Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004842

Physical Location & Seq

Genomic Coordinates Forward (+)

35468638 .. 35472043

Gene Structure 3406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGTCCAACTATTTCTCTCTATGTAGAACACAAAGCTCTGATTTCATTACTCGTTATATACACCACATTTCTCAAACCAAGAATCAAAGCGCCGTTAAGAAACTCCATGCTTACCTTCTAACAACAGGGTTGCTTATCATATCCCCTCATTTTCACGCTCAACTTATCCTCTCATACGCCAAATGCCTTCCCCAACACAACCTCCAGACACTGACCAACTTCTTCAAATGCATGAAACCCAAATGCCAATTACCATTCAATGTGTTAATGGCTGACTTCTGCCGAAATGGGTTCAGTTTTCTTGCTCTGAAAACCTTTTCATTCATGCACAGTAGCGGTGTTCCTATAGATACGTATGCTTTGTGTAGTTCTTTAACTGCTGCATCTTCTATTAAAGATGTTGGCTTCGGTAGAAAGATACATGCCCATGTGGTAAAGTCAGGCTGGTGCTCCAGTGTTTTTGTTGGGAGTGCTCTGATTGACTTGTATGCCAAGTCATTGGCTATAGGAGATGCAGACCAAGTGTTTGATGAAATGCCGCTGAGAAACACTGTTTGTGCAAACGCACTTTTATCAGGTTATGGTGATGCCAAGTTGTGGACAGAGGGAGTAGAATTGATCCGGAAGATGCAGGCACTGAGTTTGGAGTATGATCACTTGACATTGTCCGCGGCATTACGAGCCTGTGCTGGGCTAGCTGCAGTTGAATTGGGTAGGCAGGTACATGGTTATTTGATGCGTTCGGTTTATGATGTGGGAAGTGATATGTTTCTGCTGAGTTCGTTGATTGAAATGTATGGTAAATGTGGGCTGGTAGCCAAGGCTCAGAAAGTTTTCAATTTTGATGGAAAAGGAGAGGGGAAAAGAGATGTGGTTATGTGGACTTCACTGCTTGGTGTGTATGGTAGAAATGGATACTATAAAGAGGTACTTGAACTATTCAAAGATATGTTGATGGAAGGAATTAGCCCAGATGGGGTGGCATTTGTGACAGTCATCTCAGCTTGTGCTCGCACCGGTCAATTGCAGCTCGGCATTGAGTATTTTGAATCCATGGAACTCAAGTTCGGCTTGAAACCAGGTCCAGAACACTACAGCTGTCTAGTTGATTTGCTGTGTAGAGCTGGTGAATTGGGCAAGGCGTGGAAGCTCGTTGATGAGATGCTTAATAAAGGTCACAGCAGCTGCACTGTCCCTATGTGGGGAGCTTTGCTTAGTGCTTGCAAAGATCAAGGTGATCTTGAATTGGGTAAACTGGCTGCTCAAAGGGCACTTGAGTTGAATCCTCATAATGATGGTATTTATGTTTTGCTATCAAATTTATATGCCAGGTTCGGTATGTGGCACGAGATTAATCATTTGAGGGAGTTAATGAAAGAAAAGGGGTTAAGGAAAGATGTCGGATATAGCCGGATTGAAGTCACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

476

Amino Acids

52.88

Weight (kDa)

