Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005125.1

Orthogroup ID

OG0004842

Physical Location & Seq

Genomic Coordinates Forward (+)

67167 .. 68330

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005125.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atggctgacttctgccgaaatgggttcagttttcttgctctcaaaaccttatcattcatgcacagtagcggcgttcctatagatacgtatgctttgtgtagttctttaactgctgcatcttctattaaagatgttggcttcggtagaaagatacatgcccatgtggtaaagtcaggctggtgctccagtgtttttgttgggagtgctctgattgatttgtatgccaagtcattggttataggagatgcaggccaagtgtttgatgaaatgccgctgagaaacactgtttgtgcaaacgcacttttatcaggttatggtgatgccaagttgtggacagaggcagtagaattgatcaggaagatgccggcactgagtttggagtatgatcacttcacattgtctgcggcattacgtgcctgtgctgggctagctgcagttgaattgggtaggcaggtacatggttatttgatgcgttcggtttatgatgtgggaagtgatgtgtttctgctgagttcattgattgaaatgtatggtaaatgtgggctggtagccaaggctcagaaagttttcaattttgatggaaaaggagaggggaaaagagatgtggttatgtggacttcattgcttggtgtgtgtggtagaaatggatactataaagaggtacttgaactattcaaagatatgttgatggaaggaatttgcccagatggggtggcatttgtcacagtcatctctgcttgtgctcgcaccggtcaattgcagctcggcattgagtattttgaatccatggaactcaagttcagcttgaaaccaggtccagaacactacagctgtctagttgatttgctgtgtagagctggtgaattgggcaaggcgtggaagctcgttgatgagatgcttaataaaggtcacagcagctgcactgtccctatgtggggagctttgcttaatgtttgcaaagatcaaggtgatcttgaattgggtaaactggctgctcaaagggcacttgagttgaatcctcataatgatggtatttatgttttgctatcaaatttatatgccaggttcggtatgtggcacgagattaatcatttgagggaattaatgaaagaaaaggggttaaggaaagatgtcggatatagctggattgaagtcacaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

387

Amino Acids

42.56

Weight (kDa)

