Rh6CG162000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004842
Physical Location & Seq
Reverse (-)
21712428 .. 21713024
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG162000.1

Sequence Viewer

Length: 597 bp
ATGAAACCCAAAAGCGAATTACCAATCAATGTGTTAATGGCTGACTTCTGCCGAAATGGGTTCAGTTTTCTTGCTCTCAAAACCTTATCATTCATGCACAGTAGCGGTGTTCCTATAGATACGTATGCTTTGTGTAGTTCTTTAACTGCTGCATCTTCTATTAAAGATGTTGGCTTCGGTAGAAAGATACATGCCCATGTGGTAAAGTCAGGCTGGTGCTCCAGTGTTTTTGTTGGGAGTGCTCTGATTGACTTGTATGCCAAGTCATTGGTTATAGGAGATGCAGGCCAAGTGTTTGATGAAATGCCGCTGAGAAACACTGTTTGTGCAAACGCACTTTTATCAGGTTATGGTGATGCCAAGTTGTGGACAGAGGCAGTAGAATTGATCAGGAAGATGCCGGCACTGAGTTTGGAGTATGATCACTTCACATTGTCTGCGGCATTACGTGCCTGTGCTGGGCTAGCTGCAGTTGAATTGGGTAGGCAGGTACATGGTTATTTGATGCGTTTGGTTTATGATGTGGGAAGTGATGTGTTTCTGCTGAGTTCATTGATTGAAATGTATGGTAAATGTGGGCTGGTAGCCAAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

198

Amino Acids

21.31

Weight (kDa)