8.38

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	289 - 338	1.6e-10	PPR repeat family
PPR	PF01535	292 - 322	1.5e-07	PPR repeat
PPR_1	PF12854	357 - 388	1.9e-07	PPR repeat
E_motif	PF20431	413 - 473	3.6e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10791
rosa_chinensis	RchiOBHm_Chr6g0268571 RchiOBHm_Chr6g0268611 RchiOBHm_Chr6g0268691 RchiOBHm_Chr6g0268791 RchiOBHm_Chr6g0268801
rosa_laevigata	RLG00000013896 RLG00000013900
rosa_multiflora	Rmu_sc0000869.1_g000012 Rmu_sc0005121.1_g000006 Rmu_sc0005125.1_g000014 Rmu_sc0006115.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312470 Rroxscaffold_7G00199160 Rroxscaffold_7G00199690
rosa_rugosa	Rorug06G0043200
rosa_samantha	Rh6AG162800 Rh6AG163800 Rh6BG166900 Rh6BG167800 Rh6BG168400 Rh6CG160900 Rh6CG161400 Rh6CG162000 Rh6CG162600 Rh6DG152200 Rh6DG152900 Rh6DG153600 Rh6DG154200
rosa_wichuraiana	Rw0G004740 Rw6G014050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	709
AccB7I	CCANNNNNTGG	1 cut(s)	597
AccII	CGCG	1 cut(s)	671
AccIII	TCCGGA	1 cut(s)	621
AciI	CCGC	4 cut(s)	336, 539, 669, 671
AclWI	GGATC	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	1318
AfaI	GTAC	2 cut(s)	723, 930
AfiI	CCNNNNNNNGG	5 cut(s)	597, 690, 976, 1201, 1202
AgeI	ACCGGT	1 cut(s)	1016
AjnI	CCWGG	2 cut(s)	1078, 1328
AloI	GAACNNNNNNTCC	2 cut(s)	1049, 1081
AluBI	AGCT	9 cut(s)	36, 698, 1004, 1030, 1098, 1124, 1150, 1185, 1208
AluI	AGCT	9 cut(s)	36, 698, 1004, 1030, 1098, 1124, 1150, 1185, 1208
Alw21I	GWGCWC	3 cut(s)	452, 475, 1012
AlwI	GGATC	1 cut(s)	613
AlwNI	CAGNNNCTG	3 cut(s)	211, 637, 1185
Aor13HI	TCCGGA	1 cut(s)	621
ApeKI	GCWGC	6 cut(s)	380, 698, 1027, 1182, 1185, 1259
ApoI	RAATTY	1 cut(s)	1318
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
AseI	ATTAAT	1 cut(s)	1353
AsiGI	ACCGGT	1 cut(s)	1016
Asp700I	GAANNNNTTC	1 cut(s)	833
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	1082
AsuHPI	GGTGA	3 cut(s)	596, 1139, 1247
AsuNHI	GCTAGC	1 cut(s)	694
AvaII	GGWCC	1 cut(s)	1082
BaeGI	GKGCMC	1 cut(s)	1273
BauI	CACGAG	1 cut(s)	1346
Bbv12I	GWGCWC	3 cut(s)	452, 475, 1012
BbvI	GCAGC	6 cut(s)	367, 685, 1039, 1172, 1194, 1246
BccI	CCATC	4 cut(s)	839, 949, 968, 1289
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	1080, 1330
BciVI	GTATCC	1 cut(s)	908
BclI	TGATCA	1 cut(s)	652
BfaI	CTAG	2 cut(s)	695, 1103
BfmI	CTRYAG	4 cut(s)	345, 504, 699, 1093
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	709
BfuI	GTATCC	1 cut(s)	908
BisI	GCNGC	8 cut(s)	381, 539, 672, 699, 1028, 1183, 1186, 1260
BlsI	GCNGC	8 cut(s)	382, 540, 673, 700, 1029, 1184, 1187, 1261
Bme1390I	CCNGG	2 cut(s)	1080, 1330
Bme18I	GGWCC	1 cut(s)	1082
BmgT120I	GGNCC	1 cut(s)	1082
BmrFI	CCNGG	2 cut(s)	1080, 1330
BmsI	GCATC	6 cut(s)	392, 502, 577, 618, 726, 1152
BmtI	GCTAGC	1 cut(s)	698