6.37

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10791
rosa_chinensis	RchiOBHm_Chr6g0268571 RchiOBHm_Chr6g0268611 RchiOBHm_Chr6g0268691 RchiOBHm_Chr6g0268791 RchiOBHm_Chr6g0268801
rosa_laevigata	RLG00000013896 RLG00000013900
rosa_multiflora	Rmu_sc0000869.1_g000012 Rmu_sc0005121.1_g000006 Rmu_sc0005125.1_g000014 Rmu_sc0006115.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312470 Rroxscaffold_7G00199160 Rroxscaffold_7G00199690
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162800 Rh6AG163800 Rh6BG166900 Rh6BG167800 Rh6BG168400 Rh6CG160900 Rh6CG161400 Rh6CG162000 Rh6CG162600 Rh6DG152200 Rh6DG152900 Rh6DG153600 Rh6DG154200
rosa_wichuraiana	Rw0G004740 Rw6G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	330
AciI	CCGC	3 cut(s)	69, 272, 404
AcsI	RAATTY	2 cut(s)	696, 1051
AfaI	GTAC	2 cut(s)	456, 663
AfiI	CCNNNNNNNGG	5 cut(s)	330, 423, 709, 934, 935
AgeI	ACCGGT	1 cut(s)	749
AjnI	CCWGG	2 cut(s)	811, 1061
AloI	GAACNNNNNNTCC	2 cut(s)	782, 814
AluBI	AGCT	9 cut(s)	431, 763, 804, 831, 857, 883, 918, 941, 1143
AluI	AGCT	9 cut(s)	431, 763, 804, 831, 857, 883, 918, 941, 1143
Alw21I	GWGCWC	3 cut(s)	185, 208, 745
AlwNI	CAGNNNCTG	1 cut(s)	918
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	6 cut(s)	113, 431, 760, 915, 918, 992
ApoI	RAATTY	2 cut(s)	696, 1051
AseI	ATTAAT	2 cut(s)	1086, 1103
AsiGI	ACCGGT	1 cut(s)	749
Asp700I	GAANNNNTTC	1 cut(s)	566
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	3 cut(s)	329, 872, 980
AsuNHI	GCTAGC	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	1006
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
BauI	CACGAG	1 cut(s)	1079
Bbv12I	GWGCWC	3 cut(s)	185, 208, 745
BbvI	GCAGC	6 cut(s)	100, 418, 772, 905, 927, 979
BccI	CCATC	4 cut(s)	572, 682, 701, 1022
BciT130I	CCWGG	2 cut(s)	813, 1063
BciVI	GTATCC	1 cut(s)	641
BclI	TGATCA	2 cut(s)	351, 385
BfaI	CTAG	2 cut(s)	428, 836
BfmI	CTRYAG	3 cut(s)	78, 432, 826
BfuAI	ACCTGC	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	641
BisI	GCNGC	9 cut(s)	70, 114, 272, 405, 432, 761, 916, 919, 993
BlsI	GCNGC	9 cut(s)	71, 115, 273, 406, 433, 762, 917, 920, 994
Bme1390I	CCNGG	2 cut(s)	813, 1063
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	815
BmrFI	CCNGG	2 cut(s)	813, 1063
BmsI	GCATC	6 cut(s)	125, 235, 310, 351, 459, 885
BmtI	GCTAGC	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	169
BpuEI	CTTGAG	2 cut(s)	779, 1028
BsaAI	YACGTR	2 cut(s)	87, 413
BsaJI	CCNNGG	2 cut(s)	552, 786
BsaWI	WCCGGW	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	5 cut(s)	330, 423, 709, 934, 935
Bse118I	RCCGGY	2 cut(s)	364, 749
Bse1I	ACTGG	2 cut(s)	186, 993
Bse3DI	GCAATG	1 cut(s)	620
BseBI	CCWGG	2 cut(s)	813, 1063
BseDI	CCNNGG	2 cut(s)	552, 786
BseLI	CCNNNNNNNGG	5 cut(s)	330, 423, 709, 934, 935
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	4 cut(s)	266, 362, 500, 572
BseNI	ACTGG	2 cut(s)	186, 993
BseSI	GKGCMC	1 cut(s)	1006
BseXI	GCAGC	6 cut(s)	100, 418, 772, 905, 927, 979
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	904
BshFI	GGCC	1 cut(s)	252
BshTI	ACCGGT	1 cut(s)	749
BsiHKAI	GWGCWC	3 cut(s)	185, 208, 745
BsiSI	CCGG	2 cut(s)	365, 750
BslFI	GGGAC	1 cut(s)	911
BslI	CCNNNNNNNGG	5 cut(s)	330, 423, 709, 934, 935
BsmFI	GGGAC	1 cut(s)	911
