGCTTGAGCGGATGACTCTTCAGCCCGCTTCTGGAGATGGTTCTTTGAAAATGTTAAAAAAGGTGGTCCAGTTTAGGCGTGCCTCAATGCAAGCTGAGATAATCTTCTTGGACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019222 GO:0019538 GO:0031056 GO:0031248 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032991 GO:0033043 GO:0033044 GO:0035065 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:1901564 GO:1901983 GO:1902275 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241 GO:2000756

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

427

Amino Acids

48.34

Weight (kDa)

6.57

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	24 - 60	2.4e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	95 - 402	5.9e-14	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	111 - 331	1.7e-16	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10791
rosa_chinensis	RchiOBHm_Chr6g0268571 RchiOBHm_Chr6g0268611 RchiOBHm_Chr6g0268691 RchiOBHm_Chr6g0268791 RchiOBHm_Chr6g0268801
rosa_laevigata	RLG00000013896 RLG00000013900
rosa_multiflora	Rmu_sc0000869.1_g000012 Rmu_sc0005121.1_g000006 Rmu_sc0005125.1_g000014 Rmu_sc0006115.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312470 Rroxscaffold_7G00199160 Rroxscaffold_7G00199690
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162800 Rh6AG163800 Rh6BG166900 Rh6BG167800 Rh6BG168400 Rh6CG160900 Rh6CG161400 Rh6CG162000 Rh6CG162600 Rh6DG152200 Rh6DG152900 Rh6DG153600 Rh6DG154200
rosa_wichuraiana	Rw0G004740 Rw6G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1115
AccBSI	CCGCTC	1 cut(s)	1174
AciI	CCGC	4 cut(s)	56, 751, 1174, 1191
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	5 cut(s)	731, 897, 1033, 1048, 1142
AcuI	CTGAAG	1 cut(s)	1169
AfaI	GTAC	2 cut(s)	167, 261
AfeI	AGCGCT	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	1196
AflII	CTTAAG	3 cut(s)	191, 584, 779
AjnI	CCWGG	1 cut(s)	862
AluBI	AGCT	9 cut(s)	298, 363, 871, 918, 966, 974, 985, 1124, 1259
AluI	AGCT	9 cut(s)	298, 363, 871, 918, 966, 974, 985, 1124, 1259
Ama87I	CYCGRG	1 cut(s)	389
Aor51HI	AGCGCT	1 cut(s)	404
AoxI	GGCC	2 cut(s)	174, 277
ApeKI	GCWGC	1 cut(s)	871
ApoI	RAATTY	5 cut(s)	731, 897, 1033, 1048, 1142
AseI	ATTAAT	1 cut(s)	884
AspLEI	GCGC	2 cut(s)	405, 456
AspS9I	GGNCC	3 cut(s)	278, 1231, 1276
AsuHPI	GGTGA	6 cut(s)	226, 680, 785, 1037, 1069, 1152
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	1231, 1276
BanI	GGYRCC	1 cut(s)	1115
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	858
BccI	CCATC	4 cut(s)	333, 490, 1004, 1196
BciT130I	CCWGG	1 cut(s)	864
BclI	TGATCA	3 cut(s)	231, 253, 1137
BfaI	CTAG	4 cut(s)	317, 929, 986, 1130
BfmI	CTRYAG	1 cut(s)	977
BfoI	RGCGCY	1 cut(s)	406
BfrI	CTTAAG	3 cut(s)	191, 584, 779
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	872
BlsI	GCNGC	1 cut(s)	873
BmcAI	AGTACT	1 cut(s)	261
Bme1390I	CCNGG	1 cut(s)	864
Bme18I	GGWCC	2 cut(s)	1231, 1276
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	3 cut(s)	278, 1231, 1276
BmiI	GGNNCC	3 cut(s)	280, 1117, 1278
BmrFI	CCNGG	1 cut(s)	864
BmsI	GCATC	2 cut(s)	625, 1116
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	2 cut(s)	954, 1218
BpuEI	CTTGAG	2 cut(s)	632, 1190
Bsa29I	ATCGAT	1 cut(s)	633
BsaBI	GATNNNNATC	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	1 cut(s)	1196