BpmI	CTGGAG	2 cut(s)	188, 436
BpuEI	CTTGAG	2 cut(s)	1046, 1295
BsaAI	YACGTR	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	669, 819, 1053
BsaWI	WCCGGW	2 cut(s)	621, 1016
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	5 cut(s)	597, 690, 976, 1201, 1202
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	2 cut(s)	453, 1260
BseAI	TCCGGA	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	1080, 1330
BseDI	CCNNGG	3 cut(s)	669, 819, 1053
BseLI	CCNNNNNNNGG	5 cut(s)	597, 690, 976, 1201, 1202
BseMII	CTCAG	5 cut(s)	533, 629, 767, 839, 1014
BseNI	ACTGG	2 cut(s)	453, 1260
BseSI	GKGCMC	1 cut(s)	1273
BseXI	GCAGC	6 cut(s)	367, 685, 1039, 1172, 1194, 1246
BseYI	CCCAGC	1 cut(s)	689
BsgI	GTGCAG	1 cut(s)	1171
Bsh1236I	CGCG	1 cut(s)	671
BshTI	ACCGGT	1 cut(s)	1016
BsiHKAI	GWGCWC	3 cut(s)	452, 475, 1012
BsiSI	CCGG	3 cut(s)	622, 1017, 1411
BslFI	GGGAC	1 cut(s)	1178
BslI	CCNNNNNNNGG	5 cut(s)	597, 690, 976, 1201, 1202
BsmFI	GGGAC	1 cut(s)	1178
Bsp1286I	GDGCHC	4 cut(s)	452, 475, 1012, 1273
Bsp13I	TCCGGA	1 cut(s)	621
Bsp143I	GATC	4 cut(s)	618, 652, 1228, 1237
Bsp19I	CCATGG	1 cut(s)	1053
BspACI	CCGC	4 cut(s)	336, 539, 669, 671
BspCNI	CTCAG	5 cut(s)	534, 630, 768, 838, 1013
BspEI	TCCGGA	1 cut(s)	621
BspFNI	CGCG	1 cut(s)	671
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	1 cut(s)	709
BspOI	GCTAGC	1 cut(s)	698
BspPI	GGATC	1 cut(s)	613
BsrFI	RCCGGY	1 cut(s)	1016
BsrI	ACTGG	2 cut(s)	453, 1260
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	3 cut(s)	669, 819, 1053
BssMI	GATC	4 cut(s)	618, 652, 1228, 1237
BssSI	CACGAG	1 cut(s)	1346
BssT1I	CCWWGG	2 cut(s)	819, 1053
Bst2BI	CACGAG	1 cut(s)	1346
Bst2UI	CCWGG	2 cut(s)	1080, 1330
Bst4CI	ACNGT	4 cut(s)	332, 553, 994, 1192
BstBAI	YACGTR	1 cut(s)	354
BstC8I	GCNNGC	4 cut(s)	633, 696, 1012, 1222
BstDEI	CTNAG	6 cut(s)	542, 638, 776, 825, 1000, 1214
BstDSI	CCRYGG	2 cut(s)	669, 1053
BstFNI	CGCG	1 cut(s)	671
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	4 cut(s)	621, 655, 1231, 1240
BstMBI	GATC	4 cut(s)	618, 652, 1228, 1237
BstMWI	GCNNNNNNNGC	3 cut(s)	680, 695, 1268
BstNI	CCWGG	2 cut(s)	1080, 1330
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	1078, 1328
BstSFI	CTRYAG	4 cut(s)	345, 504, 699, 1093
BstSLI	GKGCMC	1 cut(s)	1273
BstSNI	TACGTA	1 cut(s)	354
BstUI	CGCG	1 cut(s)	671
BstV1I	GCAGC	6 cut(s)	367, 685, 1039, 1172, 1194, 1246
BstXI	CCANNNNNNTGG	1 cut(s)	499
BsuI	GTATCC	1 cut(s)	908
BtgI	CCRYGG	2 cut(s)	669, 1053
BtsI	GCAGTG	1 cut(s)	887
BtsIMutI	CAGTG	6 cut(s)	209, 460, 549, 635, 887, 1188
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	4 cut(s)	633, 696, 1012, 1222
CaiI	CAGNNNCTG	3 cut(s)	211, 637, 1185
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	1016
Cfr13I	GGNCC	1 cut(s)	1082
Cfr42I	CCGCGG	1 cut(s)	672
CsiI	ACCWGGT	1 cut(s)	1078