7.62

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 105 - 153 4.1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 478
AccB7I CCANNNNNTGG 1 cut(s) 366
AciI CCGC 3 cut(s) 105, 308, 440
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 2 cut(s) 366, 459
AgsI TTSAA 2 cut(s) 476, 560
AluBI AGCT 1 cut(s) 467
AluI AGCT 1 cut(s) 467
Alw21I GWGCWC 2 cut(s) 221, 244
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 2 cut(s) 149, 467
AsuHPI GGTGA 1 cut(s) 365
AsuNHI GCTAGC 1 cut(s) 463
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
Bbv12I GWGCWC 2 cut(s) 221, 244
BbvI GCAGC 2 cut(s) 136, 454
BclI TGATCA 2 cut(s) 387, 421
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 2 cut(s) 114, 468
BfuAI ACCTGC 1 cut(s) 478
BisI GCNGC 4 cut(s) 150, 308, 441, 468
BlsI GCNGC 4 cut(s) 151, 309, 442, 469
BmsI GCATC 5 cut(s) 161, 271, 346, 387, 495
BmtI GCTAGC 1 cut(s) 467
BpmI CTGGAG 1 cut(s) 205
BsaAI YACGTR 2 cut(s) 123, 449
BsaJI CCNNGG 1 cut(s) 588
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 459
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 366, 459
BseMII CTCAG 3 cut(s) 302, 398, 536
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 136, 454
BseYI CCCAGC 1 cut(s) 458
BshFI GGCC 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 221, 244
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 366, 459
BsnI GGCC 1 cut(s) 288
Bsp1286I GDGCHC 2 cut(s) 221, 244
Bsp143I GATC 2 cut(s) 387, 421
BspACI CCGC 3 cut(s) 105, 308, 440
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 3 cut(s) 303, 399, 537
BspMAI CTGCAG 1 cut(s) 472
BspMI ACCTGC 1 cut(s) 478
BspOI GCTAGC 1 cut(s) 467
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 2 cut(s) 387, 421
BssT1I CCWWGG 1 cut(s) 588
Bst4CI ACNGT 2 cut(s) 101, 322
BstAPI GCANNNNNTGC 1 cut(s) 449
BstBAI YACGTR 2 cut(s) 123, 449
BstC8I GCNNGC 3 cut(s) 286, 402, 465
BstDEI CTNAG 4 cut(s) 311, 407, 545, 594
BstKTI GATC 2 cut(s) 390, 424
BstMBI GATC 2 cut(s) 387, 421
BstMWI GCNNNNNNNGC 2 cut(s) 449, 464
BstNSI RCATGY 1 cut(s) 194
BstSFI CTRYAG 2 cut(s) 114, 468
BstSNI TACGTA 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 136, 454
BstXI CCANNNNNNTGG 1 cut(s) 268
BsuRI GGCC 1 cut(s) 288
BtsIMutI CAGTG 3 cut(s) 229, 318, 404
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 3 cut(s) 286, 402, 465
Cfr10I RCCGGY 1 cut(s) 400
Csp6I GTAC 1 cut(s) 491
CviAII CATG 4 cut(s) 94, 191, 197, 494
CviJI RGCY 9 cut(s) 41, 174, 213, 288, 463, 467, 580, 587, 593
CviKI_1 RGCY 9 cut(s) 41, 174, 213, 288, 463, 467, 580, 587, 593
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 4 cut(s) 311, 407, 545, 594
DpnI GATC 2 cut(s) 389, 423
DpnII GATC 2 cut(s) 387, 421
Eco105I TACGTA 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 588
EcoT14I CCWWGG 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 4 cut(s) 97, 194, 200, 497
FatI CATG 4 cut(s) 93, 190, 196, 493
FbaI TGATCA 2 cut(s) 387, 421
Fnu4HI GCNGC 4 cut(s) 150, 308, 441, 468
Fsp4HI GCNGC 4 cut(s) 150, 308, 441, 468
FspBI CTAG 1 cut(s) 464
GluI GCNGC 4 cut(s) 150, 308, 441, 468
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 1 cut(s) 288
HapII CCGG 1 cut(s) 401
Hin1II CATG 4 cut(s) 97, 194, 200, 497
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 1 cut(s) 369
HpyCH4III ACNGT 2 cut(s) 101, 322
HpyCH4IV ACGT 2 cut(s) 122, 448
HpyCH4V TGCA 5 cut(s) 97, 152, 284, 329, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 464
HpyF3I CTNAG 4 cut(s) 311, 407, 545, 594
HpySE526I ACGT 2 cut(s) 122, 448
Hsp92II CATG 4 cut(s) 97, 194, 200, 497
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 2 cut(s) 387, 421
Kzo9I GATC 2 cut(s) 387, 421
LmnI GCTCC 1 cut(s) 224
Lsp1109I GCAGC 2 cut(s) 136, 454
LweI GCATC 5 cut(s) 161, 271, 346, 387, 495
MaeI CTAG 1 cut(s) 464
MaeII ACGT 2 cut(s) 122, 448
MalI GATC 2 cut(s) 389, 423
MboI GATC 2 cut(s) 387, 421
MboII GAAGA 2 cut(s) 147, 406
MhlI GDGCHC 2 cut(s) 221, 244
MluCI AATT 3 cut(s) 17, 383, 476
MnlI CCTC 1 cut(s) 367
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 3 cut(s) 35, 143, 162
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 310
MspI CCGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 449, 464
NaeI GCCGGC 1 cut(s) 402
NdeII GATC 2 cut(s) 387, 421
NgoMIV GCCGGC 1 cut(s) 400
NheI GCTAGC 1 cut(s) 463
NlaIII CATG 4 cut(s) 97, 194, 200, 497
NspI RCATGY 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 402
PflMI CCANNNNNTGG 1 cut(s) 366
PkrI GCNGC 4 cut(s) 151, 309, 442, 469
Ppu21I YACGTR 2 cut(s) 123, 449
PspFI CCCAGC 1 cut(s) 458
PstI CTGCAG 1 cut(s) 472
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 3 cut(s) 35, 143, 162
SatI GCNGC 4 cut(s) 150, 308, 441, 468
Sau3AI GATC 2 cut(s) 387, 421
SduI GDGCHC 2 cut(s) 221, 244
SetI ASST 6 cut(s) 86, 125, 349, 451, 469, 492
SfaNI GCATC 5 cut(s) 161, 271, 346, 387, 495
SfcI CTRYAG 2 cut(s) 114, 468
SmiMI CAYNNNNRTG 1 cut(s) 195
SnaBI TACGTA 1 cut(s) 123
Sse9I AATT 3 cut(s) 17, 383, 476
SsiI CCGC 3 cut(s) 105, 308, 440
SspMI CTAG 1 cut(s) 464
StyI CCWWGG 1 cut(s) 588
TaaI ACNGT 2 cut(s) 101, 322
TaiI ACGT 2 cut(s) 125, 451
TasI AATT 3 cut(s) 17, 383, 476
TauI GCSGC 2 cut(s) 310, 443
Tru1I TTAA 3 cut(s) 35, 143, 162
Tru9I TTAA 3 cut(s) 35, 143, 162
TscAI CASTG 3 cut(s) 229, 325, 411
TseI GCWGC 2 cut(s) 149, 467
TspDTI ATGAA 4 cut(s) 17, 82, 315, 540
TspRI CASTG 3 cut(s) 229, 325, 411
Van91I CCANNNNNTGG 1 cut(s) 366
XceI RCATGY 1 cut(s) 194
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.