Bse1I	ACTGG	1 cut(s)	1234
Bse3DI	GCAATG	2 cut(s)	616, 720
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	864
BseCI	ATCGAT	1 cut(s)	633
BseGI	GGATG	3 cut(s)	685, 1021, 1182
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	1 cut(s)	1196
BseMI	GCAATG	2 cut(s)	616, 720
BseMII	CTCAG	2 cut(s)	692, 1251
BseNI	ACTGG	1 cut(s)	1234
BseRI	GAGGAG	1 cut(s)	947
BseXI	GCAGC	1 cut(s)	858
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	176, 279
BshNI	GGYRCC	1 cut(s)	1115
BshVI	ATCGAT	1 cut(s)	633
BsiHKCI	CYCGRG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	1196
BsnI	GGCC	2 cut(s)	176, 279
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	6 cut(s)	120, 231, 253, 310, 925, 1137
BspACI	CCGC	4 cut(s)	56, 751, 1174, 1191
BspANI	GGCC	2 cut(s)	176, 279
BspCNI	CTCAG	2 cut(s)	693, 1252
BspDI	ATCGAT	1 cut(s)	633
BspLI	GGNNCC	3 cut(s)	280, 1117, 1278
BspT107I	GGYRCC	1 cut(s)	1115
BspTI	CTTAAG	3 cut(s)	191, 584, 779
BsrBI	CCGCTC	1 cut(s)	1174
BsrDI	GCAATG	2 cut(s)	616, 720
BsrI	ACTGG	1 cut(s)	1234
BssMI	GATC	6 cut(s)	120, 231, 253, 310, 925, 1137
Bst2UI	CCWGG	1 cut(s)	864
Bst4CI	ACNGT	1 cut(s)	1004
Bst6I	CTCTTC	1 cut(s)	1188
BstAFI	CTTAAG	3 cut(s)	191, 584, 779
BstC8I	GCNNGC	4 cut(s)	458, 1191, 1245, 1257
BstDEI	CTNAG	2 cut(s)	701, 1260
BstF5I	GGATG	3 cut(s)	685, 1021, 1182
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	2 cut(s)	405, 456
BstKTI	GATC	6 cut(s)	123, 234, 256, 313, 928, 1140
BstMBI	GATC	6 cut(s)	120, 231, 253, 310, 925, 1137
BstMWI	GCNNNNNNNGC	4 cut(s)	285, 768, 854, 868
BstNI	CCWGG	1 cut(s)	864
BstSCI	CCNGG	1 cut(s)	862
BstSFI	CTRYAG	1 cut(s)	977
BstV1I	GCAGC	1 cut(s)	858
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	176, 279
BsuTUI	ATCGAT	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	685, 1021, 1182
BtsI	GCAGTG	3 cut(s)	138, 212, 321
BtsIMutI	CAGTG	4 cut(s)	138, 212, 321, 921
Cac8I	GCNNGC	4 cut(s)	458, 1191, 1245, 1257
CfoI	GCGC	2 cut(s)	405, 456
Cfr13I	GGNCC	3 cut(s)	278, 1231, 1276
ClaI	ATCGAT	1 cut(s)	633
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	166, 260
CviAII	CATG	3 cut(s)	178, 420, 1281
CviQI	GTAC	2 cut(s)	166, 260
DdeI	CTNAG	2 cut(s)	701, 1260
DpnI	GATC	6 cut(s)	122, 233, 255, 312, 927, 1139
DpnII	GATC	6 cut(s)	120, 231, 253, 310, 925, 1137
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	1188
EarI	CTCTTC	1 cut(s)	1188
EciI	GGCGGA	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	1231, 1276
Eco47III	AGCGCT	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	1169
Eco88I	CYCGRG	1 cut(s)	389
EcoRI	GAATTC	2 cut(s)	731, 1033
EcoRII	CCWGG	1 cut(s)	862
FaeI	CATG	3 cut(s)	181, 423, 1284
FatI	CATG	3 cut(s)	177, 419, 1280
FauI	CCCGC	2 cut(s)	744, 1198
FbaI	TGATCA	3 cut(s)	231, 253, 1137
Fnu4HI	GCNGC	1 cut(s)	872
FokI	GGATG	3 cut(s)	692, 1028, 1189
Fsp4HI	GCNGC	1 cut(s)	872
FspBI	CTAG	4 cut(s)	317, 929, 986, 1130
GlaI	GCGC	2 cut(s)	404, 455
GluI	GCNGC	1 cut(s)	872
GsuI	CTGGAG	2 cut(s)	954, 1218
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	2 cut(s)	176, 279
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	2 cut(s)	405, 456
Hin1II	CATG	3 cut(s)	181, 423, 1284
Hin6I	GCGC	2 cut(s)	403, 454
HinP1I	GCGC	2 cut(s)	403, 454
HindIII	AAGCTT	2 cut(s)	296, 916
HinfI	GANTC	2 cut(s)	703, 1180