Csp6I	GTAC	2 cut(s)	722, 929
CspAI	ACCGGT	1 cut(s)	1016
CviAII	CATG	7 cut(s)	107, 232, 325, 422, 428, 725, 1054
CviQI	GTAC	2 cut(s)	722, 929
DdeI	CTNAG	6 cut(s)	542, 638, 776, 825, 1000, 1214
DpnI	GATC	4 cut(s)	620, 654, 1230, 1239
DpnII	GATC	4 cut(s)	618, 652, 1228, 1237
Eco105I	TACGTA	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	819, 1053
Eco47I	GGWCC	1 cut(s)	1082
EcoRII	CCWGG	2 cut(s)	1078, 1328
EcoT14I	CCWWGG	2 cut(s)	819, 1053
EcoT22I	ATGCAT	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	819, 1053
FaeI	CATG	7 cut(s)	110, 235, 328, 425, 431, 728, 1057
FalI	AAGNNNNNCTT	6 cut(s)	915, 947, 1055, 1087, 1224, 1256
FaqI	GGGAC	1 cut(s)	1178
FatI	CATG	7 cut(s)	106, 231, 324, 421, 427, 724, 1053
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	8 cut(s)	381, 539, 672, 699, 1028, 1183, 1186, 1260
Fsp4HI	GCNGC	8 cut(s)	381, 539, 672, 699, 1028, 1183, 1186, 1260
FspBI	CTAG	2 cut(s)	695, 1103
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	8 cut(s)	381, 539, 672, 699, 1028, 1183, 1186, 1260
GsaI	CCCAGC	1 cut(s)	693
GsuI	CTGGAG	2 cut(s)	188, 436
HaeII	RGCGCY	1 cut(s)	93
HapII	CCGG	3 cut(s)	622, 1017, 1411
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	110, 235, 328, 425, 431, 728, 1057
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	3 cut(s)	82, 1049, 1282
HpaII	CCGG	3 cut(s)	622, 1017, 1411
HphI	GGTGA	3 cut(s)	596, 1139, 1247
Hpy166II	GTNNAC	3 cut(s)	600, 882, 1253
Hpy188I	TCNGA	5 cut(s)	40, 309, 477, 828, 1403
Hpy188III	TCNNGA	4 cut(s)	205, 622, 1085, 1241
Hpy8I	GTNNAC	3 cut(s)	600, 882, 1253
HpyAV	CCTTC	3 cut(s)	125, 197, 953
HpyCH4III	ACNGT	4 cut(s)	332, 553, 994, 1192
HpyCH4IV	ACGT	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	680, 695, 1268
HpyF3I	CTNAG	6 cut(s)	542, 638, 776, 825, 1000, 1214
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	7 cut(s)	110, 235, 328, 425, 431, 728, 1057
HspAI	GCGC	1 cut(s)	90
Kpn2I	TCCGGA	1 cut(s)	621
Ksp22I	TGATCA	1 cut(s)	652
KspI	CCGCGG	1 cut(s)	672
Kzo9I	GATC	4 cut(s)	618, 652, 1228, 1237
LmnI	GCTCC	2 cut(s)	455, 1205
Lsp1109I	GCAGC	6 cut(s)	367, 685, 1039, 1172, 1194, 1246
LweI	GCATC	6 cut(s)	392, 502, 577, 618, 726, 1152
MabI	ACCWGGT	1 cut(s)	1078
MaeI	CTAG	2 cut(s)	695, 1103
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	3 cut(s)	988, 1175, 1420
MalI	GATC	4 cut(s)	620, 654, 1230, 1239
MboI	GATC	4 cut(s)	618, 652, 1228, 1237
MboII	GAAGA	3 cut(s)	214, 378, 637
MfeI	CAATTG	1 cut(s)	1022
MhlI	GDGCHC	4 cut(s)	452, 475, 1012, 1273
MmeI	TCCRAC	2 cut(s)	30, 1381
MnlI	CCTC	8 cut(s)	156, 179, 212, 598, 850, 919, 1296, 1356
Mph1103I	ATGCAT	1 cut(s)	233
MroI	TCCGGA	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	833
MseI	TTAA	8 cut(s)	96, 266, 374, 393, 1167, 1353, 1370, 1388
MslI	CAYNNNNRTG	2 cut(s)	426, 1293