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	4 cut(s)	185, 208, 745, 1006
Bsp143I	GATC	4 cut(s)	351, 385, 961, 970
Bsp19I	CCATGG	1 cut(s)	786
BspACI	CCGC	3 cut(s)	69, 272, 404
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	4 cut(s)	267, 363, 501, 571
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	442
BspOI	GCTAGC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	620
BsrFI	RCCGGY	2 cut(s)	364, 749
BsrI	ACTGG	2 cut(s)	186, 993
BssAI	RCCGGY	2 cut(s)	364, 749
BssECI	CCNNGG	2 cut(s)	552, 786
BssMI	GATC	4 cut(s)	351, 385, 961, 970
BssSI	CACGAG	1 cut(s)	1079
BssT1I	CCWWGG	2 cut(s)	552, 786
Bst2BI	CACGAG	1 cut(s)	1079
Bst2UI	CCWGG	2 cut(s)	813, 1063
Bst4CI	ACNGT	4 cut(s)	65, 286, 727, 925
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBAI	YACGTR	2 cut(s)	87, 413
BstC8I	GCNNGC	4 cut(s)	250, 366, 429, 745
BstDEI	CTNAG	4 cut(s)	275, 371, 509, 558
BstDSI	CCRYGG	1 cut(s)	786
BstKTI	GATC	4 cut(s)	354, 388, 964, 973
BstMBI	GATC	4 cut(s)	351, 385, 961, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 428, 1001
BstNI	CCWGG	2 cut(s)	813, 1063
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	811, 1061
BstSFI	CTRYAG	3 cut(s)	78, 432, 826
BstSLI	GKGCMC	1 cut(s)	1006
BstSNI	TACGTA	1 cut(s)	87
BstV1I	GCAGC	6 cut(s)	100, 418, 772, 905, 927, 979
BstXI	CCANNNNNNTGG	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	786
BtsIMutI	CAGTG	4 cut(s)	193, 282, 368, 921
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	250, 366, 429, 745
CaiI	CAGNNNCTG	1 cut(s)	918
Cfr10I	RCCGGY	2 cut(s)	364, 749
Cfr13I	GGNCC	1 cut(s)	815
CsiI	ACCWGGT	1 cut(s)	811
Csp6I	GTAC	2 cut(s)	455, 662
CspAI	ACCGGT	1 cut(s)	749
CviAII	CATG	5 cut(s)	58, 155, 161, 458, 787
CviQI	GTAC	2 cut(s)	455, 662
DdeI	CTNAG	4 cut(s)	275, 371, 509, 558
DpnI	GATC	4 cut(s)	353, 387, 963, 972
DpnII	GATC	4 cut(s)	351, 385, 961, 970
Eco105I	TACGTA	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	552, 786
Eco47I	GGWCC	1 cut(s)	815
EcoRII	CCWGG	2 cut(s)	811, 1061
EcoT14I	CCWWGG	2 cut(s)	552, 786
ErhI	CCWWGG	2 cut(s)	552, 786
FaeI	CATG	5 cut(s)	61, 158, 164, 461, 790
FalI	AAGNNNNNCTT	6 cut(s)	648, 680, 788, 820, 957, 989
FaqI	GGGAC	1 cut(s)	911
FatI	CATG	5 cut(s)	57, 154, 160, 457, 786
FbaI	TGATCA	2 cut(s)	351, 385
Fnu4HI	GCNGC	9 cut(s)	70, 114, 272, 405, 432, 761, 916, 919, 993
Fsp4HI	GCNGC	9 cut(s)	70, 114, 272, 405, 432, 761, 916, 919, 993
FspBI	CTAG	2 cut(s)	428, 836
GluI	GCNGC	9 cut(s)	70, 114, 272, 405, 432, 761, 916, 919, 993
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	2 cut(s)	365, 750
Hin1II	CATG	5 cut(s)	61, 158, 164, 461, 790
HinfI	GANTC	2 cut(s)	782, 1015
HpaII	CCGG	2 cut(s)	365, 750
HphI	GGTGA	3 cut(s)	329, 872, 980
Hpy166II	GTNNAC	3 cut(s)	333, 615, 986
Hpy188I	TCNGA	3 cut(s)	210, 561, 1136
Hpy188III	TCNNGA	3 cut(s)	355, 818, 974
Hpy8I	GTNNAC	3 cut(s)	333, 615, 986
HpyAV	CCTTC	1 cut(s)	686
HpyCH4III	ACNGT	4 cut(s)	65, 286, 727, 925
HpyCH4IV	ACGT	2 cut(s)	86, 412
HpyCH4V	TGCA	8 cut(s)	61, 116, 248, 293, 434, 760, 921, 957
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 428, 1001
HpyF3I	CTNAG	4 cut(s)	275, 371, 509, 558
HpySE526I	ACGT	2 cut(s)	86, 412
Hsp92II	CATG	5 cut(s)	61, 158, 164, 461, 790
KroI	GCCGGC	1 cut(s)	364