HphI	GGTGA	6 cut(s)	226, 680, 785, 1037, 1069, 1152
Hpy166II	GTNNAC	5 cut(s)	718, 793, 1000, 1077, 1160
Hpy188I	TCNGA	5 cut(s)	7, 231, 693, 702, 894
Hpy188III	TCNNGA	9 cut(s)	14, 308, 357, 391, 502, 707, 815, 929, 1197
Hpy8I	GTNNAC	5 cut(s)	718, 793, 1000, 1077, 1160
HpyAV	CCTTC	2 cut(s)	51, 426
HpyCH4III	ACNGT	1 cut(s)	1004
HpyCH4V	TGCA	7 cut(s)	242, 271, 460, 609, 638, 1107, 1255
HpyF10VI	GCNNNNNNNGC	4 cut(s)	285, 768, 854, 868
HpyF3I	CTNAG	2 cut(s)	701, 1260
Hsp92II	CATG	3 cut(s)	181, 423, 1284
HspAI	GCGC	2 cut(s)	403, 454
Ksp22I	TGATCA	3 cut(s)	231, 253, 1137
Kzo9I	GATC	6 cut(s)	120, 231, 253, 310, 925, 1137
LmnI	GCTCC	2 cut(s)	16, 982
LpnPI	CCDG	9 cut(s)	849, 876, 888, 965, 984, 1098, 1176, 1182, 1247
Lsp1109I	GCAGC	1 cut(s)	858
LweI	GCATC	2 cut(s)	625, 1116
MaeI	CTAG	4 cut(s)	317, 929, 986, 1130
MaeIII	GTNAC	4 cut(s)	532, 800, 827, 1004
MalI	GATC	6 cut(s)	122, 233, 255, 312, 927, 1139
MbiI	CCGCTC	1 cut(s)	1174
MboI	GATC	6 cut(s)	120, 231, 253, 310, 925, 1137
MboII	GAAGA	7 cut(s)	305, 338, 449, 569, 680, 1175, 1261
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	1 cut(s)	310
MlyI	GAGTC	2 cut(s)	712, 1174
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	9 cut(s)	192, 519, 585, 684, 780, 836, 884, 1154, 1220
MspCI	CTTAAG	3 cut(s)	191, 584, 779
MspR9I	CCNGG	1 cut(s)	864
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	864
MwoI	GCNNNNNNNGC	4 cut(s)	285, 768, 854, 868
NdeII	GATC	6 cut(s)	120, 231, 253, 310, 925, 1137
NlaIII	CATG	3 cut(s)	181, 423, 1284
NlaIV	GGNNCC	3 cut(s)	280, 1117, 1278
NmuCI	GTSAC	2 cut(s)	800, 1004
PkrI	GCNGC	1 cut(s)	873
PleI	GAGTC	2 cut(s)	711, 1174
PpsI	GAGTC	2 cut(s)	711, 1174
PshBI	ATTAAT	1 cut(s)	884
Psp6I	CCWGG	1 cut(s)	862
PspGI	CCWGG	1 cut(s)	862
PspN4I	GGNNCC	3 cut(s)	280, 1117, 1278
PspPI	GGNCC	3 cut(s)	278, 1231, 1276
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	167, 261
RsaNI	GTAC	2 cut(s)	166, 260
SaqAI	TTAA	9 cut(s)	192, 519, 585, 684, 780, 836, 884, 1154, 1220
SatI	GCNGC	1 cut(s)	872
Sau3AI	GATC	6 cut(s)	120, 231, 253, 310, 925, 1137
Sau96I	GGNCC	3 cut(s)	278, 1231, 1276
ScaI	AGTACT	1 cut(s)	261
SchI	GAGTC	2 cut(s)	712, 1174
ScrFI	CCNGG	1 cut(s)	864
SfaNI	GCATC	2 cut(s)	625, 1116
SfcI	CTRYAG	1 cut(s)	977
SinI	GGWCC	2 cut(s)	1231, 1276
SmlI	CTYRAG	5 cut(s)	191, 584, 647, 779, 1169
SmoI	CTYRAG	5 cut(s)	191, 584, 647, 779, 1169
SsiI	CCGC	4 cut(s)	56, 751, 1174, 1191
SspMI	CTAG	4 cut(s)	317, 929, 986, 1130
StyD4I	CCNGG	1 cut(s)	862
TaaI	ACNGT	1 cut(s)	1004
TaqI	TCGA	6 cut(s)	119, 307, 633, 808, 1064, 1087
TatI	WGTACW	1 cut(s)	259
Tru1I	TTAA	9 cut(s)	192, 519, 585, 684, 780, 836, 884, 1154, 1220
Tru9I	TTAA	9 cut(s)	192, 519, 585, 684, 780, 836, 884, 1154, 1220
TscAI	CASTG	4 cut(s)	138, 212, 328, 928
TseFI	GTSAC	2 cut(s)	800, 1004
TseI	GCWGC	1 cut(s)	871
Tsp45I	GTSAC	2 cut(s)	800, 1004
TspDTI	ATGAA	4 cut(s)	338, 408, 481, 560
TspRI	CASTG	4 cut(s)	138, 212, 328, 928
Vha464I	CTTAAG	3 cut(s)	191, 584, 779
VpaK11BI	GGWCC	2 cut(s)	1231, 1276
VspI	ATTAAT	1 cut(s)	884
XapI	RAATTY	5 cut(s)	731, 897, 1033, 1048, 1142
XbaI	TCTAGA	1 cut(s)	928
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1007
XspI	CTAG	4 cut(s)	317, 929, 986, 1130
ZrmI	AGTACT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.