MspA1I	CMGCKG	4 cut(s)	541, 671, 1098, 1185
MspI	CCGG	3 cut(s)	622, 1017, 1411
MspR9I	CCNGG	2 cut(s)	1080, 1330
MunI	CAATTG	1 cut(s)	1022
MvaI	CCWGG	2 cut(s)	1080, 1330
MvnI	CGCG	1 cut(s)	671
MwoI	GCNNNNNNNGC	3 cut(s)	680, 695, 1268
NcoI	CCATGG	1 cut(s)	1053
NdeII	GATC	4 cut(s)	618, 652, 1228, 1237
NheI	GCTAGC	1 cut(s)	694
NlaIII	CATG	7 cut(s)	110, 235, 328, 425, 431, 728, 1057
NmeAIII	GCCGAG	1 cut(s)	1011
NmuCI	GTSAC	3 cut(s)	988, 1175, 1420
NsiI	ATGCAT	1 cut(s)	233
NspI	RCATGY	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	833
PfeI	GAWTC	3 cut(s)	82, 1049, 1282
PflFI	GACNNNGTC	1 cut(s)	664
PflMI	CCANNNNNTGG	1 cut(s)	597
PinAI	ACCGGT	1 cut(s)	1016
PkrI	GCNGC	8 cut(s)	382, 540, 673, 700, 1029, 1184, 1187, 1261
Ppu21I	YACGTR	1 cut(s)	354
PshBI	ATTAAT	1 cut(s)	1353
Psp6I	CCWGG	2 cut(s)	1078, 1328
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	2 cut(s)	1078, 1328
PspPI	GGNCC	1 cut(s)	1082
PstI	CTGCAG	1 cut(s)	703
PstNI	CAGNNNCTG	3 cut(s)	211, 637, 1185
PsyI	GACNNNGTC	1 cut(s)	664
PvuII	CAGCTG	2 cut(s)	1098, 1185
RsaI	GTAC	2 cut(s)	723, 930
RsaNI	GTAC	2 cut(s)	722, 929
RseI	CAYNNNNRTG	2 cut(s)	426, 1293
SacII	CCGCGG	1 cut(s)	672
SaqAI	TTAA	8 cut(s)	96, 266, 374, 393, 1167, 1353, 1370, 1388
SatI	GCNGC	8 cut(s)	381, 539, 672, 699, 1028, 1183, 1186, 1260
Sau3AI	GATC	4 cut(s)	618, 652, 1228, 1237
Sau96I	GGNCC	1 cut(s)	1082
ScrFI	CCNGG	2 cut(s)	1080, 1330
SduI	GDGCHC	4 cut(s)	452, 475, 1012, 1273
SexAI	ACCWGGT	1 cut(s)	1078
SfaNI	GCATC	6 cut(s)	392, 502, 577, 618, 726, 1152
SfcI	CTRYAG	4 cut(s)	345, 504, 699, 1093
Sfr303I	CCGCGG	1 cut(s)	672
SgrBI	CCGCGG	1 cut(s)	672
SinI	GGWCC	1 cut(s)	1082
SmiMI	CAYNNNNRTG	2 cut(s)	426, 1293
SmlI	CTYRAG	2 cut(s)	1061, 1274
SmoI	CTYRAG	2 cut(s)	1061, 1274
SnaBI	TACGTA	1 cut(s)	354
SsiI	CCGC	4 cut(s)	336, 539, 669, 671
SspMI	CTAG	2 cut(s)	695, 1103
StyD4I	CCNGG	2 cut(s)	1078, 1328
StyI	CCWWGG	2 cut(s)	819, 1053
TaaI	ACNGT	4 cut(s)	332, 553, 994, 1192
TaiI	ACGT	1 cut(s)	356
TauI	GCSGC	2 cut(s)	541, 674
TfiI	GAWTC	3 cut(s)	82, 1049, 1282
Tru1I	TTAA	8 cut(s)	96, 266, 374, 393, 1167, 1353, 1370, 1388
Tru9I	TTAA	8 cut(s)	96, 266, 374, 393, 1167, 1353, 1370, 1388
TscAI	CASTG	6 cut(s)	216, 460, 556, 642, 894, 1195
TseFI	GTSAC	3 cut(s)	988, 1175, 1420
TseI	GCWGC	6 cut(s)	380, 698, 1027, 1182, 1185, 1259
Tsp45I	GTSAC	3 cut(s)	988, 1175, 1420
TspDTI	ATGAA	6 cut(s)	34, 248, 309, 313, 546, 1388
TspRI	CASTG	6 cut(s)	216, 460, 556, 642, 894, 1195
Tth111I	GACNNNGTC	1 cut(s)	664
Van91I	CCANNNNNTGG	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	1082
VspI	ATTAAT	1 cut(s)	1353
XapI	RAATTY	1 cut(s)	1318
XceI	RCATGY	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	833
XspI	CTAG	2 cut(s)	695, 1103
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.