KroNI	GCCGGC	1 cut(s)	366
Ksp22I	TGATCA	2 cut(s)	351, 385
Kzo9I	GATC	4 cut(s)	351, 385, 961, 970
LmnI	GCTCC	2 cut(s)	188, 938
Lsp1109I	GCAGC	6 cut(s)	100, 418, 772, 905, 927, 979
LweI	GCATC	6 cut(s)	125, 235, 310, 351, 459, 885
MabI	ACCWGGT	1 cut(s)	811
MaeI	CTAG	2 cut(s)	428, 836
MaeII	ACGT	2 cut(s)	86, 412
MaeIII	GTNAC	3 cut(s)	721, 908, 1153
MalI	GATC	4 cut(s)	353, 387, 963, 972
MboI	GATC	4 cut(s)	351, 385, 961, 970
MboII	GAAGA	2 cut(s)	111, 370
MfeI	CAATTG	1 cut(s)	755
MhlI	GDGCHC	4 cut(s)	185, 208, 745, 1006
MmeI	TCCRAC	1 cut(s)	1114
MnlI	CCTC	5 cut(s)	331, 583, 652, 1029, 1089
MroNI	GCCGGC	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	7 cut(s)	107, 126, 900, 948, 1086, 1103, 1121
MslI	CAYNNNNRTG	2 cut(s)	159, 1026
MspA1I	CMGCKG	3 cut(s)	274, 831, 918
MspI	CCGG	2 cut(s)	365, 750
MspR9I	CCNGG	2 cut(s)	813, 1063
MunI	CAATTG	1 cut(s)	755
MvaI	CCWGG	2 cut(s)	813, 1063
MwoI	GCNNNNNNNGC	3 cut(s)	413, 428, 1001
NaeI	GCCGGC	1 cut(s)	366
NcoI	CCATGG	1 cut(s)	786
NdeII	GATC	4 cut(s)	351, 385, 961, 970
NgoMIV	GCCGGC	1 cut(s)	364
NheI	GCTAGC	1 cut(s)	427
NlaIII	CATG	5 cut(s)	61, 158, 164, 461, 790
NmeAIII	GCCGAG	1 cut(s)	744
NmuCI	GTSAC	3 cut(s)	721, 908, 1153
NspI	RCATGY	1 cut(s)	158
PdiI	GCCGGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	782, 1015
PflMI	CCANNNNNTGG	1 cut(s)	330
PinAI	ACCGGT	1 cut(s)	749
PkrI	GCNGC	9 cut(s)	71, 115, 273, 406, 433, 762, 917, 920, 994
Ppu21I	YACGTR	2 cut(s)	87, 413
PshBI	ATTAAT	2 cut(s)	1086, 1103
Psp6I	CCWGG	2 cut(s)	811, 1061
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	811, 1061
PspPI	GGNCC	1 cut(s)	815
PstI	CTGCAG	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	918
PvuII	CAGCTG	2 cut(s)	831, 918
RsaI	GTAC	2 cut(s)	456, 663
RsaNI	GTAC	2 cut(s)	455, 662
RseI	CAYNNNNRTG	2 cut(s)	159, 1026
SaqAI	TTAA	7 cut(s)	107, 126, 900, 948, 1086, 1103, 1121
SatI	GCNGC	9 cut(s)	70, 114, 272, 405, 432, 761, 916, 919, 993
Sau3AI	GATC	4 cut(s)	351, 385, 961, 970
Sau96I	GGNCC	1 cut(s)	815
ScrFI	CCNGG	2 cut(s)	813, 1063
SduI	GDGCHC	4 cut(s)	185, 208, 745, 1006
SexAI	ACCWGGT	1 cut(s)	811
SfaNI	GCATC	6 cut(s)	125, 235, 310, 351, 459, 885
SfcI	CTRYAG	3 cut(s)	78, 432, 826
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	2 cut(s)	159, 1026
SmlI	CTYRAG	2 cut(s)	794, 1007
SmoI	CTYRAG	2 cut(s)	794, 1007
SnaBI	TACGTA	1 cut(s)	87
SsiI	CCGC	3 cut(s)	69, 272, 404
SspMI	CTAG	2 cut(s)	428, 836
StyD4I	CCNGG	2 cut(s)	811, 1061
StyI	CCWWGG	2 cut(s)	552, 786
TaaI	ACNGT	4 cut(s)	65, 286, 727, 925
TaiI	ACGT	2 cut(s)	89, 415
TauI	GCSGC	3 cut(s)	72, 274, 407
TfiI	GAWTC	2 cut(s)	782, 1015
Tru1I	TTAA	7 cut(s)	107, 126, 900, 948, 1086, 1103, 1121
Tru9I	TTAA	7 cut(s)	107, 126, 900, 948, 1086, 1103, 1121
TscAI	CASTG	4 cut(s)	193, 289, 375, 928
TseFI	GTSAC	3 cut(s)	721, 908, 1153
TseI	GCWGC	6 cut(s)	113, 431, 760, 915, 918, 992
Tsp45I	GTSAC	3 cut(s)	721, 908, 1153
TspDTI	ATGAA	5 cut(s)	46, 279, 504, 609, 1121
TspRI	CASTG	4 cut(s)	193, 289, 375, 928
Van91I	CCANNNNNTGG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	815
VspI	ATTAAT	2 cut(s)	1086, 1103
XapI	RAATTY	2 cut(s)	696, 1051
XceI	RCATGY	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	2 cut(s)	428, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.